Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 1.6e-53 212.6 115 100.0
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 2.5e-27 125.6 243 39.5
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 3.1e-25 118.6 254 37.0
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 6.9e-25 117.5 257 36.6
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 6.9e-25 117.5 254 37.0
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 1.5e-24 116.3 257 36.6
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 2.6e-24 115.5 254 36.2
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 5.9e-24 114.4 254 35.8
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 1.7e-23 112.8 253 36.0
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 2.9e-23 112.1 255 35.7
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 1.9e-22 109.4 253 36.0
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 5.5e-22 107.8 253 36.0
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 6.1e-21 104.4 253 36.0
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 6.1e-21 104.4 255 33.3
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 5.1e-20 101.3 202 36.1
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 5.7e-19 97.8 253 32.8
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 2.2e-18 95.9 48 93.8
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.2e-16 90.1 56 78.6
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 2.0e-16 89.4 204 38.2
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 1.7e-15 86.3 258 29.1
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.7e-15 86.3 258 29.1
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 8.5e-15 84.0 258 28.7
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 1.1e-14 83.6 62 77.4
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.9e-14 82.8 62 74.2
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 7.2e-14 80.9 62 75.8
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 1.2e-13 80.1 62 74.2
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 1.2e-13 80.1 250 30.0
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.2e-13 80.1 259 28.2
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 2.1e-13 79.3 260 28.8
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 2.1e-13 79.3 62 72.6
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.1e-13 79.3 117 47.9
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.1e-13 79.3 117 47.9
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 2.1e-13 79.3 62 72.6
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 4.6e-13 78.2 253 30.0
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 4.6e-13 78.2 117 47.9
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 6.1e-13 77.8 259 27.8
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 6.1e-13 77.8 62 74.2
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 6.1e-13 77.8 259 29.0
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 7.9e-13 77.4 248 29.8
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 7.9e-13 77.4 84 56.0
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 7.9e-13 77.4 259 28.6
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 7.9e-13 77.4 76 60.5
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 1.0e-12 77.0 260 28.8
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.4e-12 76.6 62 69.4
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.4e-12 76.6 259 27.4
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.4e-12 76.6 260 28.5
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 2.3e-12 75.9 62 71.0
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 2.3e-12 75.9 62 71.0
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 3.0e-12 75.5 259 28.2
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 3.0e-12 75.5 249 29.3
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 3.9e-12 75.1 76 59.2
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.9e-12 75.1 62 71.0
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 3.9e-12 75.1 258 28.7
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 3.9e-12 75.1 97 51.5
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 5.1e-12 74.7 259 29.0
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 5.1e-12 74.7 259 29.0
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 6.7e-12 74.3 113 46.9
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 6.7e-12 74.3 62 67.7
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 6.7e-12 74.3 260 28.8
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 6.7e-12 74.3 256 28.1
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 6.7e-12 74.3 257 28.8
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 6.7e-12 74.3 113 46.9
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 8.8e-12 73.9 261 29.5
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 8.8e-12 73.9 76 59.2
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 8.8e-12 73.9 62 71.0
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 1.1e-11 73.6 76 60.5
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 1.1e-11 73.6 259 28.2
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 1.1e-11 73.6 76 59.2
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 1.5e-11 73.2 256 28.1
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.5e-11 72.4 62 71.0
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 2.5e-11 72.4 62 71.0
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 2.5e-11 72.4 62 66.1
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 3.3e-11 72.0 62 66.1
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 4.3e-11 71.6 62 69.4
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.3e-11 71.6 62 67.7
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 4.3e-11 71.6 251 29.1
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 5.7e-11 71.2 117 44.4
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 7.4e-11 70.9 60 58.3
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 7.4e-11 70.9 117 46.2
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 7.4e-11 70.9 260 28.8
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 9.7e-11 70.5 260 28.5
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 9.7e-11 70.5 76 56.6
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.3e-10 70.1 251 28.7
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.3e-10 70.1 251 28.7
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.3e-10 70.1 251 28.7
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.3e-10 70.1 62 64.5
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 1.3e-10 70.1 117 44.4
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 1.7e-10 69.7 60 58.3
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 2.2e-10 69.3 251 28.3
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 3.7e-10 68.6 62 64.5
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 4.8e-10 68.2 65 67.7
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 8.2e-10 67.4 64 57.8
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 8.2e-10 67.4 251 27.9
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 1.4e-09 66.6 62 61.3
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.4e-09 66.6 62 62.9
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 4.1e-09 65.1 250 27.6
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 4.1e-09 65.1 76 51.3
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 5.3e-09 64.7 62 53.2
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 6.9e-09 64.3 117 43.6
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 6.9e-09 64.3 117 43.6
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 9.1e-09 63.9 63 57.1
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 9.1e-09 63.9 62 53.2
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 9.1e-09 63.9 62 50.0
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 9.1e-09 63.9 62 50.0
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 2.0e-08 62.8 62 50.0
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 2.0e-08 62.8 61 50.8
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 2.0e-08 62.8 63 52.4
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 2.0e-08 62.8 62 51.6
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 2.0e-08 62.8 62 51.6
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 2.6e-08 62.4 62 50.0
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 3.4e-08 62.0 76 52.6
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 3.4e-08 62.0 76 52.6
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.4e-08 62.0 54 51.9
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 3.4e-08 62.0 61 59.0
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 4.5e-08 61.6 76 53.9
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 4.5e-08 61.6 93 46.2
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 5.9e-08 61.2 117 44.4
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 5.9e-08 61.2 67 46.3
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 7.7e-08 60.8 260 26.2
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 7.7e-08 60.8 57 52.6
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.3e-07 60.1 52 53.8
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 1.3e-07 60.1 62 48.4
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.7e-07 59.7 68 48.5
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 2.9e-07 58.9 62 50.0
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 2.9e-07 58.9 60 48.3
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 6.5e-07 57.8 52 53.8
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 6.5e-07 57.8 45 73.3
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 6.5e-07 57.8 52 53.8
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 8.5e-07 57.4 68 44.1
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.1e-06 57.0 62 61.3
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.1e-06 57.0 43 58.1
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 1.4e-06 56.6 66 47.0
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 3.2e-06 55.5 58 56.9
BcaB05g21557 Brassica carinata HOM05D000313 ORTHO05D000065 9.4e-06 53.9 36 69.4


User provided reference genes

Program Settings