Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 1.5e-200 702.6 348 100.0
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 2.5e-155 552.4 359 82.7
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 1.1e-153 547.0 354 81.4
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 6.1e-149 531.2 344 81.4
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 7.9e-149 530.8 356 80.9
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 3.0e-148 528.9 358 78.5
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 3.0e-148 528.9 344 81.1
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 5.7e-147 524.6 354 78.8
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 4.8e-146 521.5 354 78.2
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 8.2e-146 520.8 348 80.5
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 1.5e-144 516.5 356 77.8
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 5.9e-144 514.6 338 81.1
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 5.0e-135 485.0 352 73.9
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 2.3e-132 476.1 345 75.4
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 7.5e-115 417.9 347 68.6
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.5e-91 340.5 389 52.4
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 1.1e-89 334.3 401 51.6
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 3.2e-89 332.8 394 52.8
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 1.6e-88 330.5 398 51.5
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 3.5e-88 329.3 390 52.6
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 6.0e-88 328.6 363 53.4
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 1.0e-87 327.8 378 52.9
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 3.0e-87 326.2 389 50.6
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 3.9e-87 325.9 395 51.9
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 3.9e-87 325.9 356 52.8
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 6.6e-87 325.1 376 52.4
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 8.6e-87 324.7 376 52.4
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 8.6e-87 324.7 373 52.0
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 1.1e-86 324.3 400 51.0
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 1.9e-86 323.6 364 54.1
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 9.5e-86 321.2 390 51.3
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 9.5e-86 321.2 393 50.9
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 2.1e-85 320.1 381 53.3
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 3.6e-85 319.3 398 50.8
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 3.6e-85 319.3 386 51.6
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 3.6e-85 319.3 383 51.2
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 2.3e-84 316.6 389 51.4
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 3.1e-84 316.2 381 52.2
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 8.9e-84 314.7 348 55.5
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 1.2e-83 314.3 393 49.9
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 7.6e-83 311.6 390 51.8
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 9.9e-83 311.2 403 50.4
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 9.9e-83 311.2 403 50.4
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 9.9e-83 311.2 403 50.4
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 9.9e-83 311.2 403 50.4
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 4.9e-82 308.9 391 47.3
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 1.4e-81 307.4 404 51.0
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.9e-81 307.0 390 50.3
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.2e-81 306.2 403 49.4
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 4.1e-81 305.8 393 47.8
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 4.1e-81 305.8 391 50.4
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 7.1e-81 305.1 396 50.3
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 7.1e-81 305.1 378 51.1
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 1.0e-79 301.2 382 50.5
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 1.7e-79 300.4 385 49.4
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 2.3e-79 300.1 378 50.0
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 3.9e-79 299.3 403 47.1
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 6.6e-79 298.5 392 48.5
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 6.6e-79 298.5 392 49.0
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 5.6e-78 295.4 386 49.2
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 5.6e-78 295.4 378 49.2
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 9.6e-78 294.7 394 48.0
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 1.2e-77 294.3 354 50.6
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 2.1e-77 293.5 404 47.3
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 2.8e-77 293.1 381 48.8
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 6.2e-77 292.0 382 49.2
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 6.2e-77 292.0 384 49.5
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 8.1e-77 291.6 390 48.5
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 1.4e-76 290.8 393 47.6
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 1.8e-76 290.4 391 48.3
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 3.1e-76 289.7 390 48.5
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 6.8e-76 288.5 378 48.7
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 6.8e-76 288.5 402 45.8
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 1.5e-75 287.3 389 49.1
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 2.0e-75 287.0 414 45.2
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 4.4e-75 285.8 386 48.4
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 2.2e-74 283.5 361 49.0
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 2.2e-74 283.5 378 48.1
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 2.9e-74 283.1 385 47.5
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 4.9e-74 282.3 394 46.2
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 8.4e-74 281.6 393 47.1
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.4e-73 280.8 357 49.9
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 1.9e-73 280.4 400 46.5
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 7.1e-73 278.5 370 48.1
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 9.3e-73 278.1 386 47.4
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 2.7e-72 276.6 394 45.2
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.7e-72 276.6 390 47.4
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 1.7e-71 273.9 376 47.6
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 8.7e-71 271.6 290 54.1
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 4.3e-70 269.2 350 48.3
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 4.3e-70 269.2 390 45.4
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 2.1e-69 266.9 374 45.7
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 1.1e-68 264.6 397 46.1
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 1.8e-68 263.8 403 44.9
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 6.9e-68 261.9 350 48.0
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 6.9e-68 261.9 368 47.8
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 1.5e-67 260.8 357 46.2
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 2.0e-67 260.4 367 46.3
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 6.4e-66 255.4 299 50.2
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 3.2e-65 253.1 257 52.9
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 2.1e-64 250.4 294 52.7
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 2.7e-64 250.0 352 48.9
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 1.7e-63 247.3 386 43.8
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 5.6e-62 242.3 386 41.5
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 5.6e-62 242.3 389 43.7
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 5.6e-62 242.3 474 40.1
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 2.1e-61 240.4 404 41.6
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 4.8e-61 239.2 349 44.1
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 1.2e-59 234.6 274 50.7
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 7.6e-59 231.9 392 43.1
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 1.4e-57 227.6 355 44.5
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 2.3e-55 220.3 301 47.8
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 4.3e-54 216.1 340 43.2
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 6.9e-52 208.8 235 50.6
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 2.2e-50 203.8 375 43.2
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 5.1e-47 192.6 355 40.3
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 8.5e-42 175.3 269 42.0
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 3.9e-39 166.4 109 73.4
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 5.7e-38 162.5 311 38.6
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 6.3e-37 159.1 305 41.0
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 7.7e-35 152.1 242 38.0
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 8.5e-34 148.7 185 41.6
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 9.4e-33 145.2 310 33.9
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.1e-30 138.3 158 42.4
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 5.7e-30 136.0 266 40.6
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 7.7e-27 125.6 93 64.5
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.9e-25 120.9 123 53.7
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 3.2e-25 120.2 106 50.0
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 1.0e-23 115.2 278 37.4
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 8.8e-23 112.1 263 37.6
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 1.1e-20 105.1 267 37.1
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 3.8e-18 96.7 273 33.7
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 6.5e-18 95.9 68 67.6
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 3.2e-17 93.6 276 33.3
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 2.0e-14 84.3 235 34.9
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 7.0e-12 75.9 73 53.4
RcHm_v2.0_Chr3g0492291 Rosa chinensis HOM05D005357 ORTHO05D006354 3.6e-08 63.5 49 69.4


User provided reference genes

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