Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 3.3e-127 458.4 233 100.0
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 1.0e-83 313.9 225 76.9
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 5.1e-83 311.6 225 76.4
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 7.6e-79 297.7 225 73.8
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 6.6e-75 284.6 227 71.4
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 6.6e-75 284.6 227 71.4
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 1.1e-72 277.3 183 79.8
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 1.3e-70 270.4 188 77.7
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 6.4e-70 268.1 188 77.1
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 1.5e-63 246.9 224 57.1
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 6.4e-62 241.5 219 58.4
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 8.4e-62 241.1 231 57.1
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 1.4e-61 240.4 235 55.3
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 2.4e-61 239.6 234 55.1
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 3.2e-61 239.2 235 55.3
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 5.4e-61 238.4 234 56.0
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 2.1e-60 236.5 236 54.2
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 3.5e-60 235.7 235 54.5
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 4.6e-60 235.3 235 54.5
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 1.0e-59 234.2 236 54.2
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 3.9e-59 232.3 234 54.7
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 8.7e-59 231.1 234 53.4
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 1.1e-58 230.7 229 54.1
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 2.6e-55 219.5 189 62.4
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 1.7e-54 216.9 227 50.2
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 3.8e-54 215.7 228 49.6
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 8.4e-54 214.5 245 47.3
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 5.5e-53 211.8 220 50.5
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 5.5e-53 211.8 219 51.1
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 9.3e-53 211.1 228 50.4
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 2.1e-52 209.9 236 47.9
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 2.1e-52 209.9 226 50.4
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 2.1e-52 209.9 219 51.1
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 6.0e-52 208.4 219 51.6
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 1.0e-51 207.6 219 49.3
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 1.0e-51 207.6 229 48.5
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 1.0e-51 207.6 229 48.9
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 1.8e-51 206.8 228 48.2
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 1.8e-51 206.8 235 48.5
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 1.8e-51 206.8 216 50.0
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 2.3e-51 206.5 228 48.7
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 3.0e-51 206.1 219 48.4
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 3.9e-51 205.7 236 47.0
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 3.9e-51 205.7 223 49.3
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 8.7e-51 204.5 228 47.4
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 1.5e-50 203.8 219 49.3
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 2.5e-50 203.0 216 49.5
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 2.5e-50 203.0 227 50.2
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.6e-49 200.3 218 49.1
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 1.6e-49 200.3 221 47.1
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 2.1e-49 199.9 222 47.3
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 3.7e-49 199.1 225 47.6
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 6.2e-49 198.4 235 46.0
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 2.4e-48 196.4 225 48.0
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 2.4e-48 196.4 228 49.6
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 2.4e-48 196.4 246 45.9
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 2.4e-48 196.4 220 47.7
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 3.1e-48 196.1 247 47.0
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 3.1e-48 196.1 235 45.1
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 4.0e-48 195.7 225 49.3
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 4.0e-48 195.7 238 45.0
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 4.0e-48 195.7 224 47.8
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 5.3e-48 195.3 233 46.8
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.2e-47 194.1 214 49.1
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 2.6e-47 193.0 229 46.3
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 4.5e-47 192.2 228 47.4
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 4.5e-47 192.2 224 46.9
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 5.8e-47 191.8 230 47.8
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 7.6e-47 191.4 241 44.8
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 1.0e-46 191.0 219 47.5
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 1.0e-46 191.0 225 45.8
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 1.3e-46 190.7 229 45.4
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 1.7e-46 190.3 249 44.2
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 2.2e-46 189.9 235 46.0
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 2.9e-46 189.5 229 45.9
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 3.8e-46 189.1 243 45.7
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 8.4e-46 188.0 223 46.6
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 8.4e-46 188.0 241 44.0
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 8.4e-46 188.0 237 44.7
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 9.3e-45 184.5 224 44.6
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 1.2e-44 184.1 227 44.5
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 2.7e-44 183.0 227 44.5
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 3.5e-44 182.6 239 43.5
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.0e-43 181.0 248 42.7
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 3.0e-43 179.5 250 40.4
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 8.7e-43 177.9 221 45.2
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 1.9e-42 176.8 231 42.9
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 5.7e-42 175.3 243 40.3
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 1.3e-41 174.1 222 43.7
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 1.3e-41 174.1 223 42.6
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 8.2e-41 171.4 252 41.3
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 2.4e-40 169.9 224 42.9
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 3.1e-40 169.5 241 40.7
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 6.9e-40 168.3 200 46.5
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 3.4e-39 166.0 226 43.8
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 4.5e-39 165.6 235 40.9
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 5.9e-39 165.2 222 41.4
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.0e-38 164.5 222 41.0
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 1.3e-38 164.1 222 41.0
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.9e-37 160.2 235 42.1
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 4.2e-37 159.1 224 40.2
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 2.1e-36 156.8 248 40.3
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 2.1e-36 156.8 238 39.5
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 6.1e-36 155.2 338 31.4
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 1.3e-35 154.1 187 45.5
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 1.8e-35 153.7 183 44.3
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.8e-35 153.7 218 41.3
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 5.7e-34 148.7 243 39.9
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 8.5e-30 134.8 223 35.0
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 4.7e-28 129.0 138 52.9
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 1.1e-26 124.4 219 31.5
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 1.1e-24 117.9 221 31.2
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 5.5e-21 105.5 82 67.1
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.0e-19 101.3 218 35.3
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 1.8e-19 100.5 233 30.9
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 3.9e-19 99.4 137 45.3
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 5.2e-19 99.0 227 31.3
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 2.0e-18 97.1 81 56.8
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 3.3e-18 96.3 236 31.4
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 1.7e-17 94.0 219 28.8
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 5.3e-16 89.0 125 41.6
BcaB05g22088 Brassica carinata HOM05D005295 ORTHO05D005962 1.6e-15 87.4 85 62.4
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 1.6e-15 87.4 84 59.5
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 2.6e-15 86.7 105 47.6
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 9.4e-13 78.2 174 30.5
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 1.6e-12 77.4 96 44.8
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 6.1e-12 75.5 151 29.8
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 1.0e-11 74.7 116 33.6
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 1.0e-11 74.7 116 33.6
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 1.2e-10 71.2 116 32.8
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 1.2e-10 71.2 116 31.9
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 1.2e-10 71.2 116 32.8
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 2.0e-10 70.5 140 28.6
AagrBONN_evm.TU.Sc2ySwM_117.1842 Anthoceros agrestis HOM05D005295 ORTHO05D005962 2.4e-08 63.5 151 32.5
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 3.5e-07 59.7 89 37.1
THA.LOC104818140 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 7.7e-07 58.5 72 50.0
Ah.14g085240 Amaranthus hybridus HOM05D000490 ORTHO05D000785 1.7e-06 57.4 134 28.4
Gohir.D09G224700 Gossypium hirsutum HOM05D000490 ORTHO05D000785 1.7e-06 57.4 147 29.9
Gorai.006G246200 Gossypium raimondii HOM05D000490 ORTHO05D000785 1.7e-06 57.4 147 29.9
CARHR179960 Cardamine hirsuta HOM05D000490 ORTHO05D000785 5.0e-06 55.8 150 28.0
Gohir.A09G222601 Gossypium hirsutum HOM05D000490 ORTHO05D000785 5.0e-06 55.8 157 28.7
Carub.0001s0345 Capsella rubella HOM05D000490 ORTHO05D000785 6.5e-06 55.5 150 28.0
Duzib151G0419 Durio zibethinus HOM05D000490 ORTHO05D000785 8.5e-06 55.1 163 29.4
unitig_899.g14886 Utricularia gibba HOM05D000490 ORTHO05D000785 8.5e-06 55.1 151 27.2


User provided reference genes

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