Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21990 Brassica carinata HOM05D002932 ORTHO05D003208 7.4e-127 457.2 231 100.0
BolC2t08047H Brassica oleracea HOM05D002932 ORTHO05D003208 1.4e-112 409.8 226 92.0
A02p11520 Brassica napus HOM05D002932 ORTHO05D003208 9.7e-111 403.7 226 90.7
C02p19170 Brassica napus HOM05D002932 ORTHO05D003208 1.3e-110 403.3 218 93.1
BcaC03g14485 Brassica carinata HOM05D002932 ORTHO05D003208 3.1e-109 398.7 218 92.2
BraA02t06216Z Brassica rapa HOM05D002932 ORTHO05D003208 2.0e-108 396.0 220 91.4
Sp6g15070 Schrenkiella parvula HOM05D002932 ORTHO05D003208 8.5e-107 390.6 237 86.1
A03p15470 Brassica napus HOM05D002932 ORTHO05D003208 3.6e-97 358.6 236 81.8
BraA03t10842Z Brassica rapa HOM05D002932 ORTHO05D003208 3.6e-97 358.6 236 81.8
Thhalv10014576m.g Eutrema salsugineum HOM05D002932 ORTHO05D003208 8.0e-97 357.5 237 82.3
A10p10380 Brassica napus HOM05D002932 ORTHO05D003208 1.4e-96 356.7 233 82.8
C09p42630 Brassica napus HOM05D002932 ORTHO05D003208 1.4e-96 356.7 233 82.8
BolC9t57139H Brassica oleracea HOM05D002932 ORTHO05D003208 1.4e-96 356.7 233 82.8
BraA10t43121Z Brassica rapa HOM05D002932 ORTHO05D003208 1.4e-96 356.7 233 82.8
BcaC04g20524 Brassica carinata HOM05D002932 ORTHO05D003208 3.0e-96 355.5 229 83.4
AT5G52900 Arabidopsis thaliana HOM05D002932 ORTHO05D003208 1.2e-95 353.6 238 80.7
BcaB08g35654 Brassica carinata HOM05D002932 ORTHO05D003208 2.0e-95 352.8 239 80.8
BcaC01g06213 Brassica carinata HOM05D002932 ORTHO05D003208 2.0e-95 352.8 237 81.0
C03p18060 Brassica napus HOM05D002932 ORTHO05D003208 1.7e-94 349.7 236 80.5
BolC3t14211H Brassica oleracea HOM05D002932 ORTHO05D003208 1.7e-94 349.7 236 80.5
CARHR265860 Cardamine hirsuta HOM05D002932 ORTHO05D003208 1.1e-93 347.1 242 77.7
BcaB01g04222 Brassica carinata HOM05D002932 ORTHO05D003208 3.1e-93 345.5 236 79.7
AL8G27370 Arabidopsis lyrata HOM05D002932 ORTHO05D003208 1.9e-90 336.3 237 78.1
Carub.0008s1309 Capsella rubella HOM05D002932 ORTHO05D003208 5.8e-71 271.6 245 68.2
Aa31LG3G9150 Aethionema arabicum HOM05D002932 ORTHO05D003208 2.1e-52 209.9 252 56.3
THA.LOC104825123 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 1.8e-48 196.8 247 55.5
THA.LOC104811937 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 7.6e-47 191.4 246 55.7
Sabra12G0024300 Salix brachista HOM05D002932 ORTHO05D003208 3.4e-31 139.4 239 47.3
FvH4_7g30650 Fragaria vesca HOM05D002932 ORTHO05D003208 1.7e-30 137.1 257 44.4
FAN06G0995 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.7e-30 137.1 257 44.4
TPR.G7742 Trifolium pratense HOM05D002932 ORTHO05D003208 3.8e-30 136.0 239 43.9
Psat1g099240 Pisum sativum HOM05D002932 ORTHO05D003208 4.9e-30 135.6 240 42.1
Potri.015G026600 Populus trichocarpa HOM05D002932 ORTHO05D003208 6.4e-30 135.2 239 48.1
FAN10G0880 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.1e-29 134.4 257 43.6
FAN10G1573 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.1e-29 134.4 257 43.6
arahy.Tifrunner.gnm1.ann1.N7QM32 Arachis hypogaea HOM05D002932 ORTHO05D003208 1.4e-29 134.0 256 39.8
Glyma.09G126400 Glycine max HOM05D002932 ORTHO05D003208 1.4e-29 134.0 239 45.6
Medtr1g099440 Medicago truncatula HOM05D002932 ORTHO05D003208 1.4e-29 134.0 227 44.9
Potri.012G035200 Populus trichocarpa HOM05D002932 ORTHO05D003208 1.4e-29 134.0 243 46.5
Phvul.007G077100 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 1.9e-29 133.7 238 44.5
QL09p012032 Quercus lobata HOM05D002932 ORTHO05D003208 2.4e-29 133.3 240 44.2
arahy.Tifrunner.gnm1.ann1.M5AIDB Arachis hypogaea HOM05D002932 ORTHO05D003208 5.4e-29 132.1 255 40.0
Duzib084G0326 Durio zibethinus HOM05D002932 ORTHO05D003208 5.4e-29 132.1 238 43.7
Glyma.10G229200 Glycine max HOM05D002932 ORTHO05D003208 5.4e-29 132.1 240 42.9
Lj2g0001659 Lotus japonicus HOM05D002932 ORTHO05D003208 7.1e-29 131.7 242 42.6
Cfa016327 Carpinus fangiana HOM05D002932 ORTHO05D003208 9.3e-29 131.3 238 42.9
MD07G1282200 Malus domestica HOM05D002932 ORTHO05D003208 1.2e-28 131.0 246 42.3
Psat1g099360 Pisum sativum HOM05D002932 ORTHO05D003208 1.2e-28 131.0 240 41.2
Psat1g106560 Pisum sativum HOM05D002932 ORTHO05D003208 1.2e-28 131.0 233 39.5
VMungo0720G0620 Vigna mungo HOM05D002932 ORTHO05D003208 1.2e-28 131.0 239 45.2
Manes.14G020200 Manihot esculenta HOM05D002932 ORTHO05D003208 1.6e-28 130.6 241 43.6
Cpa.g.sc3.12 Carica papaya HOM05D002932 ORTHO05D003208 2.1e-28 130.2 235 45.5
Psat1g099320 Pisum sativum HOM05D002932 ORTHO05D003208 2.1e-28 130.2 223 40.8
Duzib205G0983 Durio zibethinus HOM05D002932 ORTHO05D003208 2.7e-28 129.8 237 43.5
Glyma.20G164000 Glycine max HOM05D002932 ORTHO05D003208 2.7e-28 129.8 236 44.5
Lalb_Chr03g0035141 Lupinus albus HOM05D002932 ORTHO05D003208 3.5e-28 129.4 226 42.5
RcHm_v2.0_Chr1g0379591 Rosa chinensis HOM05D002932 ORTHO05D003208 3.5e-28 129.4 246 43.1
Thecc.03G188500 Theobroma cacao HOM05D002932 ORTHO05D003208 3.5e-28 129.4 241 44.0
MD01G1211600 Malus domestica HOM05D002932 ORTHO05D003208 7.9e-28 128.3 242 41.7
FAN03G0587 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.0e-27 127.9 255 42.4
Glyma.16G173400 Glycine max HOM05D002932 ORTHO05D003208 1.0e-27 127.9 236 44.1
Medtr6g034060 Medicago truncatula HOM05D002932 ORTHO05D003208 1.3e-27 127.5 249 42.6
Phvul.004G102700 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 1.3e-27 127.5 239 45.2
Haze_00079 Corylus avellana HOM05D002932 ORTHO05D003208 2.3e-27 126.7 239 41.0
Duzib068G0647 Durio zibethinus HOM05D002932 ORTHO05D003208 2.3e-27 126.7 228 44.3
TPR.G36623 Trifolium pratense HOM05D002932 ORTHO05D003208 3.0e-27 126.3 231 41.1
Prupe.2G304400 Prunus persica HOM05D002932 ORTHO05D003208 5.1e-27 125.6 246 42.3
Sabra15G0019600 Salix brachista HOM05D002932 ORTHO05D003208 5.1e-27 125.6 233 45.1
VMungo0464G0277 Vigna mungo HOM05D002932 ORTHO05D003208 5.1e-27 125.6 238 42.9
ClCG05G008540 Citrullus lanatus HOM05D002932 ORTHO05D003208 6.7e-27 125.2 237 43.9
Gohir.A12G254433 Gossypium hirsutum HOM05D002932 ORTHO05D003208 6.7e-27 125.2 235 42.6
Manes.06G154700 Manihot esculenta HOM05D002932 ORTHO05D003208 6.7e-27 125.2 235 43.4
Psat0s694g0080 Pisum sativum HOM05D002932 ORTHO05D003208 6.7e-27 125.2 240 42.5
COL.COLO4_30256 Corchorus olitorius HOM05D002932 ORTHO05D003208 8.7e-27 124.8 241 42.7
Sed0008251 Sechium edule HOM05D002932 ORTHO05D003208 1.1e-26 124.4 233 43.8
Gohir.D12G255000 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.5e-26 124.0 240 42.5
Gorai.008G272600 Gossypium raimondii HOM05D002932 ORTHO05D003208 1.5e-26 124.0 240 42.5
MELO3C006960.2 Cucumis melo HOM05D002932 ORTHO05D003208 1.9e-26 123.6 238 44.1
CsaV3_3G021720 Cucumis sativus L. HOM05D002932 ORTHO05D003208 1.9e-26 123.6 238 44.1
Sabra15G0022400 Salix brachista HOM05D002932 ORTHO05D003208 1.9e-26 123.6 226 44.7
TWI23G0695 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 1.9e-26 123.6 231 42.0
Dinv35290 Davidia involucrata HOM05D002932 ORTHO05D003208 3.3e-26 122.9 233 40.8
Lalb_Chr01g0009541 Lupinus albus HOM05D002932 ORTHO05D003208 5.6e-26 122.1 226 40.7
Sed0015119 Sechium edule HOM05D002932 ORTHO05D003208 5.6e-26 122.1 235 44.7
GSVIVG01028788001 Vitis vinifera HOM05D003816 ORTHO05D004410 7.4e-26 121.7 234 42.7
CANSAT21G2430 Cannabis sativa HOM05D002932 ORTHO05D003208 9.6e-26 121.3 239 39.7
Medtr6g034055 Medicago truncatula HOM05D002932 ORTHO05D003208 1.3e-25 120.9 236 39.8
FAN01G1179 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.6e-25 120.6 246 43.1
FAN06G4297 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.6e-25 120.6 246 43.1
TWI14G1190 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 1.6e-25 120.6 232 42.7
TPR.G36701 Trifolium pratense HOM05D002932 ORTHO05D003208 2.8e-25 119.8 249 37.8
Lj5g0016966 Lotus japonicus HOM05D002932 ORTHO05D003208 1.1e-24 117.9 228 42.5
PGR042G1004 Punica granatum HOM05D002932 ORTHO05D003208 1.4e-24 117.5 235 41.3
CiPaw.06G005800 Carya illinoinensis HOM05D002932 ORTHO05D003208 1.8e-24 117.1 241 41.5
Actinidia03151 Actinidia chinensis HOM05D002932 ORTHO05D003208 2.4e-24 116.7 225 41.3
Eucgr.K00306 Eucalyptus grandis HOM05D002932 ORTHO05D003208 4.0e-24 115.9 237 41.4
Dinv28362 Davidia involucrata HOM05D002932 ORTHO05D003208 5.3e-24 115.5 233 40.3
CSS0021611 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 1.2e-23 114.4 224 39.7
vmacro06597 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 1.2e-23 114.4 229 39.3
Atru.chr1.321 Acer truncatum HOM05D002932 ORTHO05D003208 1.5e-23 114.0 255 38.4
Lalb_Chr21g0305311 Lupinus albus HOM05D002932 ORTHO05D003208 1.5e-23 114.0 231 43.3
Rhsim03G0196300 Rhododendron simsii HOM05D002932 ORTHO05D003208 7.6e-23 111.7 236 38.6
Ah.07g206300 Amaranthus hybridus HOM05D002932 ORTHO05D003208 3.8e-22 109.4 227 38.3
ClCG01G000790 Citrullus lanatus HOM05D002932 ORTHO05D003208 3.8e-22 109.4 230 38.3
Hma1.2p1_0142F.1_g064300 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 3.8e-22 109.4 233 41.6
Ciclev10005884m.g Citrus clementina HOM05D002932 ORTHO05D003208 6.4e-22 108.6 215 43.7
SalBow4G2867 Salvia bowleyana HOM05D002932 ORTHO05D003208 1.9e-21 107.1 229 38.4
TAR629G3108 Trochodendron aralioides HOM05D002932 ORTHO05D003208 1.9e-21 107.1 229 36.7
Actinidia08604 Actinidia chinensis HOM05D002932 ORTHO05D003208 3.2e-21 106.3 226 37.2
Sed0018025 Sechium edule HOM05D002932 ORTHO05D003208 4.2e-21 105.9 227 39.6
CsaV3_5G000930 Cucumis sativus L. HOM05D002932 ORTHO05D003208 5.5e-21 105.5 240 37.1
Lalb_Chr02g0141341 Lupinus albus HOM05D002932 ORTHO05D003208 1.6e-20 104.0 223 39.5
Nn1g01736 Nelumbo nucifera HOM05D002932 ORTHO05D003208 2.7e-20 103.2 234 38.5
Oeu009283.1 Olea europaea HOM05D002932 ORTHO05D003208 3.5e-20 102.8 232 38.4
Oeu037130.1 Olea europaea HOM05D002932 ORTHO05D003208 3.5e-20 102.8 224 39.3
Rhsim09G0202600 Rhododendron simsii HOM05D002932 ORTHO05D003208 3.5e-20 102.8 228 36.8
Solyc03g007775.2 Solanum lycopersicum HOM05D002932 ORTHO05D003208 3.5e-20 102.8 229 36.7
Migut.F00261 Erythranthe guttata HOM05D002932 ORTHO05D003208 6.0e-20 102.1 248 36.7
Gohir.A11G013400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 6.0e-20 102.1 235 36.6
Nn7g37319 Nelumbo nucifera HOM05D002932 ORTHO05D003208 1.0e-19 101.3 233 39.1
MELO3C005851.2 Cucumis melo HOM05D002932 ORTHO05D003208 1.3e-19 100.9 233 36.1
Eucgr.A02685 Eucalyptus grandis HOM05D002932 ORTHO05D003208 1.8e-19 100.5 231 40.3
AUR62021078 Chenopodium quinoa HOM05D002932 ORTHO05D003208 2.3e-19 100.1 225 37.3
EL10Ac3g05377 Beta vulgaris HOM05D002932 ORTHO05D003208 3.9e-19 99.4 232 36.2
Sopen03g003700 Solanum pennellii HOM05D002932 ORTHO05D003208 6.7e-19 98.6 230 36.1
CAN.G926.8 Capsicum annuum HOM05D002932 ORTHO05D003208 1.5e-18 97.4 253 35.6
Gohir.D11G013600 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.5e-18 97.4 235 36.6
PGSC0003DMG400019964 Solanum tuberosum HOM05D002932 ORTHO05D003208 1.5e-18 97.4 241 34.4
TAR374G1073 Trochodendron aralioides HOM05D002932 ORTHO05D003208 1.5e-18 97.4 232 37.5
AUR62031454 Chenopodium quinoa HOM05D002932 ORTHO05D003208 1.9e-18 97.1 224 37.1
Ah.13g069610 Amaranthus hybridus HOM05D002932 ORTHO05D003208 3.3e-18 96.3 229 38.0
PGR142G0585 Punica granatum HOM05D002932 ORTHO05D003208 7.4e-18 95.1 233 39.9
TAR636G0499 Trochodendron aralioides HOM05D002932 ORTHO05D003208 1.6e-17 94.0 233 35.2
ECA238G1001 Erigeron canadensis HOM05D002932 ORTHO05D003208 3.7e-17 92.8 222 35.1
HanXRQChr14g0462641 Helianthus annuus HOM05D002932 ORTHO05D003208 3.7e-17 92.8 215 34.9
Medtr6g034050 Medicago truncatula HOM05D002932 ORTHO05D003208 4.8e-17 92.4 223 37.2
CSS0045579 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 6.5e-14 82.0 169 38.5
Sc19g0001040 Simmondsia chinensis HOM05D002932 ORTHO05D003208 6.5e-14 82.0 226 35.0
HanXRQChr13g0392281 Helianthus annuus HOM05D002932 ORTHO05D003208 1.4e-13 80.9 229 35.8
HanXRQChr07g0207101 Helianthus annuus HOM05D002932 ORTHO05D003208 9.3e-13 78.2 215 31.2
Gorai.007G013900 Gossypium raimondii HOM05D002932 ORTHO05D003208 2.1e-12 77.0 195 35.9
Peaxi162Scf00904g00468 Petunia axillaris HOM05D002932 ORTHO05D003208 2.1e-12 77.0 203 34.5
Actinidia31853 Actinidia chinensis HOM05D002932 ORTHO05D003208 4.6e-12 75.9 171 37.4
Lsat_1_v5_gn_2_133581 Lactuca sativa HOM05D002932 ORTHO05D003208 4.6e-12 75.9 184 35.3
Atru.ctg97_1.61 Acer truncatum HOM05D002932 ORTHO05D003208 7.9e-12 75.1 217 35.5
Nitab4.5_0009102g0020 Nicotiana tabacum HOM05D002932 ORTHO05D003208 2.3e-11 73.6 204 35.3
CSS0001843 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 3.9e-11 72.8 98 49.0
Peaxi162Scf00618g00627 Petunia axillaris HOM05D002932 ORTHO05D003208 6.7e-11 72.0 203 35.0
Atru.chr5.594 Acer truncatum HOM05D002932 ORTHO05D003208 1.5e-10 70.9 231 29.0
CAN.G204.10 Capsicum annuum HOM05D002932 ORTHO05D003208 4.3e-10 69.3 219 33.3
Dinv43873 Davidia involucrata HOM05D002932 ORTHO05D003208 1.3e-09 67.8 257 29.2
vmacro10092 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 1.1e-08 64.7 150 35.3
PGR031G1724 Punica granatum HOM05D002932 ORTHO05D003208 1.8e-08 63.9 227 31.7
Glyma.18G121000 Glycine max HOM05D002932 ORTHO05D003208 3.1e-08 63.2 233 27.5
Ciclev10023540m.g Citrus clementina HOM05D002932 ORTHO05D003208 2.0e-07 60.5 235 30.2
Manes.01G251500 Manihot esculenta HOM05D002932 ORTHO05D003208 2.0e-07 60.5 237 28.3
Sopen10g005630 Solanum pennellii HOM05D002932 ORTHO05D003208 2.6e-07 60.1 218 30.7
Aqoxy1G02826 Aquilegia oxysepala HOM05D002932 ORTHO05D003208 4.5e-07 59.3 235 29.4
Gohir.D08G148800 Gossypium hirsutum HOM05D002932 ORTHO05D003208 5.9e-07 58.9 245 31.0
Gorai.004G154500 Gossypium raimondii HOM05D002932 ORTHO05D003208 5.9e-07 58.9 245 31.0
Potri.014G091500 Populus trichocarpa HOM05D002932 ORTHO05D003208 5.9e-07 58.9 234 29.5
PGSC0003DMG400019420 Solanum tuberosum HOM05D002932 ORTHO05D003208 5.9e-07 58.9 226 29.2
MSTRG.27064 Avicennia marina HOM05D002932 ORTHO05D003208 7.7e-07 58.5 153 35.9
Lsat_1_v5_gn_8_6240 Lactuca sativa HOM05D002932 ORTHO05D003208 1.0e-06 58.2 241 29.9
PSO384G0628 Papaver somniferum HOM05D002932 ORTHO05D003208 1.0e-06 58.2 254 27.2
Phvul.003G048900 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 1.0e-06 58.2 238 28.6
PSO135G1046 Papaver somniferum HOM05D002932 ORTHO05D003208 1.3e-06 57.8 250 26.0
Sabra14G0066400 Salix brachista HOM05D002932 ORTHO05D003208 1.3e-06 57.8 228 26.8
Glyma.02G106200 Glycine max HOM05D002932 ORTHO05D003208 2.9e-06 56.6 231 28.1
Gohir.A08G127400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 2.9e-06 56.6 240 30.8
Lalb_Chr04g0256131 Lupinus albus HOM05D002932 ORTHO05D003208 2.9e-06 56.6 230 29.1
TPR.G37115 Trifolium pratense HOM05D002932 ORTHO05D003208 2.9e-06 56.6 237 28.3
Duzib133G1077 Durio zibethinus HOM05D002932 ORTHO05D003208 3.8e-06 56.2 227 28.6
MBI07_g44813_MAGBIO Magnolia biondii HOM05D002932 ORTHO05D003208 3.8e-06 56.2 229 27.9
VMungo0251G1401 Vigna mungo HOM05D002932 ORTHO05D003208 3.8e-06 56.2 229 27.5
CSS0002659 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 5.0e-06 55.8 248 27.4
DCAR_006952 Daucus carota HOM05D002932 ORTHO05D003208 8.5e-06 55.1 244 28.3
Duzib138G0190 Durio zibethinus HOM05D002932 ORTHO05D003208 8.5e-06 55.1 241 28.6
Glyma.08G299600 Glycine max HOM05D002932 ORTHO05D003208 8.5e-06 55.1 235 26.8
PGSC0003DMG402000198 Solanum tuberosum HOM05D002932 ORTHO05D003208 8.5e-06 55.1 285 27.0


User provided reference genes

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