Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 4.3e-307 1057.4 619 100.0
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 5.1e-223 778.1 601 76.7
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 6.6e-223 777.7 626 79.2
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 8.6e-223 777.3 601 79.0
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 2.5e-222 775.8 662 73.9
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 3.8e-218 761.9 616 74.4
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 6.4e-218 761.1 597 76.9
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 3.2e-217 758.8 614 76.7
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.2e-195 687.2 624 69.2
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 2.9e-194 682.6 687 64.2
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.7e-192 676.0 681 64.8
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 3.1e-188 662.5 688 62.6
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 6.3e-181 638.3 684 63.5
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 1.7e-178 630.2 696 61.8
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 3.0e-167 592.8 680 60.9
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 2.7e-147 526.6 723 53.5
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 5.0e-146 522.3 537 65.4
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 1.1e-140 504.6 644 53.9
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 1.4e-124 451.1 595 53.4
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 3.6e-120 436.4 755 45.4
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 2.4e-116 423.7 710 43.7
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 5.4e-116 422.5 724 45.4
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 1.2e-115 421.4 722 45.4
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 4.3e-113 412.9 746 41.4
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 3.6e-112 409.8 763 41.4
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 6.2e-112 409.1 709 43.0
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.1e-111 408.3 742 41.6
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 1.4e-111 407.9 755 41.9
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 1.5e-110 404.4 733 43.7
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.6e-110 403.7 709 43.6
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 9.9e-110 401.7 744 39.8
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 1.7e-109 401.0 744 40.2
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 2.2e-109 400.6 718 42.5
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 4.9e-109 399.4 641 43.2
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 1.1e-108 398.3 747 40.4
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.4e-108 397.1 714 44.0
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 3.2e-108 396.7 742 42.7
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 3.2e-108 396.7 744 40.5
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 4.1e-108 396.4 722 41.7
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 4.1e-108 396.4 748 43.0
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 9.2e-108 395.2 706 44.3
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.2e-107 394.8 714 43.8
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 1.2e-107 394.8 727 40.4
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 1.6e-107 394.4 750 40.3
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 2.1e-107 394.0 734 41.3
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.7e-107 393.7 716 44.3
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 6.0e-107 392.5 692 43.8
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 6.0e-107 392.5 747 40.0
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 7.8e-107 392.1 736 42.1
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 1.3e-106 391.3 641 44.9
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 1.7e-106 391.0 692 44.2
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 6.6e-106 389.0 710 42.4
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 1.1e-105 388.3 714 40.9
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 2.5e-105 387.1 739 41.4
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 3.3e-105 386.7 716 43.2
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 1.2e-104 384.8 707 41.3
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 1.6e-104 384.4 704 43.2
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 1.6e-104 384.4 687 41.8
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 2.1e-104 384.0 718 42.8
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 2.8e-104 383.6 590 46.4
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 1.8e-103 380.9 743 42.7
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 2.4e-103 380.6 753 42.1
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 9.0e-103 378.6 698 41.5
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 3.4e-102 376.7 711 41.1
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 3.4e-102 376.7 747 41.2
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 2.9e-101 373.6 713 41.4
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 6.4e-101 372.5 657 43.8
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 1.9e-100 370.9 738 40.7
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 3.2e-100 370.2 740 41.8
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 5.4e-100 369.4 643 43.5
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 7.1e-100 369.0 716 39.7
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 7.1e-100 369.0 790 38.0
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 9.3e-100 368.6 746 40.8
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 2.1e-99 367.5 596 44.6
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 2.1e-99 367.5 814 37.2
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 2.7e-99 367.1 743 41.6
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 4.6e-99 366.3 733 41.7
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 6.0e-99 365.9 594 44.6
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 3.0e-98 363.6 707 39.0
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 5.1e-98 362.8 712 38.9
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 2.5e-97 360.5 748 41.0
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.3e-97 359.8 733 41.6
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 5.6e-97 359.4 354 63.8
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 5.6e-97 359.4 711 39.9
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 9.6e-97 358.6 749 38.9
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.3e-96 358.2 719 39.6
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 1.4e-95 354.8 734 42.0
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 2.4e-95 354.0 546 45.6
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.5e-94 349.7 734 41.3
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 4.5e-94 349.7 707 41.4
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 5.8e-94 349.4 691 40.7
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 9.9e-94 348.6 737 41.2
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 1.3e-93 348.2 660 38.2
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 8.4e-93 345.5 702 41.6
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 1.1e-92 345.1 716 37.6
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 5.4e-92 342.8 288 70.8
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 5.4e-92 342.8 708 38.1
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 9.3e-92 342.0 714 37.7
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 1.2e-91 341.7 731 38.4
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 1.2e-91 341.7 668 41.6
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 2.7e-91 340.5 764 36.3
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 6.0e-91 339.3 714 40.5
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 6.0e-91 339.3 674 39.3
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 2.3e-90 337.4 747 41.4
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 2.3e-90 337.4 688 39.2
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 8.7e-90 335.5 699 39.3
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 8.7e-90 335.5 707 38.0
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 9.6e-89 332.0 656 39.0
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 2.8e-88 330.5 724 37.6
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.7e-88 330.1 695 39.1
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.1e-88 328.9 709 39.5
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 1.4e-87 328.2 557 43.6
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.4e-87 327.4 705 39.7
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 4.0e-87 326.6 708 39.7
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 3.4e-86 323.6 723 36.2
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 5.8e-86 322.8 755 36.8
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 7.6e-86 322.4 728 37.2
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 1.3e-85 321.6 553 43.0
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 2.2e-85 320.9 553 43.6
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 2.2e-85 320.9 647 39.6
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 5.5e-84 316.2 720 35.8
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 5.5e-84 316.2 738 39.0
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 3.9e-82 310.1 732 36.2
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 8.7e-82 308.9 651 39.5
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 1.5e-81 308.1 680 38.8
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 3.3e-81 307.0 764 35.7
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 3.7e-80 303.5 693 38.1
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 6.2e-80 302.8 728 35.3
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.4e-79 301.6 705 35.3
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 7.9e-75 285.8 700 34.7
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 3.9e-74 283.5 710 34.1
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 1.9e-73 281.2 688 34.3
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 2.8e-72 277.3 740 35.7
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 1.7e-69 268.1 734 37.3
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 1.4e-68 265.0 628 35.2
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 7.2e-68 262.7 599 34.1
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 3.7e-64 250.4 371 48.0
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 1.8e-63 248.1 371 47.7
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 6.5e-61 239.6 650 36.9
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 1.3e-56 225.3 228 60.5
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.4e-55 221.9 159 78.6
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 1.2e-51 208.8 274 46.7
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 1.2e-51 208.8 274 46.7
BcaC03g14392 Brassica carinata HOM05D003640 ORTHO05D004439 2.6e-49 201.1 133 82.0
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.2e-46 192.2 711 30.5
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 3.8e-45 187.2 247 51.0
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 1.6e-43 181.8 719 28.7
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 1.1e-36 159.1 333 38.7
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 5.5e-36 156.8 313 40.3
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.4e-34 152.1 436 33.9
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 1.8e-34 151.8 137 62.8
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 8.8e-34 149.4 708 27.4
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 1.6e-27 128.6 75 81.3
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 5.7e-25 120.2 182 48.4
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 1.3e-21 109.0 663 28.1
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 8.6e-21 106.3 102 53.9
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 1.5e-20 105.5 209 39.2
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 1.0e-18 99.4 84 65.5
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 1.0e-18 99.4 84 65.5
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 5.0e-13 80.5 54 75.9
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 4.7e-11 73.9 92 53.3
HanXRQChr11g0343691 Helianthus annuus HOM05D000954 ORTHO05D016146 6.8e-10 70.1 34 97.1
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 8.9e-10 69.7 406 26.1
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 9.8e-09 66.2 74 51.4
HanXRQChr09g0246151 Helianthus annuus HOM05D003640 ORTHO05D016146 1.3e-08 65.9 39 84.6


User provided reference genes

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