Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 1.8e-48 195.7 102 100.0
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 4.4e-31 137.9 79 93.7
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 4.4e-31 137.9 79 93.7
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 1.7e-30 136.0 78 93.6
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 2.2e-30 135.6 79 92.4
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 2.8e-30 135.2 80 93.8
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 5.9e-28 127.5 79 88.6
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 1.3e-22 109.8 82 78.0
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 4.9e-22 107.8 80 76.2
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 1.4e-21 106.3 85 71.8
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.8e-21 105.9 78 74.4
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 1.6e-17 92.8 78 69.2
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 2.1e-17 92.4 80 66.2
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 4.7e-17 91.3 97 58.8
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 8.9e-16 87.0 79 64.6
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.5e-15 86.3 78 65.4
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 1.1e-13 80.1 79 63.3
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 1.4e-13 79.7 78 65.4
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 1.8e-13 79.3 79 63.3
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 3.2e-13 78.6 80 65.0
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 3.2e-13 78.6 79 64.6
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 3.2e-13 78.6 79 63.3
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 7.0e-13 77.4 79 64.6
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 7.0e-13 77.4 80 63.8
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 9.2e-13 77.0 79 63.3
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 9.2e-13 77.0 79 64.6
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 1.6e-12 76.3 79 63.3
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 2.0e-12 75.9 80 61.2
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 2.0e-12 75.9 79 58.2
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 2.7e-12 75.5 78 60.3
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 3.5e-12 75.1 80 62.5
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 3.5e-12 75.1 68 66.2
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 3.5e-12 75.1 80 63.8
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 4.6e-12 74.7 79 63.3
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 4.6e-12 74.7 79 63.3
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 7.8e-12 73.9 80 62.5
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 7.8e-12 73.9 78 61.5
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 7.8e-12 73.9 80 62.5
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 1.0e-11 73.6 79 62.0
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 1.0e-11 73.6 79 60.8
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.0e-11 73.6 79 60.8
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 1.0e-11 73.6 80 58.8
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 1.0e-11 73.6 80 58.8
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 1.0e-11 73.6 80 60.0
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.3e-11 73.2 80 61.2
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 1.3e-11 73.2 53 79.2
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 1.3e-11 73.2 69 66.7
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 1.3e-11 73.2 79 57.0
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.3e-11 73.2 78 61.5
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.7e-11 72.8 78 59.0
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.7e-11 72.8 78 59.0
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 1.7e-11 72.8 87 54.0
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 2.3e-11 72.4 79 59.5
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 3.0e-11 72.0 78 61.5
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 3.0e-11 72.0 80 60.0
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 3.0e-11 72.0 84 59.5
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 3.9e-11 71.6 48 79.2
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 3.9e-11 71.6 79 59.5
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 3.9e-11 71.6 70 64.3
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 3.9e-11 71.6 79 60.8
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 3.9e-11 71.6 79 59.5
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 3.9e-11 71.6 80 56.2
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 8.6e-11 70.5 78 60.3
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 1.1e-10 70.1 71 60.6
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 1.5e-10 69.7 78 62.8
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 1.5e-10 69.7 79 60.8
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.5e-10 69.7 68 63.2
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 1.9e-10 69.3 42 85.7
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 1.9e-10 69.3 83 54.2
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.9e-10 69.3 78 56.4
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 2.5e-10 68.9 79 55.7
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 2.5e-10 68.9 52 71.2
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 2.5e-10 68.9 78 51.3
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 3.3e-10 68.6 80 55.0
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 4.3e-10 68.2 52 71.2
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 4.3e-10 68.2 80 57.5
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 5.6e-10 67.8 80 53.8
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 7.3e-10 67.4 83 56.6
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 7.3e-10 67.4 48 75.0
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 7.3e-10 67.4 80 56.2
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 7.3e-10 67.4 46 73.9
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 9.5e-10 67.0 48 75.0
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 1.2e-09 66.6 91 48.4
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 1.2e-09 66.6 91 48.4
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.2e-09 66.6 91 48.4
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 1.6e-09 66.2 79 57.0
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 2.1e-09 65.9 67 61.2
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 2.1e-09 65.9 80 53.8
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 2.1e-09 65.9 43 79.1
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 2.8e-09 65.5 78 53.8
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 2.8e-09 65.5 80 51.2
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 4.7e-09 64.7 78 52.6
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 4.7e-09 64.7 43 76.7
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 4.7e-09 64.7 82 51.2
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 6.2e-09 64.3 86 51.2
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 6.2e-09 64.3 51 68.6
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 6.2e-09 64.3 73 56.2
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 6.2e-09 64.3 79 50.6
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 8.0e-09 63.9 81 53.1
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 8.0e-09 63.9 78 52.6
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 8.0e-09 63.9 67 58.2
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 1.4e-08 63.2 80 48.8
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 1.4e-08 63.2 80 48.8
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 1.4e-08 63.2 86 48.8
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 1.8e-08 62.8 47 70.2
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 1.8e-08 62.8 79 51.9
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 2.3e-08 62.4 82 51.2
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.3e-08 62.4 82 50.0
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 2.3e-08 62.4 69 55.1
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 2.3e-08 62.4 47 70.2
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 2.3e-08 62.4 75 52.0
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 2.3e-08 62.4 75 52.0
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 4.0e-08 61.6 77 53.2
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 4.0e-08 61.6 60 56.7
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 5.2e-08 61.2 71 56.3
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 6.8e-08 60.8 81 48.1
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 8.9e-08 60.5 46 69.6
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 1.2e-07 60.1 73 54.8
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 1.5e-07 59.7 86 48.8
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 1.5e-07 59.7 56 66.1
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 2.0e-07 59.3 46 63.0
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 2.0e-07 59.3 79 50.6
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 2.6e-07 58.9 80 50.0
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.6e-07 58.9 82 47.6
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 5.8e-07 57.8 67 53.7
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 7.5e-07 57.4 51 60.8
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 2.2e-06 55.8 38 78.9
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 3.7e-06 55.1 66 51.5
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 4.9e-06 54.7 47 61.7
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 4.9e-06 54.7 45 66.7
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 4.9e-06 54.7 71 52.1
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 6.4e-06 54.3 70 48.6


User provided reference genes

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