Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 1.0e-140 503.4 258 100.0
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 7.9e-53 211.5 123 88.6
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 1.1e-51 207.6 153 73.9
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 1.1e-51 207.6 153 73.9
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 5.9e-48 195.3 152 70.4
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 2.9e-47 193.0 155 67.7
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 1.9e-43 180.3 123 76.4
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 1.6e-42 177.2 153 64.7
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 6.3e-42 175.3 123 74.8
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 7.7e-40 168.3 124 71.8
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 2.2e-39 166.8 114 74.6
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 8.5e-39 164.9 153 60.8
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 1.1e-38 164.5 125 70.4
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 7.2e-38 161.8 124 67.7
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 9.4e-38 161.4 121 68.6
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 1.2e-37 161.0 182 51.1
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 2.1e-37 160.2 124 65.3
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 3.6e-37 159.5 152 61.2
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 6.1e-37 158.7 121 67.8
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 7.9e-37 158.3 182 51.1
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 1.4e-36 157.5 124 66.1
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 1.4e-36 157.5 121 69.4
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.4e-36 157.5 117 68.4
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 1.8e-36 157.1 181 52.5
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 2.3e-36 156.8 156 57.7
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 2.3e-36 156.8 140 60.7
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 2.3e-36 156.8 140 60.7
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 2.3e-36 156.8 140 60.7
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 3.0e-36 156.4 124 63.7
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 3.0e-36 156.4 121 66.1
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 3.9e-36 156.0 124 63.7
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 5.1e-36 155.6 121 67.8
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 5.1e-36 155.6 124 62.9
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 5.1e-36 155.6 124 65.3
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 6.7e-36 155.2 124 63.7
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 6.7e-36 155.2 121 65.3
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 6.7e-36 155.2 124 63.7
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 6.7e-36 155.2 121 65.3
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 8.8e-36 154.8 131 62.6
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 8.8e-36 154.8 131 62.6
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 8.8e-36 154.8 124 65.3
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 8.8e-36 154.8 143 58.7
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 8.8e-36 154.8 139 60.4
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 8.8e-36 154.8 120 67.5
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 1.1e-35 154.5 177 51.4
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 1.1e-35 154.5 142 57.7
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 1.5e-35 154.1 124 65.3
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 1.5e-35 154.1 124 64.5
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 2.0e-35 153.7 150 56.7
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 2.5e-35 153.3 150 56.0
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 2.5e-35 153.3 124 62.9
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 2.5e-35 153.3 131 60.3
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 2.5e-35 153.3 124 62.1
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 4.3e-35 152.5 131 61.8
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 5.7e-35 152.1 133 62.4
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 5.7e-35 152.1 119 65.5
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 7.4e-35 151.8 121 64.5
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 9.7e-35 151.4 186 48.4
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 9.7e-35 151.4 124 64.5
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 9.7e-35 151.4 124 62.1
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 1.3e-34 151.0 124 62.9
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 1.3e-34 151.0 121 65.3
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 1.7e-34 150.6 131 63.4
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.7e-34 150.6 131 63.4
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.7e-34 150.6 131 63.4
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 1.7e-34 150.6 184 49.5
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 1.7e-34 150.6 124 63.7
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 2.2e-34 150.2 131 62.6
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 2.2e-34 150.2 124 62.1
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 2.2e-34 150.2 131 62.6
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 2.2e-34 150.2 121 64.5
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 2.2e-34 150.2 124 61.3
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 2.8e-34 149.8 124 60.5
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 2.8e-34 149.8 123 62.6
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 4.8e-34 149.1 131 62.6
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 8.2e-34 148.3 99 75.8
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 8.2e-34 148.3 117 65.0
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 1.1e-33 147.9 143 56.6
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 1.1e-33 147.9 149 53.7
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 1.4e-33 147.5 116 65.5
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.4e-33 147.5 115 66.1
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.4e-33 147.5 115 66.1
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.8e-33 147.1 115 67.8
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.8e-33 147.1 151 55.0
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 2.4e-33 146.7 124 58.9
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 3.1e-33 146.4 127 61.4
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 3.1e-33 146.4 149 53.0
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 4.1e-33 146.0 100 72.0
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 4.1e-33 146.0 100 72.0
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 5.3e-33 145.6 114 65.8
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 5.3e-33 145.6 117 66.7
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 6.9e-33 145.2 119 63.0
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 6.9e-33 145.2 124 58.1
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 2.0e-32 143.7 121 62.8
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 3.4e-32 142.9 118 61.0
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 3.4e-32 142.9 104 71.2
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 4.5e-32 142.5 126 61.1
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 4.5e-32 142.5 143 54.5
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 4.5e-32 142.5 143 54.5
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 4.5e-32 142.5 100 72.0
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 4.5e-32 142.5 119 58.8
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.0e-31 141.4 121 58.7
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.0e-31 141.4 121 58.7
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 1.3e-31 141.0 122 63.1
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 1.3e-31 141.0 135 55.6
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 2.2e-31 140.2 117 61.5
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 6.5e-31 138.7 157 51.6
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 8.5e-31 138.3 89 75.3
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 1.4e-30 137.5 197 44.7
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 2.5e-30 136.7 89 74.2
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 3.2e-30 136.3 93 74.2
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.6e-29 134.0 121 56.2
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 4.4e-27 125.9 127 55.9
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 5.7e-27 125.6 153 48.4
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 3.7e-26 122.9 132 53.8
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 4.5e-24 115.9 75 74.7
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 1.9e-22 110.5 121 52.9
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 1.8e-20 104.0 131 47.3
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 2.0e-19 100.5 124 46.0
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 3.5e-16 89.7 190 35.8
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 1.7e-15 87.4 100 50.0
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 2.9e-15 86.7 122 43.4
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 1.1e-14 84.7 90 51.1
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 8.8e-12 75.1 56 66.1
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 1.2e-11 74.7 81 50.6
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 3.7e-10 69.7 85 47.1


User provided reference genes

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