Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 7.3e-92 340.5 167 100.0
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 2.4e-87 325.5 172 93.6
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 2.7e-86 322.0 171 93.0
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 2.7e-86 322.0 171 93.0
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 6.0e-86 320.9 171 92.4
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 6.0e-86 320.9 171 92.4
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 6.0e-86 320.9 170 92.9
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 7.8e-86 320.5 170 92.4
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 7.8e-86 320.5 170 92.4
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 1.3e-85 319.7 171 92.4
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.3e-85 318.9 170 91.8
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 3.0e-85 318.5 170 92.4
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 3.0e-85 318.5 170 91.8
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 6.6e-85 317.4 170 91.8
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 1.9e-84 315.8 170 90.6
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 3.3e-84 315.1 170 91.2
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 4.3e-84 314.7 170 90.0
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 1.6e-83 312.8 171 88.9
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 2.8e-83 312.0 170 90.0
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 3.6e-83 311.6 170 90.6
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.0e-81 305.8 170 87.1
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 9.9e-81 303.5 170 89.4
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 9.9e-81 303.5 170 89.4
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 2.9e-80 302.0 170 87.1
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 6.4e-80 300.8 170 85.9
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.7e-77 292.7 167 84.4
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 3.0e-77 292.0 167 83.2
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 3.3e-76 288.5 160 87.5
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.6e-76 287.7 167 81.4
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 9.6e-76 287.0 170 82.4
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 1.2e-75 286.6 167 80.2
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.2e-75 286.6 162 85.2
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 1.6e-75 286.2 167 80.8
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 2.1e-75 285.8 168 81.5
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 2.1e-75 285.8 162 85.2
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.1e-75 285.8 162 85.2
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.1e-75 285.8 162 85.2
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 2.1e-75 285.8 171 80.1
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.8e-75 285.4 162 84.6
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.8e-75 285.4 162 84.6
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 2.8e-75 285.4 171 80.7
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 4.7e-75 284.6 157 86.0
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.1e-75 283.9 162 84.6
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.1e-74 283.5 165 80.6
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.1e-74 283.5 162 84.6
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.1e-74 283.5 169 81.7
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 1.4e-74 283.1 161 83.2
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 1.4e-74 283.1 161 83.9
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 1.4e-74 283.1 167 80.8
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 2.4e-74 282.3 167 79.6
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 2.4e-74 282.3 152 87.5
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 4.0e-74 281.6 160 85.0
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 6.9e-74 280.8 170 80.6
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 6.9e-74 280.8 167 79.0
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 6.9e-74 280.8 167 79.0
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 6.9e-74 280.8 168 81.0
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 1.5e-73 279.6 170 78.8
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 2.0e-73 279.3 161 82.6
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 3.4e-73 278.5 166 77.7
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 4.4e-73 278.1 167 82.0
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 9.9e-73 276.9 167 78.4
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 2.9e-72 275.4 169 78.7
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 8.4e-72 273.9 158 82.3
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 8.4e-72 273.9 158 82.3
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 8.4e-72 273.9 167 80.2
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 3.2e-71 271.9 151 85.4
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 5.4e-71 271.2 170 78.8
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 7.1e-71 270.8 167 76.6
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 1.2e-70 270.0 155 81.9
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 1.2e-70 270.0 167 77.2
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 3.5e-70 268.5 170 77.6
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 4.6e-70 268.1 151 82.8
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 7.8e-70 267.3 175 74.9
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.3e-69 266.5 153 80.4
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 1.3e-69 266.5 160 80.0
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 3.9e-69 265.0 151 81.5
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 1.5e-68 263.1 168 77.4
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 1.9e-68 262.7 155 79.4
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 2.5e-68 262.3 170 75.3
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 3.3e-68 261.9 168 76.2
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 4.3e-68 261.5 149 83.2
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 5.6e-68 261.2 172 73.3
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 5.6e-68 261.2 151 80.8
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 5.6e-68 261.2 159 78.0
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 5.6e-68 261.2 166 75.3
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 5.6e-68 261.2 162 78.4
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 5.6e-68 261.2 173 74.6
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 7.3e-68 260.8 148 83.1
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 7.3e-68 260.8 169 74.6
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 9.6e-68 260.4 152 79.6
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 9.6e-68 260.4 160 78.8
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 1.6e-67 259.6 159 79.2
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.8e-67 258.8 161 75.8
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 2.8e-67 258.8 159 79.2
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 2.8e-67 258.8 149 80.5
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 3.6e-67 258.5 151 80.1
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 3.6e-67 258.5 149 82.6
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 4.8e-67 258.1 162 77.2
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 6.2e-67 257.7 170 77.1
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 6.2e-67 257.7 163 76.1
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 6.2e-67 257.7 159 78.0
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 6.2e-67 257.7 165 75.8
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 6.2e-67 257.7 169 74.0
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 8.1e-67 257.3 151 79.5
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 8.1e-67 257.3 165 77.0
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 8.1e-67 257.3 151 80.8
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 1.1e-66 256.9 154 77.9
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.1e-66 256.9 165 77.6
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 3.1e-66 255.4 161 75.8
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 4.0e-66 255.0 151 80.1
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 6.9e-66 254.2 151 81.5
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 6.9e-66 254.2 165 72.1
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 6.9e-66 254.2 162 75.9
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 9.0e-66 253.8 165 77.6
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 9.0e-66 253.8 165 77.6
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 1.5e-65 253.1 151 78.8
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 2.0e-65 252.7 151 77.5
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.6e-65 252.3 153 79.7
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 3.4e-65 251.9 165 76.4
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 4.5e-65 251.5 151 78.1
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 7.6e-65 250.8 149 80.5
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 1.7e-64 249.6 165 71.5
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.2e-64 249.2 153 75.2
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 2.9e-64 248.8 155 76.8
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 2.9e-64 248.8 155 76.8
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 8.4e-64 247.3 152 77.0
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 1.4e-63 246.5 153 77.8
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 1.9e-63 246.1 151 76.8
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 3.2e-63 245.4 151 75.5
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 5.4e-63 244.6 157 74.5
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 5.4e-63 244.6 153 77.1
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 1.2e-62 243.4 153 76.5
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 2.1e-62 242.7 149 79.2
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.3e-61 240.0 155 72.9
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 4.3e-60 235.0 207 58.5
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 1.6e-59 233.0 146 74.0
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 1.6e-59 233.0 152 72.4
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 2.8e-59 232.3 152 71.7
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 9.9e-57 223.8 120 84.2
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 6.4e-56 221.1 136 77.2
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 9.3e-55 217.2 152 68.4
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 5.1e-53 211.5 129 78.3
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 1.3e-51 206.8 164 59.8
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 4.0e-50 201.8 130 73.8
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 3.8e-48 195.3 112 80.4
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 7.9e-46 187.6 170 62.9
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 2.4e-42 176.0 134 64.2
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 3.4e-41 172.2 133 59.4
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 8.5e-40 167.5 134 59.0
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 1.1e-39 167.2 134 60.4
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.9e-39 166.4 166 54.2
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 9.3e-39 164.1 127 60.6
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 1.6e-38 163.3 108 77.8
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 4.6e-38 161.8 88 92.0
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 4.5e-33 145.2 86 86.0
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 5.9e-33 144.8 91 75.8
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 1.0e-29 134.0 170 49.4
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 2.3e-29 132.9 68 91.2
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 3.0e-29 132.5 120 51.7
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 6.3e-27 124.8 105 65.7
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 2.6e-25 119.4 98 64.3
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 3.4e-25 119.0 99 59.6
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.9e-23 113.2 118 43.2
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.2e-23 112.5 123 43.9
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 2.7e-22 109.4 71 74.6
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.7e-22 108.6 122 41.8
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.7e-22 108.6 122 41.8
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 6.1e-22 108.2 55 83.6
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 7.4e-20 101.3 62 67.7
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 3.2e-15 85.9 67 59.7
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 3.2e-15 85.9 55 74.5
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 2.7e-14 82.8 95 41.1
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 4.7e-14 82.0 96 40.6
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 4.7e-14 82.0 96 40.6
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 1.7e-11 73.6 42 66.7
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 1.4e-10 70.5 92 43.5


User provided reference genes

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