Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 0.0e+00 1253.8 641 100.0
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 1.2e-256 889.8 946 57.2
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 4.7e-256 887.9 947 57.1
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 3.0e-255 885.2 946 57.0
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 8.9e-255 883.6 955 57.0
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 9.8e-254 880.2 947 56.9
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 4.3e-249 864.8 944 56.0
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 2.6e-246 855.5 954 55.8
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 3.3e-241 838.6 951 54.7
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 3.3e-241 838.6 951 54.7
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 3.1e-239 832.0 954 54.2
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 7.8e-235 817.4 946 53.7
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 1.5e-230 803.1 953 53.4
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 3.0e-226 788.9 955 52.1
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 2.2e-189 666.4 952 46.7
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 3.1e-143 513.1 976 38.4
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 2.4e-119 433.7 311 76.8
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 9.6e-100 368.6 997 32.1
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 1.3e-99 368.2 997 32.2
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 1.6e-94 351.3 1007 31.7
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 1.4e-90 338.2 997 31.1
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 5.3e-90 336.3 1028 31.1
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 4.5e-89 333.2 949 32.6
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 2.2e-88 330.9 1021 30.9
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 6.4e-88 329.3 1012 30.5
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 7.1e-87 325.9 1018 30.6
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 1.0e-85 322.0 1001 30.5
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 1.3e-85 321.6 1063 28.6
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 1.1e-84 318.5 1009 30.1
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 1.9e-84 317.8 998 30.6
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 2.4e-82 310.8 1009 29.9
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 4.0e-82 310.1 1006 30.4
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 1.3e-80 305.1 1007 29.5
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 2.9e-80 303.9 327 54.1
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 3.3e-76 290.4 1003 28.8
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 7.4e-76 289.3 998 28.7
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.2e-73 282.0 1001 27.9
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.4e-73 280.4 1001 27.9
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 2.9e-72 277.3 1025 29.5
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 3.8e-72 276.9 998 27.8
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.2e-71 273.9 1004 27.4
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.0e-69 268.9 997 28.0
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 8.8e-69 265.8 975 27.7
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 1.5e-68 265.0 983 28.6
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 4.8e-67 260.0 1007 29.1
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 6.3e-67 259.6 955 28.8
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 1.1e-66 258.8 1037 26.3
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 4.1e-66 256.9 1037 26.1
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 8.5e-64 249.2 999 28.0
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 3.2e-63 247.3 985 28.1
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 1.2e-62 245.4 984 27.7
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 2.3e-61 241.1 1013 27.9
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 5.1e-61 240.0 876 27.5
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 2.6e-60 237.7 1016 25.5
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 3.3e-60 237.3 985 27.3
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 3.3e-60 237.3 975 28.5
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 2.2e-59 234.6 954 27.8
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 2.8e-59 234.2 948 28.0
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 2.4e-58 231.1 1003 26.5
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 2.4e-58 231.1 948 28.0
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 5.3e-58 229.9 1014 27.5
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 9.1e-58 229.2 1019 27.5
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 2.2e-56 224.6 976 28.0
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 2.9e-56 224.2 947 28.0
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 3.8e-56 223.8 664 33.3
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 6.5e-56 223.0 993 26.7
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 6.5e-56 223.0 984 27.6
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.6e-54 218.4 960 27.2
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 3.6e-54 217.2 812 29.7
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 8.0e-54 216.1 972 28.2
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 5.2e-53 213.4 983 26.6
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 5.2e-53 213.4 953 26.9
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 8.8e-53 212.6 337 41.5
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.5e-52 211.8 961 26.7
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 2.0e-52 211.5 947 26.7
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 2.6e-52 211.1 964 26.9
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 3.3e-52 210.7 989 26.5
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 3.3e-52 210.7 992 26.7
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 7.4e-52 209.5 985 25.3
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 1.3e-51 208.8 965 25.6
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 1.3e-51 208.8 946 26.4
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 1.3e-51 208.8 976 26.9
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 1.7e-51 208.4 990 26.2
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 1.7e-51 208.4 982 26.2
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 2.8e-51 207.6 961 27.5
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 2.8e-51 207.6 995 26.0
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 3.7e-51 207.2 359 41.2
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 1.1e-50 205.7 959 26.7
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 2.4e-50 204.5 662 31.9
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 5.3e-50 203.4 888 27.4
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.2e-49 202.2 314 43.3
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 1.0e-48 199.1 957 27.0
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 3.2e-47 194.1 314 40.1
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 4.2e-47 193.7 317 41.6
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 2.1e-46 191.4 360 39.2
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 3.6e-46 190.7 357 38.7
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 4.7e-46 190.3 361 40.4
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 1.5e-44 185.3 320 39.4
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 2.0e-44 184.9 364 39.3
BcaB08g35657 Brassica carinata HOM05D005720 ORTHO05D006984 9.7e-44 182.6 165 60.0
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 1.3e-43 182.2 990 25.8
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 2.2e-43 181.4 307 40.7
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.7e-43 180.6 346 37.9
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 3.1e-42 177.6 349 38.7
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 5.5e-39 166.8 249 43.8
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 4.7e-38 163.7 895 25.5
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 8.0e-38 162.9 358 36.3
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 8.8e-37 159.5 908 24.0
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 5.7e-36 156.8 296 36.1
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 2.4e-34 151.4 410 33.4
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 9.1e-34 149.4 355 38.0
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 1.7e-32 145.2 999 23.1
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 5.0e-32 143.7 298 36.2
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 1.2e-30 139.0 250 40.8
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 1.2e-30 139.0 352 32.4
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 1.5e-28 132.1 736 25.3
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 3.4e-28 131.0 189 42.9
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 8.3e-27 126.3 316 31.6
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 5.4e-26 123.6 758 26.8
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 9.2e-26 122.9 348 33.3
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 2.8e-22 111.3 214 33.6
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 2.4e-10 71.6 180 35.6
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 7.1e-10 70.1 88 53.4
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 1.1e-07 62.8 210 27.1
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 2.1e-06 58.5 82 46.3
Mapoly0039s0001 Marchantia polymorpha HOM05D005720 ORTHO05D006984 2.8e-06 58.2 149 29.5


User provided reference genes

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