Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21986 Brassica carinata HOM05D008316 ORTHO05D005130 4.5e-233 811.2 510 100.0
BcaB06g28040 Brassica carinata HOM05D008316 ORTHO05D005130 6.5e-200 701.0 575 75.1
BcaB05g23532 Brassica carinata HOM05D008316 ORTHO05D005130 6.6e-120 435.3 333 74.2
BcaC06g34855 Brassica carinata HOM05D008316 ORTHO05D005130 3.2e-58 230.3 323 48.6
BcaC08g44739 Brassica carinata HOM05D008316 ORTHO05D005130 3.0e-56 223.8 441 41.7
BcaC02g09635 Brassica carinata HOM05D008316 ORTHO05D005130 2.2e-54 217.6 340 44.7
BcaC04g20935 Brassica carinata HOM05D008316 ORTHO05D005130 1.4e-53 214.9 320 51.2
BcaB05g25144 Brassica carinata HOM05D008316 ORTHO05D005130 5.4e-53 213.0 221 51.1
BcaC07g37291 Brassica carinata HOM05D008316 ORTHO05D005130 8.6e-51 205.7 326 42.0
BolC5t32273H Brassica oleracea HOM05D003554 ORTHO05D005130 2.5e-50 204.1 147 65.3
C06p00220 Brassica napus HOM05D003554 ORTHO05D005130 3.3e-50 203.8 147 65.3
BraA07t28446Z Brassica rapa HOM05D003554 ORTHO05D005130 2.8e-49 200.7 139 66.9
C08p07230 Brassica napus HOM05D008316 ORTHO05D005130 1.4e-48 198.4 132 68.9
C04p52530 Brassica napus HOM05D008316 ORTHO05D005130 3.0e-48 197.2 132 68.9
BcaB02g06748 Brassica carinata HOM05D008316 ORTHO05D005130 5.2e-48 196.4 399 37.6
C07p22550 Brassica napus HOM05D008316 ORTHO05D005130 1.2e-47 195.3 153 62.1
A07p06510 Brassica napus HOM05D003554 ORTHO05D005130 2.0e-47 194.5 139 65.5
BolC9t56608H Brassica oleracea HOM05D008316 ORTHO05D005130 9.8e-47 192.2 130 68.5
BcaC09g49342 Brassica carinata HOM05D008316 ORTHO05D005130 1.9e-42 177.9 221 46.2
BcaB07g32291 Brassica carinata HOM05D008316 ORTHO05D014956 2.8e-41 174.1 316 38.6
BraA09t38863Z Brassica rapa HOM05D008316 ORTHO05D005130 7.0e-37 159.5 103 70.9
C02p57980 Brassica napus HOM05D017905 ORTHO05D017243 5.0e-35 153.3 176 56.2
Carub.0003s3367 Capsella rubella HOM05D003554 ORTHO05D005130 1.4e-32 145.2 135 50.4
Carub.0093s0002 Capsella rubella HOM05D003554 ORTHO05D005130 1.4e-32 145.2 130 50.0
Carub.0006s2609 Capsella rubella HOM05D003554 ORTHO05D005130 1.8e-32 144.8 135 50.4
Carub.0002s0984 Capsella rubella HOM05D003554 ORTHO05D005130 4.0e-32 143.7 135 49.6
Carub.0278s0001 Capsella rubella HOM05D003554 ORTHO05D005130 5.2e-32 143.3 135 48.9
Aa31LG6G9970 Aethionema arabicum HOM05D003554 ORTHO05D005130 6.8e-32 142.9 156 44.2
Carub.0001s3566 Capsella rubella HOM05D003554 ORTHO05D005130 1.2e-31 142.1 135 49.6
Carub.0007s0014 Capsella rubella HOM05D003554 ORTHO05D005130 1.2e-31 142.1 135 49.6
BcaB08g35391 Brassica carinata HOM05D003554 ORTHO05D005130 3.4e-31 140.6 138 45.7
Carub.0002s0983 Capsella rubella HOM05D003554 ORTHO05D005130 7.5e-31 139.4 135 49.6
Carub.0002s0995 Capsella rubella HOM05D003554 ORTHO05D005130 5.4e-29 133.3 134 44.8
BNapus_Darmor_BZH_scaffold_167p00060 Brassica napus HOM05D003554 ORTHO05D005130 1.2e-28 132.1 129 48.1
Aa31LG1G6440 Aethionema arabicum HOM05D003554 ORTHO05D005130 3.5e-28 130.6 146 43.2
Aa31LG10G9040 Aethionema arabicum HOM05D003554 ORTHO05D005130 7.8e-28 129.4 179 40.2
Aa31sc111G40 Aethionema arabicum HOM05D003554 ORTHO05D005130 7.8e-28 129.4 151 43.7
Aa31LG11G8070 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.7e-27 128.3 160 41.2
Aa31sc442G10 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.7e-27 128.3 133 48.1
BcaC08g42899 Brassica carinata HOM05D003554 ORTHO05D005130 1.7e-27 128.3 138 46.4
Thhalv10024575m.g Eutrema salsugineum HOM05D006570 ORTHO05D008193 1.7e-27 128.3 158 44.9
BcaB02g10640 Brassica carinata HOM05D003554 ORTHO05D005130 5.1e-27 126.7 236 33.5
BolC5t32025H Brassica oleracea HOM05D003554 ORTHO05D005130 5.6e-26 123.2 174 42.5
BcaC07g37687 Brassica carinata HOM05D003554 ORTHO05D005130 1.2e-25 122.1 173 39.3
Carub.0007s3074 Capsella rubella HOM05D003554 ORTHO05D005130 4.7e-25 120.2 175 38.9
C02p31360 Brassica napus HOM05D009532 ORTHO05D005130 6.2e-25 119.8 252 36.1
Carub.0002s1016 Capsella rubella HOM05D003554 ORTHO05D005130 8.1e-25 119.4 121 46.3
Aa31LG7G10740 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.1e-24 119.0 127 43.3
BcaB01g01146 Brassica carinata HOM05D003554 ORTHO05D005130 1.8e-24 118.2 170 39.4
BcaB03g16118 Brassica carinata HOM05D003554 ORTHO05D005130 1.8e-24 118.2 156 40.4
Carub.0004s0685 Capsella rubella HOM05D003554 ORTHO05D005130 1.8e-24 118.2 129 43.4
Carub.0002s1014 Capsella rubella HOM05D003554 ORTHO05D005130 2.3e-24 117.9 129 43.4
Aa31sc538G20 Aethionema arabicum HOM05D003554 ORTHO05D005130 3.1e-24 117.5 172 41.9
AL1G56540 Arabidopsis lyrata HOM05D003554 ORTHO05D005130 6.8e-24 116.3 172 36.6
C05p06190 Brassica napus HOM05D003554 ORTHO05D005130 6.8e-24 116.3 112 50.9
AL1G56530 Arabidopsis lyrata HOM05D003554 ORTHO05D005130 8.9e-24 115.9 166 37.3
BcaB04g17902 Brassica carinata HOM05D003554 ORTHO05D005130 4.4e-23 113.6 131 42.7
Sp7g02635 Schrenkiella parvula HOM05D003554 ORTHO05D005130 5.8e-23 113.2 94 54.3
BcaB08g35337 Brassica carinata HOM05D003554 ORTHO05D005130 7.5e-23 112.8 155 39.4
Carub.0003s2756 Capsella rubella HOM05D003554 ORTHO05D005130 2.9e-22 110.9 131 43.5
C03p79390 Brassica napus HOM05D017905 ORTHO05D018718 3.7e-22 110.5 115 60.0
BcaB01g02862 Brassica carinata HOM05D003554 ORTHO05D005130 7.1e-21 106.3 129 41.9
C01p21650 Brassica napus HOM05D017905 ORTHO05D101057 2.7e-20 104.4 118 59.3
C03p67190 Brassica napus HOM05D003554 ORTHO05D005130 2.7e-20 104.4 78 62.8
C08p06800 Brassica napus HOM05D003554 ORTHO05D005130 2.7e-20 104.4 89 52.8
BcaB07g31822 Brassica carinata HOM05D003554 ORTHO05D032345 3.5e-20 104.0 171 36.8
BcaB06g26180 Brassica carinata HOM05D009532 ORTHO05D005130 1.3e-19 102.1 73 65.8
AT2G06420 Arabidopsis thaliana HOM05D003554 ORTHO05D005130 3.0e-19 100.9 125 40.8
Thhalv10009333m.g Eutrema salsugineum HOM05D003554 ORTHO05D005130 1.1e-18 99.0 128 39.8
Thhalv10009683m.g Eutrema salsugineum HOM05D003554 ORTHO05D005130 5.6e-18 96.7 128 39.1
Thhalv10009514m.g Eutrema salsugineum HOM05D003554 ORTHO05D005130 1.2e-17 95.5 131 39.7
Thhalv10009650m.g Eutrema salsugineum HOM05D003554 ORTHO05D005130 1.2e-17 95.5 131 40.5
CARHR213120 Cardamine hirsuta HOM05D003554 ORTHO05D005130 1.6e-17 95.1 89 51.7
THA.LOC104822529 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.1e-17 94.7 123 40.7
THA.LOC104808464 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 3.6e-17 94.0 201 32.3
Thhalv10009941m.g Eutrema salsugineum HOM05D003554 ORTHO05D005130 4.7e-17 93.6 130 40.0
THA.LOC104804655 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 6.2e-17 93.2 122 38.5
THA.LOC104804766 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 3.1e-16 90.9 123 39.8
THA.LOC109116427 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 4.0e-16 90.5 189 32.8
Aa31LG5G24000 Aethionema arabicum HOM05D003554 ORTHO05D005130 5.2e-16 90.1 64 62.5
Thhalv10009627m.g Eutrema salsugineum HOM05D003554 ORTHO05D005130 5.2e-16 90.1 131 38.2
Thhalv10009620m.g Eutrema salsugineum HOM05D003554 ORTHO05D005130 6.8e-16 89.7 116 39.7
BolC4t23182H Brassica oleracea HOM05D003554 ORTHO05D005130 8.9e-16 89.4 70 58.6
THA.LOC104810514 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 8.9e-16 89.4 126 35.7
Thhalv10009369m.g Eutrema salsugineum HOM05D003554 ORTHO05D005130 1.2e-15 89.0 128 37.5
Thhalv10009711m.g Eutrema salsugineum HOM05D003554 ORTHO05D005130 1.2e-15 89.0 102 43.1
THA.LOC104810611 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.0e-15 88.2 122 38.5
THA.LOC104810569 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 3.4e-15 87.4 123 35.8
THA.LOC104815123 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 3.4e-15 87.4 123 37.4
THA.LOC104813280 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 4.4e-15 87.0 123 35.8
THA.LOC104798651 Tarenaya hassleriana HOM05D003554 ORTHO05D015748 1.3e-14 85.5 122 37.7
BolC3t19531H Brassica oleracea HOM05D003554 ORTHO05D005130 1.7e-14 85.1 86 45.3
THA.LOC104809667 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.7e-14 85.1 122 37.7
THA.LOC104825259 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.7e-14 85.1 155 34.2
Aa31LG6G9990 Aethionema arabicum HOM05D003554 ORTHO05D005130 2.2e-14 84.7 162 33.3
THA.LOC104816074 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.2e-14 84.7 123 35.0
THA.LOC104820187 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.2e-14 84.7 123 35.0
THA.LOC104823081 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.2e-14 84.7 122 37.7
BcaB01g04319 Brassica carinata HOM05D008316 ORTHO05D005130 3.8e-14 84.0 126 40.5
CARHR034150 Cardamine hirsuta HOM05D003554 ORTHO05D005130 4.9e-14 83.6 79 46.8
Aa31LG6G10050 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.1e-13 82.4 66 57.6
THA.LOC104798650 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.1e-13 82.4 122 36.9
THA.LOC109117170 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.4e-13 82.0 110 40.0
THA.LOC104811332 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.9e-13 81.6 117 37.6
THA.LOC104811336 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.4e-13 81.3 154 32.5
THA.LOC104825824 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.4e-13 81.3 117 37.6
THA.LOC104807874 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 3.2e-13 80.9 142 33.1
THA.LOC109116278 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 3.2e-13 80.9 117 37.6
BcaC05g27442 Brassica carinata HOM05D003554 ORTHO05D005130 5.4e-13 80.1 108 41.7
CARHR113350 Cardamine hirsuta HOM05D003554 ORTHO05D005130 7.1e-13 79.7 66 54.5
THA.LOC104803192 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.2e-12 79.0 154 32.5
THA.LOC104807807 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.2e-12 79.0 154 32.5
THA.LOC109116390 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.6e-12 78.6 151 30.5
Aa31sc471G30 Aethionema arabicum HOM05D003554 ORTHO05D005130 7.8e-12 76.3 60 56.7
THA.LOC104803467 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.0e-11 75.9 124 33.9
THA.LOC104803478 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.3e-11 74.7 85 43.5
THA.LOC104821602 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 3.0e-11 74.3 147 31.3
THA.LOC109116563 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 3.9e-11 73.9 159 29.6
CARHR049310 Cardamine hirsuta HOM05D003554 ORTHO05D005130 6.6e-11 73.2 64 50.0
BcaC05g27750 Brassica carinata HOM05D008825 ORTHO05D013031 1.1e-10 72.4 351 27.4
BraA03t15707Z Brassica rapa HOM05D003554 ORTHO05D005130 1.8e-08 65.1 127 36.2
BcaB04g17553 Brassica carinata HOM05D008316 ORTHO05D014956 5.3e-08 63.5 180 32.2
Thhalv10010916m.g Eutrema salsugineum HOM05D000675 ORTHO05D000395 1.5e-07 62.0 82 43.9
THA.LOC104827496 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.0e-07 61.6 69 42.0
CANSAT80G0406 Cannabis sativa HOM05D003554 ORTHO05D005130 4.4e-07 60.5 64 40.6
Thhalv10016067m.g Eutrema salsugineum HOM05D000675 ORTHO05D000395 1.3e-06 58.9 84 42.9
Thhalv10002344m.g Eutrema salsugineum HOM05D000675 ORTHO05D000395 1.7e-06 58.5 84 41.7
Thhalv10001852m.g Eutrema salsugineum HOM05D000675 ORTHO05D000395 2.2e-06 58.2 84 41.7
Thhalv10017554m.g Eutrema salsugineum HOM05D000675 ORTHO05D000395 2.2e-06 58.2 82 41.5
THA.LOC104807864 Tarenaya hassleriana HOM05D003554 ORTHO05D015748 2.2e-06 58.2 49 49.0
THA.LOC104821166 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.2e-06 58.2 49 49.0
BcaB05g24479 Brassica carinata HOM05D008316 ORTHO05D017243 2.9e-06 57.8 468 25.9
BcaC08g42812 Brassica carinata HOM05D008825 ORTHO05D013031 2.9e-06 57.8 247 28.7
BraA05t19810Z Brassica rapa HOM05D001038 ORTHO05D016703 2.9e-06 57.8 95 35.8
Thhalv10015767m.g Eutrema salsugineum HOM05D000675 ORTHO05D000395 2.9e-06 57.8 84 40.5
THA.LOC104825207 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.9e-06 57.8 59 42.4
Thhalv10000427m.g Eutrema salsugineum HOM05D000675 ORTHO05D000395 3.8e-06 57.4 84 41.7
Thhalv10002246m.g Eutrema salsugineum HOM05D000675 ORTHO05D000395 3.8e-06 57.4 84 41.7
Thhalv10002818m.g Eutrema salsugineum HOM05D000675 ORTHO05D000395 3.8e-06 57.4 84 41.7
Thhalv10003323m.g Eutrema salsugineum HOM05D000675 ORTHO05D000395 3.8e-06 57.4 84 41.7
Thhalv10010988m.g Eutrema salsugineum HOM05D000675 ORTHO05D000395 3.8e-06 57.4 84 41.7
Thhalv10029179m.g Eutrema salsugineum HOM05D000675 ORTHO05D000395 3.8e-06 57.4 84 41.7
Thhalv10000600m.g Eutrema salsugineum HOM05D000675 ORTHO05D000395 4.9e-06 57.0 83 42.2
Thhalv10023196m.g Eutrema salsugineum HOM05D000675 ORTHO05D000395 4.9e-06 57.0 84 40.5
Thhalv10027124m.g Eutrema salsugineum HOM05D000675 ORTHO05D000395 4.9e-06 57.0 84 42.9
THA.LOC104822875 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 6.4e-06 56.6 58 44.8
BcaB07g32749 Brassica carinata HOM05D008316 ORTHO05D013031 8.4e-06 56.2 349 26.9
Thhalv10003381m.g Eutrema salsugineum HOM05D000675 ORTHO05D000395 8.4e-06 56.2 83 41.0
Thhalv10005454m.g Eutrema salsugineum HOM05D000675 ORTHO05D000395 8.4e-06 56.2 84 41.7
Thhalv10024161m.g Eutrema salsugineum HOM05D000675 ORTHO05D000395 8.4e-06 56.2 84 39.3
Thhalv10027299m.g Eutrema salsugineum HOM05D000675 ORTHO05D000395 8.4e-06 56.2 84 40.5
Thhalv10029459m.g Eutrema salsugineum HOM05D000675 ORTHO05D000395 8.4e-06 56.2 84 41.7


User provided reference genes

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