Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21888 Brassica carinata HOM05D003174 ORTHO05D003439 4.5e-308 1060.4 544 100.0
Sp6g39990 Schrenkiella parvula HOM05D003174 ORTHO05D003439 9.8e-154 547.7 614 58.1
Thhalv10015290m.g Eutrema salsugineum HOM05D003174 ORTHO05D003439 1.6e-143 513.8 619 55.9
BolC2t06049H Brassica oleracea HOM05D003174 ORTHO05D003439 4.0e-139 499.2 551 58.8
BraA02t04720Z Brassica rapa HOM05D003174 ORTHO05D003439 1.5e-133 480.7 560 58.6
BcaC03g13058 Brassica carinata HOM05D003174 ORTHO05D003439 1.2e-132 477.6 507 62.3
C02p00500 Brassica napus HOM05D003174 ORTHO05D003439 3.6e-132 476.1 530 58.5
AT5G02520 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 1.4e-131 474.2 615 53.5
Carub.0006s0132 Capsella rubella HOM05D003174 ORTHO05D003439 9.3e-104 381.7 722 42.1
AL6G11780 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 1.3e-92 344.7 597 44.6
Aa31LG1G22280 Aethionema arabicum HOM05D003174 ORTHO05D003439 2.6e-82 310.5 529 43.5
CARHR210840 Cardamine hirsuta HOM05D003174 ORTHO05D003439 2.1e-79 300.8 565 41.4
THA.LOC104816287 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 2.3e-54 217.6 542 34.9
CSS0007124 Camellia sinensis var. sinensis HOM05D003174 ORTHO05D003439 1.1e-35 155.6 588 28.2
GSVIVG01034205001 Vitis vinifera HOM05D003174 ORTHO05D003439 1.2e-34 152.1 526 27.6
Lj1g0011268 Lotus japonicus HOM05D003174 ORTHO05D003439 6.8e-30 136.3 547 28.0
MSTRG.924 Avicennia marina HOM05D003174 ORTHO05D003439 7.5e-29 132.9 541 25.9
Phvul.007G157300 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 1.3e-28 132.1 521 26.3
Thecc.05G042400 Theobroma cacao HOM05D003174 ORTHO05D003439 1.7e-28 131.7 504 25.6
Prupe.6G252000 Prunus persica HOM05D003174 ORTHO05D003439 3.7e-28 130.6 545 27.9
Duzib106G0893 Durio zibethinus HOM05D003174 ORTHO05D003439 1.1e-27 129.0 531 26.4
Sed0000072 Sechium edule HOM05D003174 ORTHO05D003439 1.4e-27 128.6 139 42.4
TWI53G0288 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 4.1e-27 127.1 537 25.5
Glyma.13G131100 Glycine max HOM05D003174 ORTHO05D003439 7.0e-27 126.3 536 26.3
Gorai.006G174400 Gossypium raimondii HOM05D003174 ORTHO05D003439 7.0e-27 126.3 212 37.7
PGSC0003DMG400008848 Solanum tuberosum HOM05D003174 ORTHO05D003439 9.2e-27 125.9 527 27.5
QL07p047847 Quercus lobata HOM05D003174 ORTHO05D003439 1.2e-26 125.6 518 25.5
Migut.C00381 Erythranthe guttata HOM05D003174 ORTHO05D003439 1.0e-25 122.5 528 27.7
QL07p031124 Quercus lobata HOM05D003174 ORTHO05D003439 1.7e-25 121.7 139 40.3
Potri.004G077400 Populus trichocarpa HOM05D003174 ORTHO05D003439 3.0e-25 120.9 567 26.3
Gohir.A09G157600 Gossypium hirsutum HOM05D003174 ORTHO05D003439 5.0e-25 120.2 214 34.1
Lalb_Chr06g0170971 Lupinus albus HOM05D003174 ORTHO05D003439 5.0e-25 120.2 634 26.8
CsaV3_4G024810 Cucumis sativus L. HOM05D003174 ORTHO05D003439 6.6e-25 119.8 213 34.7
Dinv35623 Davidia involucrata HOM05D003174 ORTHO05D003439 2.1e-23 114.8 130 45.4
Haze_20757 Corylus avellana HOM05D003174 ORTHO05D003439 2.8e-23 114.4 534 25.5
COL.COLO4_14835 Corchorus olitorius HOM05D003174 ORTHO05D003439 6.2e-23 113.2 528 25.0
Actinidia11253 Actinidia chinensis HOM05D003174 ORTHO05D003439 1.4e-22 112.1 690 23.9
MELO3C003115.2 Cucumis melo HOM05D003174 ORTHO05D003439 4.0e-22 110.5 202 34.2
Manes.08G078100 Manihot esculenta HOM05D003174 ORTHO05D003439 5.2e-22 110.2 199 34.2
Nn2g10415 Nelumbo nucifera HOM05D003174 ORTHO05D003439 5.2e-22 110.2 539 24.5
Cpa.g.sc260.5 Carica papaya HOM05D003174 ORTHO05D003439 6.8e-22 109.8 113 46.0
TAR623G0639 Trochodendron aralioides HOM05D003174 ORTHO05D003439 6.8e-22 109.8 107 44.9
SGA_v2.0_scaffold6G03139 Striga asiatica HOM05D003174 ORTHO05D003439 8.9e-22 109.4 517 24.6
Nn1g09826 Nelumbo nucifera HOM05D003174 ORTHO05D003439 3.4e-21 107.5 107 43.9
CANSAT21G1894 Cannabis sativa HOM05D003174 ORTHO05D003439 7.5e-21 106.3 529 26.7
MBI17_g16533_MAGBIO Magnolia biondii HOM05D003174 ORTHO05D003439 1.3e-20 105.5 110 45.5
Medtr1g069015 Medicago truncatula HOM05D003174 ORTHO05D003439 1.3e-20 105.5 508 25.4
Medtr1g069020 Medicago truncatula HOM05D003174 ORTHO05D003439 2.2e-20 104.8 593 25.3
Lj3A970G57 Lonicera japonica HOM05D003174 ORTHO05D003439 3.7e-20 104.0 509 23.8
arahy.Tifrunner.gnm1.ann1.6UZP51 Arachis hypogaea HOM05D003174 ORTHO05D003439 4.9e-20 103.6 120 41.7
arahy.Tifrunner.gnm1.ann1.IJS1VI Arachis hypogaea HOM05D003174 ORTHO05D003439 6.4e-20 103.2 138 35.5
arahy.Tifrunner.gnm1.ann1.Y7W1NJ Arachis hypogaea HOM05D003174 ORTHO05D003439 6.4e-20 103.2 138 35.5
Ciclev10011079m.g Citrus clementina HOM05D003174 ORTHO05D003439 6.4e-20 103.2 694 23.1
Nitab4.5_0000761g0050 Nicotiana tabacum HOM05D003174 ORTHO05D003439 6.4e-20 103.2 206 33.0
Sabra04G0051000 Salix brachista HOM05D003174 ORTHO05D003439 6.4e-20 103.2 512 26.4
Peaxi162Scf00165g01840 Petunia axillaris HOM05D003174 ORTHO05D003439 8.3e-20 102.8 472 27.8
Nitab4.5_0004091g0070 Nicotiana tabacum HOM05D003174 ORTHO05D003439 1.9e-19 101.7 207 31.4
VMungo1127G0815 Vigna mungo HOM05D003174 ORTHO05D003439 1.9e-19 101.7 503 25.4
arahy.Tifrunner.gnm1.ann1.FD13B1 Arachis hypogaea HOM05D003174 ORTHO05D003439 2.4e-19 101.3 120 39.2
Dinv22692 Davidia involucrata HOM05D003174 ORTHO05D003439 4.1e-19 100.5 134 38.1
MD04G1124900 Malus domestica HOM05D003174 ORTHO05D003439 5.4e-19 100.1 356 27.5
HanXRQChr08g0226171 Helianthus annuus HOM05D003174 ORTHO05D003439 1.6e-18 98.6 514 27.2
Actinidia35877 Actinidia chinensis HOM05D003174 ORTHO05D003439 2.7e-18 97.8 123 39.8
TAR629G3457 Trochodendron aralioides HOM05D003174 ORTHO05D003439 2.7e-18 97.8 115 40.0
CAN.G97.37 Capsicum annuum HOM05D003174 ORTHO05D003439 4.6e-18 97.1 536 23.1
PGR004G2807 Punica granatum HOM05D003174 ORTHO05D003439 4.6e-18 97.1 223 32.7
TPR.G29857 Trifolium pratense HOM05D003174 ORTHO05D003439 6.0e-18 96.7 93 45.2
Ca_27793_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 1.3e-17 95.5 97 44.3
Eucgr.A00550 Eucalyptus grandis HOM05D003174 ORTHO05D003439 2.3e-17 94.7 127 40.2
Cfa017411 Carpinus fangiana HOM05D003174 ORTHO05D003439 3.0e-17 94.4 520 25.2
RcHm_v2.0_Chr3g0467041 Rosa chinensis HOM05D003174 ORTHO05D003439 1.1e-16 92.4 177 34.5
Cc06_g02840 Coffea canephora HOM05D003174 ORTHO05D003439 2.5e-16 91.3 83 47.0
TAR362G1036 Trochodendron aralioides HOM05D003174 ORTHO05D003439 2.5e-16 91.3 91 46.2
Hma1.2p1_0324F.1_g125650 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 5.6e-16 90.1 126 36.5
Hma1.2p1_3259F.1_g334646 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 5.6e-16 90.1 126 36.5
Aqoxy2G01410 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 9.5e-16 89.4 96 38.5
GSVIVG01013578001 Vitis vinifera HOM05D003174 ORTHO05D003439 1.2e-15 89.0 146 36.3
Sopen09g005270 Solanum pennellii HOM05D003174 ORTHO05D003439 2.1e-15 88.2 545 24.4
unitig_736.g22251 Utricularia gibba HOM05D003174 ORTHO05D003439 2.1e-15 88.2 149 33.6
Aqoxy4G02973 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 2.8e-15 87.8 103 39.8
FvH4_6g25230 Fragaria vesca HOM05D003174 ORTHO05D003439 6.2e-15 86.7 101 43.6
Psat0s2930g0040 Pisum sativum HOM05D003174 ORTHO05D003439 6.2e-15 86.7 227 29.5
PSO384G3329 Papaver somniferum HOM05D035235 ORTHO05D003439 8.1e-15 86.3 95 40.0
Solyc04g015710.3 Solanum lycopersicum HOM05D003174 ORTHO05D003439 8.1e-15 86.3 118 39.0
PSO339G3795 Papaver somniferum HOM05D003174 ORTHO05D003439 1.4e-14 85.5 95 40.0
Solyc09g010550.4 Solanum lycopersicum HOM05D003174 ORTHO05D003439 1.8e-14 85.1 535 23.7
PSO532G0060 Papaver somniferum HOM05D003174 ORTHO05D003439 2.3e-14 84.7 107 39.3
Cfa015779 Carpinus fangiana HOM05D003174 ORTHO05D003439 4.0e-14 84.0 126 37.3
CDE07G1712 Ceratophyllum demersum HOM05D003174 ORTHO05D003439 4.0e-14 84.0 604 23.8
PSO541G3184 Papaver somniferum HOM05D003174 ORTHO05D003439 4.0e-14 84.0 144 32.6
Sopen04g007790 Solanum pennellii HOM05D003174 ORTHO05D003439 5.2e-14 83.6 111 40.5
FAN05G5174 Fragaria x ananassa HOM05D003174 ORTHO05D003439 6.8e-14 83.2 101 42.6
TPR.G23103 Trifolium pratense HOM05D003174 ORTHO05D003439 8.9e-14 82.8 77 45.5
HPP92_001613 Vanilla planifolia HOM05D003174 ORTHO05D003439 8.9e-14 82.8 105 40.0
CAN.G74.6 Capsicum annuum HOM05D003174 ORTHO05D003439 2.0e-13 81.6 111 39.6
Gohir.D09G152900 Gossypium hirsutum HOM05D003174 ORTHO05D003439 3.4e-13 80.9 167 35.3
Migut.H00512 Erythranthe guttata HOM05D003174 ORTHO05D003439 4.4e-13 80.5 213 29.1
BcaC09g49501 Brassica carinata HOM05D003174 ORTHO05D003439 7.6e-13 79.7 101 40.6
Cc06_g06750 Coffea canephora HOM05D003174 ORTHO05D003439 7.6e-13 79.7 112 36.6
Duzib093G0200 Durio zibethinus HOM05D003174 ORTHO05D003439 7.6e-13 79.7 112 36.6
ECA233G2094 Erigeron canadensis HOM05D003174 ORTHO05D003439 7.6e-13 79.7 557 24.2
FAN02G1934 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.7e-12 78.6 196 30.1
RcHm_v2.0_Chr4g0407561 Rosa chinensis HOM05D003174 ORTHO05D003439 1.7e-12 78.6 91 41.8
BolC1t03544H Brassica oleracea HOM05D003174 ORTHO05D003439 2.2e-12 78.2 101 39.6
Peaxi162Scf00066g01134 Petunia axillaris HOM05D003174 ORTHO05D003439 2.2e-12 78.2 138 35.5
FAN05G2164 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.9e-12 77.8 124 35.5
QL10p045460 Quercus lobata HOM05D003174 ORTHO05D003439 2.9e-12 77.8 122 37.7
Ciclev10021601m.g Citrus clementina HOM05D003174 ORTHO05D003439 4.9e-12 77.0 113 33.6
CiPaw.02G056500 Carya illinoinensis HOM05D003174 ORTHO05D003439 6.4e-12 76.6 122 32.8
Thhalv10023956m.g Eutrema salsugineum HOM05D001877 ORTHO05D001886 6.4e-12 76.6 96 39.6
BcaB04g20191 Brassica carinata HOM05D003174 ORTHO05D003439 1.1e-11 75.9 101 38.6
BraA01t02958Z Brassica rapa HOM05D001877 ORTHO05D001886 1.4e-11 75.5 101 38.6
Haze_00723 Corylus avellana HOM05D000268 ORTHO05D000261 1.4e-11 75.5 121 38.8
Sed0019898 Sechium edule HOM05D003174 ORTHO05D003439 1.4e-11 75.5 91 38.5
CsaV3_4G003560 Cucumis sativus L. HOM05D003174 ORTHO05D003439 1.9e-11 75.1 91 36.3
MELO3C017697.2 Cucumis melo HOM05D003174 ORTHO05D003439 2.4e-11 74.7 91 37.4
Sp2g05410 Schrenkiella parvula HOM05D001877 ORTHO05D001886 2.4e-11 74.7 101 36.6
Lj3g0014619 Lotus japonicus HOM05D003174 ORTHO05D003439 3.2e-11 74.3 110 34.5
TWI15G0304 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 3.2e-11 74.3 124 32.3
TWI15G0472 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 3.2e-11 74.3 124 32.3
TWI53G0119 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 5.4e-11 73.6 80 47.5
CARHR053810 Cardamine hirsuta HOM05D003174 ORTHO05D003439 9.2e-11 72.8 93 37.6
Ca_04778_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 9.2e-11 72.8 110 31.8
THA.LOC104802302 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 9.2e-11 72.8 91 39.6
Rhsim05G0189700 Rhododendron simsii HOM05D003174 ORTHO05D003439 1.2e-10 72.4 594 22.2
Potri.017G036100 Populus trichocarpa HOM05D003174 ORTHO05D003439 1.6e-10 72.0 141 32.6
CANSAT01G0457 Cannabis sativa HOM05D003174 ORTHO05D003439 3.5e-10 70.9 91 37.4
Haze_00715 Corylus avellana HOM05D003174 ORTHO05D003439 3.5e-10 70.9 127 35.4
FvH4_4g11320 Fragaria vesca HOM05D003174 ORTHO05D003439 3.5e-10 70.9 91 40.7
AT1G58210 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 4.6e-10 70.5 91 38.5
MD04G1038200 Malus domestica HOM05D003174 ORTHO05D003439 4.6e-10 70.5 91 39.6
TPR.G22580 Trifolium pratense HOM05D003174 ORTHO05D003439 4.6e-10 70.5 115 34.8
arahy.Tifrunner.gnm1.ann1.D9JBU2 Arachis hypogaea HOM05D003174 ORTHO05D003439 6.0e-10 70.1 96 36.5
Glyma.10G043400 Glycine max HOM05D003174 ORTHO05D003439 6.0e-10 70.1 478 24.7
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 7.8e-10 69.7 636 22.3
Eucgr.I00627 Eucalyptus grandis HOM05D003174 ORTHO05D003439 7.8e-10 69.7 154 27.9
FAN17G0897 Fragaria x ananassa HOM05D003174 ORTHO05D003439 7.8e-10 69.7 91 39.6
arahy.Tifrunner.gnm1.ann1.T81LQ1 Arachis hypogaea HOM05D003174 ORTHO05D003439 1.7e-09 68.6 98 36.7
EL10Ac4g08337 Beta vulgaris HOM05D003174 ORTHO05D003439 1.7e-09 68.6 110 34.5
AUR62019568 Chenopodium quinoa HOM05D003174 ORTHO05D003439 3.0e-09 67.8 120 35.8
SGA_v2.0_scaffold204G41637 Striga asiatica HOM05D003174 ORTHO05D003439 3.0e-09 67.8 136 30.1
AL2G18170 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 3.9e-09 67.4 91 36.3
Atru.chr3.1551 Acer truncatum HOM05D003174 ORTHO05D003439 6.6e-09 66.6 117 29.1
ClCG07G015840 Citrullus lanatus HOM05D003174 ORTHO05D003439 6.6e-09 66.6 103 33.0
FAN07G2661 Fragaria x ananassa HOM05D003174 ORTHO05D003439 6.6e-09 66.6 91 38.5
Sc02g0004510 Simmondsia chinensis HOM05D003174 ORTHO05D003439 8.6e-09 66.2 102 41.2
ATR0019G037 Amborella trichopoda HOM05D003174 ORTHO05D003439 1.1e-08 65.9 121 35.5
EL10Ac4g08332 Beta vulgaris HOM05D003174 ORTHO05D003439 1.1e-08 65.9 135 31.1
AUR62043191 Chenopodium quinoa HOM05D003174 ORTHO05D003439 1.1e-08 65.9 130 33.1
arahy.Tifrunner.gnm1.ann1.7EM6TL Arachis hypogaea HOM05D003174 ORTHO05D003439 1.5e-08 65.5 156 30.1
HanXRQChr13g0395031 Helianthus annuus HOM05D003174 ORTHO05D003439 1.9e-08 65.1 132 31.8
Nitab4.5_0004701g0030 Nicotiana tabacum HOM05D003174 ORTHO05D003439 2.5e-08 64.7 358 22.9
arahy.Tifrunner.gnm1.ann1.QHLS1J Arachis hypogaea HOM05D003174 ORTHO05D003439 9.6e-08 62.8 87 36.8
HanXRQChr13g0395041 Helianthus annuus HOM05D003174 ORTHO05D003439 9.6e-08 62.8 123 33.3
Potri.007G124300 Populus trichocarpa HOM05D003174 ORTHO05D003439 9.6e-08 62.8 249 23.3
PGR083G2046 Punica granatum HOM05D003174 ORTHO05D003439 1.2e-07 62.4 92 35.9
SHI12657 Sapria himalayana HOM05D003174 ORTHO05D003439 1.2e-07 62.4 99 35.4
vmacro08698 Vaccinium macrocarpon HOM05D003174 ORTHO05D003439 2.1e-07 61.6 145 33.8
Carub.0002s0640 Capsella rubella HOM05D003174 ORTHO05D003439 2.8e-07 61.2 80 36.2
ECA233G3488 Erigeron canadensis HOM05D003174 ORTHO05D003439 6.2e-07 60.1 114 33.3
FAN09G4560 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.4e-06 58.9 84 38.1
Os04g0347900 Oryza sativa ssp. japonica HOM05D003174 ORTHO05D003439 3.1e-06 57.8 204 28.4
FAN09G4813 Fragaria x ananassa HOM05D003174 ORTHO05D003439 5.2e-06 57.0 606 21.6
Lsat_1_v5_gn_2_36541 Lactuca sativa HOM05D003174 ORTHO05D003439 8.9e-06 56.2 130 30.0


User provided reference genes

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