Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21996 Brassica carinata HOM05D006023 ORTHO05D007377 1.8e-111 406.0 213 100.0
A02p11390 Brassica napus HOM05D006023 ORTHO05D007377 3.3e-105 385.2 213 95.8
C02p18900 Brassica napus HOM05D006023 ORTHO05D007377 1.3e-104 383.3 213 94.8
BolC2t08031H Brassica oleracea HOM05D006023 ORTHO05D007377 1.3e-104 383.3 213 94.8
BraA02t06203Z Brassica rapa HOM05D006023 ORTHO05D007377 2.8e-104 382.1 213 95.3
A10p10460 Brassica napus HOM05D006023 ORTHO05D007377 2.4e-103 379.0 214 94.4
Thhalv10014686m.g Eutrema salsugineum HOM05D006023 ORTHO05D007377 6.9e-103 377.5 213 93.9
BcaC03g14468 Brassica carinata HOM05D006023 ORTHO05D007377 1.2e-102 376.7 213 94.8
AL8G27520 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 8.4e-101 370.5 216 90.3
Sp6g15140 Schrenkiella parvula HOM05D006023 ORTHO05D007377 1.1e-100 370.2 213 93.0
C09p42690 Brassica napus HOM05D006023 ORTHO05D007377 5.4e-100 367.9 220 89.5
BolC9t57145H Brassica oleracea HOM05D006023 ORTHO05D007377 5.4e-100 367.9 220 89.5
BraA10t43129Z Brassica rapa HOM05D006023 ORTHO05D007377 1.0e-98 363.6 216 89.8
Carub.0008s1318 Capsella rubella HOM05D006023 ORTHO05D007377 1.0e-98 363.6 217 89.4
AL8G27580 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 3.3e-97 358.6 213 88.3
AT5G52980 Arabidopsis thaliana HOM05D006023 ORTHO05D007377 1.6e-96 356.3 223 85.2
CARHR265970 Cardamine hirsuta HOM05D006023 ORTHO05D007377 3.1e-95 352.1 213 86.4
Aa31LG3G9490 Aethionema arabicum HOM05D006023 ORTHO05D007377 2.0e-86 322.8 213 80.8
AL4G21070 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 3.5e-83 312.0 215 80.0
THA.LOC104806716 Tarenaya hassleriana HOM05D006023 ORTHO05D007377 1.8e-79 299.7 204 77.5
Actinidia14795 Actinidia chinensis HOM05D006023 ORTHO05D007377 2.2e-69 266.2 197 70.6
CSS0050040 Camellia sinensis var. sinensis HOM05D006023 ORTHO05D007377 1.2e-67 260.4 203 70.0
Dinv28972 Davidia involucrata HOM05D006023 ORTHO05D007377 2.7e-67 259.2 210 67.6
Manes.02G087300 Manihot esculenta HOM05D006023 ORTHO05D007377 6.1e-67 258.1 208 67.3
Peaxi162Scf00184g00013 Petunia axillaris HOM05D006023 ORTHO05D007377 6.1e-67 258.1 204 68.6
Cfa012466 Carpinus fangiana HOM05D006023 ORTHO05D007377 1.8e-66 256.5 209 66.5
CsaV3_6G000520 Cucumis sativus L. HOM05D006023 ORTHO05D007377 2.3e-66 256.1 192 70.3
Prupe.5G032500 Prunus persica HOM05D006023 ORTHO05D007377 2.3e-66 256.1 209 66.0
MELO3C021213.2 Cucumis melo HOM05D006023 ORTHO05D007377 3.0e-66 255.8 192 69.8
Hma1.2p1_1379F.1_g279210 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 3.0e-66 255.8 204 66.2
PGSC0003DMG400027709 Solanum tuberosum HOM05D006023 ORTHO05D007377 5.1e-66 255.0 204 68.1
Sopen08g025290 Solanum pennellii HOM05D006023 ORTHO05D007377 8.8e-66 254.2 204 67.2
Migut.F00744 Erythranthe guttata HOM05D006023 ORTHO05D007377 7.4e-65 251.1 203 67.0
FAN18G1789 Fragaria x ananassa HOM05D006023 ORTHO05D007377 7.4e-65 251.1 212 64.2
Nitab4.5_0004555g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 7.4e-65 251.1 203 67.5
Glyma.10G212800 Glycine max HOM05D006023 ORTHO05D007377 9.7e-65 250.8 213 63.8
PSO782G2387 Papaver somniferum HOM05D006023 ORTHO05D007377 1.3e-64 250.4 199 65.8
FvH4_5g22440 Fragaria vesca HOM05D006023 ORTHO05D007377 1.7e-64 250.0 212 64.2
SGA_v2.0_scaffold6G03147 Striga asiatica HOM05D006023 ORTHO05D007377 1.7e-64 250.0 204 66.7
COL.COLO4_16998 Corchorus olitorius HOM05D006023 ORTHO05D007377 2.2e-64 249.6 213 65.3
Sc01g0007360 Simmondsia chinensis HOM05D006023 ORTHO05D007377 2.2e-64 249.6 215 65.6
arahy.Tifrunner.gnm1.ann1.NMD1RU Arachis hypogaea HOM05D006023 ORTHO05D007377 2.8e-64 249.2 209 64.1
arahy.Tifrunner.gnm1.ann1.T01SKW Arachis hypogaea HOM05D006023 ORTHO05D007377 4.8e-64 248.4 209 63.6
Gohir.D08G176200 Gossypium hirsutum HOM05D006023 ORTHO05D007377 4.8e-64 248.4 213 63.8
Gorai.004G184000 Gossypium raimondii HOM05D006023 ORTHO05D007377 4.8e-64 248.4 213 63.8
Lj2A236G57 Lonicera japonica HOM05D006023 ORTHO05D007377 6.3e-64 248.1 198 64.6
FAN08G2226 Fragaria x ananassa HOM05D006023 ORTHO05D007377 8.2e-64 247.7 212 63.2
FAN13G0319 Fragaria x ananassa HOM05D006023 ORTHO05D007377 8.2e-64 247.7 212 63.2
Glyma.20G178200 Glycine max HOM05D006023 ORTHO05D007377 8.2e-64 247.7 213 64.8
FAN04G1629 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.1e-63 247.3 210 63.3
Nn5g27684 Nelumbo nucifera HOM05D006023 ORTHO05D007377 1.1e-63 247.3 206 65.5
Actinidia09185 Actinidia chinensis HOM05D006023 ORTHO05D007377 1.4e-63 246.9 209 66.0
Gohir.A08G155600 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.8e-63 246.5 213 62.9
TWI81G0073 Tripterygium wilfordii HOM05D006023 ORTHO05D007377 1.8e-63 246.5 200 66.0
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 1.8e-63 246.5 214 64.0
arahy.Tifrunner.gnm1.ann1.7BP5M1 Arachis hypogaea HOM05D006023 ORTHO05D007377 2.4e-63 246.1 209 63.2
CiPaw.12G065700 Carya illinoinensis HOM05D006023 ORTHO05D007377 2.4e-63 246.1 209 65.6
Cc08_g03000 Coffea canephora HOM05D006023 ORTHO05D007377 2.4e-63 246.1 203 64.5
PGR031G2123 Punica granatum HOM05D006023 ORTHO05D007377 3.1e-63 245.7 212 64.6
Sed0006289 Sechium edule HOM05D006023 ORTHO05D007377 3.1e-63 245.7 191 70.2
TPR.G1759 Trifolium pratense HOM05D006023 ORTHO05D007377 3.1e-63 245.7 215 62.8
Nitab4.5_0002808g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 5.3e-63 245.0 191 67.5
Potri.003G093800 Populus trichocarpa HOM05D006023 ORTHO05D007377 5.3e-63 245.0 211 65.4
CANSAT21G1027 Cannabis sativa HOM05D006023 ORTHO05D007377 6.9e-63 244.6 198 63.6
Phvul.007G092700 Phaseolus vulgaris HOM05D006023 ORTHO05D007377 6.9e-63 244.6 212 64.2
Gohir.A06G181300 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.5e-62 243.4 213 62.4
Thecc.08G177100 Theobroma cacao HOM05D006023 ORTHO05D007377 1.5e-62 243.4 209 64.1
Lalb_Chr17g0341511 Lupinus albus HOM05D006023 ORTHO05D007377 2.0e-62 243.0 208 64.4
Sopen10g027320 Solanum pennellii HOM05D006023 ORTHO05D007377 2.6e-62 242.7 204 64.7
Ca_10583_v3 Cicer arietinum L. HOM05D006023 ORTHO05D007377 1.3e-61 240.4 207 63.3
Gohir.D06G188100 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.7e-61 240.0 203 64.0
Gorai.010G220500 Gossypium raimondii HOM05D006023 ORTHO05D007377 1.7e-61 240.0 203 63.5
Oeu006244.1 Olea europaea HOM05D006023 ORTHO05D007377 1.7e-61 240.0 206 62.6
TAR375G0242 Trochodendron aralioides HOM05D006023 ORTHO05D007377 1.7e-61 240.0 206 64.1
Cpa.g.c32853 Carica papaya HOM05D006023 ORTHO05D007377 2.2e-61 239.6 213 62.0
Eucgr.D02210 Eucalyptus grandis HOM05D006023 ORTHO05D007377 2.2e-61 239.6 203 65.5
Aqoxy4G02643 Aquilegia oxysepala HOM05D006023 ORTHO05D007377 3.8e-61 238.8 199 62.3
Lj5g0000896 Lotus japonicus HOM05D006023 ORTHO05D007377 3.8e-61 238.8 207 63.8
Medtr1g095620 Medicago truncatula HOM05D006023 ORTHO05D007377 3.8e-61 238.8 208 63.5
Atru.chr6.1650 Acer truncatum HOM05D006023 ORTHO05D007377 5.0e-61 238.4 200 64.5
Hund11133 Selenicereus undatus HOM05D006023 ORTHO05D007377 6.5e-61 238.0 203 64.0
RcHm_v2.0_Chr7g0210231 Rosa chinensis HOM05D006023 ORTHO05D007377 1.4e-60 236.9 215 61.9
GSVIVG01013134001 Vitis vinifera HOM05D006023 ORTHO05D007377 3.2e-60 235.7 213 61.5
PSO675G2981 Papaver somniferum HOM05D006023 ORTHO05D007377 9.4e-60 234.2 191 63.4
RcHm_v2.0_Chr7g0210201 Rosa chinensis HOM05D006023 ORTHO05D007377 2.1e-59 233.0 203 63.5
Hma1.2p1_0303F.1_g118960 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 7.9e-59 231.1 212 60.8
Lsat_1_v5_gn_6_80341 Lactuca sativa HOM05D006023 ORTHO05D007377 1.8e-58 229.9 204 60.8
SGA_v2.0_scaffold196G40921 Striga asiatica HOM05D006023 ORTHO05D007377 3.0e-58 229.2 197 64.0
ECA240G0359 Erigeron canadensis HOM05D006023 ORTHO05D007377 3.9e-58 228.8 191 61.8
Ah.07g200580 Amaranthus hybridus HOM05D006023 ORTHO05D007377 1.1e-57 227.3 195 61.0
Rhsim07G0128700 Rhododendron simsii HOM05D006023 ORTHO05D007377 1.5e-57 226.9 241 56.0
MBI04_g41609_MAGBIO Magnolia biondii HOM05D006023 ORTHO05D007377 9.7e-57 224.2 212 59.0
MD06G1036800 Malus domestica HOM05D006023 ORTHO05D007377 2.8e-56 222.6 208 60.1
HPP92_020908 Vanilla planifolia HOM05D006023 ORTHO05D007377 4.8e-56 221.9 210 56.2
EL10Ac5g12082 Beta vulgaris HOM05D006023 ORTHO05D007377 6.3e-56 221.5 206 60.7
DCAR_004289 Daucus carota HOM05D006023 ORTHO05D007377 8.2e-56 221.1 212 58.0
Hma1.2p1_0574F.1_g181560 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 2.4e-55 219.5 155 69.0
Hma1.2p1_1379F.1_g279205 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 2.4e-55 219.5 155 69.0
PSO541G2859 Papaver somniferum HOM05D006023 ORTHO05D007377 2.6e-54 216.1 168 64.9
unitig_21.g20896 Utricularia gibba HOM05D006023 ORTHO05D007377 2.2e-53 213.0 204 56.9
Psat6g182880 Pisum sativum HOM05D006023 ORTHO05D007377 7.2e-52 208.0 161 68.9
Ciclev10022247m.g Citrus clementina HOM05D006023 ORTHO05D007377 1.0e-50 204.1 161 65.8
HanXRQChr13g0414191 Helianthus annuus HOM05D006023 ORTHO05D007377 4.4e-49 198.7 157 63.1
ATR0665G562 Amborella trichopoda HOM05D006023 ORTHO05D007377 5.7e-49 198.4 184 57.1
CAN.G298.27 Capsicum annuum HOM05D006023 ORTHO05D007377 3.5e-46 189.1 141 73.0
Zm00001eb024850 Zea mays HOM05D006023 ORTHO05D007377 1.9e-44 183.3 157 61.1
vmacro14181 Vaccinium macrocarpon HOM05D006023 ORTHO05D007377 9.4e-44 181.0 366 36.3
CDE06G2650 Ceratophyllum demersum HOM05D006023 ORTHO05D007377 3.7e-40 169.1 191 51.8
Solyc08g076770.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 2.4e-39 166.4 128 66.4
PGSC0003DMG400017522 Solanum tuberosum HOM05D006023 ORTHO05D007377 4.5e-38 162.2 132 63.6
BcaNung06895 Brassica carinata HOM05D006023 ORTHO05D007377 6.5e-37 158.3 89 85.4
Mapoly0102s0011 Marchantia polymorpha HOM05D006023 ORTHO05D007377 9.4e-36 154.5 200 43.5
MSTRG.15799 Avicennia marina HOM05D006023 ORTHO05D007377 2.7e-35 152.9 119 70.6
PSO063G6826 Papaver somniferum HOM05D006023 ORTHO05D007377 4.0e-34 149.1 117 68.4
Pp3c18_16040 Physcomitrium patens HOM05D006023 ORTHO05D007377 3.4e-33 146.0 193 42.0
AUR62018698 Chenopodium quinoa HOM05D006023 ORTHO05D007377 5.7e-33 145.2 125 68.0
FAN18G1032 Fragaria x ananassa HOM05D006023 ORTHO05D007377 7.0e-31 138.3 136 55.9
ClCG06G003760 Citrullus lanatus HOM05D006023 ORTHO05D007377 4.5e-30 135.6 109 66.1
Duzib068G1405 Durio zibethinus HOM05D006023 ORTHO05D007377 4.5e-30 135.6 133 60.2
CBR_g88177 Chara braunii HOM05D006023 ORTHO05D007377 5.6e-28 128.6 201 41.8
SMO143G0066 Selaginella moellendorffii HOM05D006023 ORTHO05D007377 4.9e-24 115.5 194 34.5
Dinv25231 Davidia involucrata HOM05D006023 ORTHO05D007377 2.4e-23 113.2 76 76.3
AagrBONN_evm.TU.Sc2ySwM_228.1949 Anthoceros agrestis HOM05D006023 ORTHO05D007377 4.6e-22 109.0 134 49.3
SEGI_27853 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 9.5e-20 101.3 127 48.8
Solyc08g076740.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 2.3e-18 96.7 78 69.2
FAN18G2414 Fragaria x ananassa HOM05D006023 ORTHO05D007377 5.8e-17 92.0 78 65.4
AUR62007305 Chenopodium quinoa HOM05D006023 ORTHO05D007377 5.0e-13 79.0 77 61.0
Cre10.g438750 Chlamydomonas reinhardtii HOM05D006023 ORTHO05D007377 8.6e-13 78.2 186 29.6
Solyc10g074822.1 Solanum lycopersicum HOM05D006023 ORTHO05D007377 8.6e-13 78.2 47 78.7
MD16G1272600 Malus domestica HOM05D006023 ORTHO05D007377 5.6e-12 75.5 59 61.0
SEGI_36898 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 8.9e-10 68.2 55 60.0
Os02g0225300 Oryza sativa ssp. japonica HOM05D006023 ORTHO05D007377 1.1e-07 61.2 60 51.7


User provided reference genes

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