Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 3.1e-37 157.9 77 100.0
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 2.1e-33 145.2 77 93.5
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 2.1e-33 145.2 77 93.5
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 6.0e-33 143.7 77 93.5
BolC2t06031H Brassica oleracea HOM05D004288 ORTHO05D004997 1.0e-32 142.9 77 92.2
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 3.2e-26 121.3 79 81.0
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 1.8e-24 115.5 72 80.6
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 5.3e-21 104.0 80 70.0
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 3.4e-20 101.3 82 70.7
C09p74500 Brassica napus HOM05D004288 ORTHO05D004997 6.5e-19 97.1 74 66.2
BcaNung02758 Brassica carinata HOM05D004288 ORTHO05D004997 3.2e-18 94.7 62 72.6
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 9.3e-18 93.2 80 63.8
BolC9t60183H Brassica oleracea HOM05D004288 ORTHO05D004997 9.3e-18 93.2 65 70.8
BcaNung04465 Brassica carinata HOM05D004288 ORTHO05D004997 5.1e-16 87.4 64 71.9
BcaNung06280 Brassica carinata HOM05D004288 ORTHO05D004997 8.7e-16 86.7 72 68.1
A10p33580 Brassica napus HOM05D004288 ORTHO05D004997 1.5e-15 85.9 75 60.0
BraA10t45389Z Brassica rapa HOM05D004288 ORTHO05D004997 1.5e-15 85.9 75 60.0
CARHR211400 Cardamine hirsuta HOM05D004288 ORTHO05D004997 1.3e-11 72.8 85 56.5
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 2.7e-09 65.1 49 71.4
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 6.1e-09 63.9 53 62.3
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 7.9e-09 63.5 52 63.5
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 1.8e-08 62.4 56 57.1
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 3.9e-08 61.2 46 67.4
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 3.9e-08 61.2 46 67.4
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 5.1e-08 60.8 46 65.2
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 6.7e-08 60.5 51 60.8
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 6.7e-08 60.5 51 58.8
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 8.8e-08 60.1 48 62.5
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 8.8e-08 60.1 51 56.9
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 8.8e-08 60.1 45 57.8
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.5e-07 59.3 46 63.0
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.5e-07 59.3 46 63.0
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.5e-07 59.3 46 63.0
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 2.0e-07 58.9 50 62.0
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 2.0e-07 58.9 51 60.8
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 2.0e-07 58.9 49 59.2
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 2.6e-07 58.5 60 55.0
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 3.3e-07 58.2 53 56.6
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 4.4e-07 57.8 50 58.0
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 4.4e-07 57.8 49 61.2
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 4.4e-07 57.8 58 56.9
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 4.4e-07 57.8 51 58.8
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 4.4e-07 57.8 49 61.2
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 4.4e-07 57.8 51 58.8
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 5.7e-07 57.4 50 56.0
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 5.7e-07 57.4 45 60.0
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 5.7e-07 57.4 51 56.9
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 5.7e-07 57.4 50 60.0
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 5.7e-07 57.4 51 58.8
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 7.4e-07 57.0 51 58.8
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 7.4e-07 57.0 54 53.7
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.3e-06 56.2 86 43.0
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.3e-06 56.2 67 46.3
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 1.7e-06 55.8 53 58.5
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 1.7e-06 55.8 55 56.4
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.7e-06 55.8 55 56.4
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.7e-06 55.8 52 53.8
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 1.7e-06 55.8 52 53.8
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 1.7e-06 55.8 50 58.0
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.2e-06 55.5 49 59.2
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 2.2e-06 55.5 49 59.2
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.2e-06 55.5 45 64.4
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 2.8e-06 55.1 49 61.2
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 2.8e-06 55.1 51 51.0
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 2.8e-06 55.1 48 62.5
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 3.7e-06 54.7 51 56.9
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 4.8e-06 54.3 54 53.7
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 4.8e-06 54.3 80 40.0
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 4.8e-06 54.3 49 57.1
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 4.8e-06 54.3 48 60.4
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 4.8e-06 54.3 48 60.4
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 4.8e-06 54.3 48 60.4
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 4.8e-06 54.3 47 59.6
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 6.3e-06 53.9 50 58.0
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 6.3e-06 53.9 42 59.5
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 6.3e-06 53.9 56 50.0
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 6.3e-06 53.9 56 50.0
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 6.3e-06 53.9 52 51.9
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 8.2e-06 53.5 52 55.8
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 8.2e-06 53.5 56 51.8
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 8.2e-06 53.5 56 51.8


User provided reference genes

Program Settings