Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21854 Brassica carinata HOM05D006057 ORTHO05D007224 9.5e-66 253.4 136 100.0
BraA02t04741Z Brassica rapa HOM05D006057 ORTHO05D007224 4.4e-63 244.6 136 97.1
BcaC03g13034 Brassica carinata HOM05D006057 ORTHO05D007224 2.9e-62 241.9 136 95.6
BcaC03g13036 Brassica carinata HOM05D006057 ORTHO05D007224 2.9e-62 241.9 136 95.6
Sp6g39640 Schrenkiella parvula HOM05D006057 ORTHO05D007224 9.2e-61 236.9 136 94.1
C02p00760 Brassica napus HOM05D006057 ORTHO05D007224 1.6e-60 236.1 135 94.8
BolC2t06074H Brassica oleracea HOM05D006057 ORTHO05D007224 1.6e-60 236.1 135 94.8
AL6G12340 Arabidopsis lyrata HOM05D006057 ORTHO05D007224 2.1e-57 225.7 135 90.4
AT5G03050 Arabidopsis thaliana HOM05D006057 ORTHO05D007224 9.0e-56 220.3 135 88.9
Carub.0006s0184 Capsella rubella HOM05D006057 ORTHO05D007224 3.4e-55 218.4 135 88.1
CARHR210270 Cardamine hirsuta HOM05D006057 ORTHO05D007224 3.2e-53 211.8 135 85.2
Thhalv10015298m.g Eutrema salsugineum HOM05D006057 ORTHO05D007224 7.1e-53 210.7 124 91.1
BcaC06g32028 Brassica carinata HOM05D006057 ORTHO05D007224 2.7e-52 208.8 135 86.7
BraA10t45317Z Brassica rapa HOM05D006057 ORTHO05D007224 6.0e-52 207.6 135 87.4
BcaC06g32027 Brassica carinata HOM05D006057 ORTHO05D007224 1.1e-50 203.4 135 85.9
BcaNung04734 Brassica carinata HOM05D006057 ORTHO05D007224 1.1e-50 203.4 135 85.9
BolC9t60103H Brassica oleracea HOM05D006057 ORTHO05D007224 1.1e-50 203.4 135 85.9
Aa31LG1G21980 Aethionema arabicum HOM05D006057 ORTHO05D007224 1.5e-50 203.0 134 81.3
C09p73700 Brassica napus HOM05D006057 ORTHO05D007224 5.6e-50 201.1 135 85.2
BolC9t60100H Brassica oleracea HOM05D006057 ORTHO05D007224 1.6e-49 199.5 135 84.4
BcaNung05509 Brassica carinata HOM05D006057 ORTHO05D007224 8.4e-46 187.2 149 75.8
Atru.chr5.830 Acer truncatum HOM05D006057 ORTHO05D007224 1.6e-36 156.4 124 67.7
Potri.014G110300 Populus trichocarpa HOM05D006057 ORTHO05D007224 2.1e-36 156.0 127 66.9
Duzib138G1502 Durio zibethinus HOM05D006057 ORTHO05D007224 1.3e-35 153.3 130 63.8
COL.COLO4_23092 Corchorus olitorius HOM05D006057 ORTHO05D007224 1.8e-35 152.9 130 66.2
Manes.05G006500 Manihot esculenta HOM05D006057 ORTHO05D007224 5.1e-35 151.4 123 65.9
Ciclev10023548m.g Citrus clementina HOM05D006057 ORTHO05D007224 1.9e-34 149.4 116 65.5
Gohir.D12G122500 Gossypium hirsutum HOM05D006057 ORTHO05D007224 1.9e-34 149.4 131 65.6
QL09p037524 Quercus lobata HOM05D006057 ORTHO05D007224 3.3e-34 148.7 132 62.9
arahy.Tifrunner.gnm1.ann1.78VVNS Arachis hypogaea HOM05D006057 ORTHO05D007224 5.6e-34 147.9 128 64.1
arahy.Tifrunner.gnm1.ann1.TF3SPP Arachis hypogaea HOM05D006057 ORTHO05D007224 7.4e-34 147.5 128 64.1
Eucgr.A00985 Eucalyptus grandis HOM05D006057 ORTHO05D007224 9.6e-34 147.1 129 59.7
Gorai.008G133300 Gossypium raimondii HOM05D006057 ORTHO05D007224 1.6e-33 146.4 130 65.4
Cpa.g.sc57.50 Carica papaya HOM05D006057 ORTHO05D007224 3.7e-33 145.2 126 64.3
TWI14G0531 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 6.2e-33 144.4 134 61.2
PGR042G0310 Punica granatum HOM05D006057 ORTHO05D007224 9.0e-32 140.6 128 60.2
Gohir.A12G118700 Gossypium hirsutum HOM05D006057 ORTHO05D007224 2.0e-31 139.4 131 61.8
Psat6g157560 Pisum sativum HOM05D006057 ORTHO05D007224 2.6e-31 139.0 123 61.0
Sed0018142 Sechium edule HOM05D006057 ORTHO05D007224 2.6e-31 139.0 123 62.6
TAR633G2394 Trochodendron aralioides HOM05D006057 ORTHO05D007224 3.4e-31 138.7 124 62.1
GSVIVG01028268001 Vitis vinifera HOM05D006057 ORTHO05D007224 3.4e-31 138.7 112 64.3
Hma1.2p1_0350F.1_g132530 Hydrangea macrophylla HOM05D006057 ORTHO05D007224 1.0e-30 137.1 129 62.8
TWI59G0504 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 1.0e-30 137.1 124 63.7
Medtr4g118050 Medicago truncatula HOM05D006057 ORTHO05D007224 2.2e-30 136.0 123 62.6
Sabra02G0131200 Salix brachista HOM05D006057 ORTHO05D007224 2.2e-30 136.0 128 60.2
TPR.G3097 Trifolium pratense HOM05D006057 ORTHO05D007224 2.2e-30 136.0 123 61.0
Lj5g0024678 Lotus japonicus HOM05D006057 ORTHO05D007224 2.9e-30 135.6 123 61.8
Glyma.10G140400 Glycine max HOM05D006057 ORTHO05D007224 3.8e-30 135.2 127 61.4
Medtr1g085355 Medicago truncatula HOM05D006057 ORTHO05D007224 3.8e-30 135.2 123 61.8
Nn4g25242 Nelumbo nucifera HOM05D006057 ORTHO05D007224 8.4e-30 134.0 130 60.0
BcaNung05508 Brassica carinata HOM05D006057 ORTHO05D007224 1.4e-29 133.3 119 66.4
Phvul.007G207500 Phaseolus vulgaris HOM05D006057 ORTHO05D007224 1.4e-29 133.3 129 55.0
SHI19776 Sapria himalayana HOM05D006057 ORTHO05D007224 1.9e-29 132.9 105 61.9
Lj1C4G2 Lonicera japonica HOM05D006057 ORTHO05D007224 3.2e-29 132.1 120 60.8
Ca_10224_v3 Cicer arietinum L. HOM05D006057 ORTHO05D007224 4.2e-29 131.7 123 59.3
Lalb_Chr02g0147311 Lupinus albus HOM05D006057 ORTHO05D007224 4.2e-29 131.7 121 60.3
Medtr1g085440 Medicago truncatula HOM05D006057 ORTHO05D007224 4.2e-29 131.7 123 59.3
CSS0031729 Camellia sinensis var. sinensis HOM05D006057 ORTHO05D007224 5.5e-29 131.3 128 57.8
Lju2566A1T37 Lonicera japonica HOM05D006057 ORTHO05D007224 5.5e-29 131.3 120 60.8
CANSAT25G1403 Cannabis sativa HOM05D006057 ORTHO05D007224 7.1e-29 131.0 125 58.4
Gohir.A07G132650 Gossypium hirsutum HOM05D006057 ORTHO05D007224 7.1e-29 131.0 101 65.3
Nitab4.5_0002046g0150 Nicotiana tabacum HOM05D006057 ORTHO05D007224 4.6e-28 128.3 121 57.0
vmacro02351 Vaccinium macrocarpon HOM05D006057 ORTHO05D007224 4.6e-28 128.3 128 56.2
ClCG10G013240 Citrullus lanatus HOM05D006057 ORTHO05D007224 6.0e-28 127.9 132 59.1
RcHm_v2.0_Chr2g0148291 Rosa chinensis HOM05D006057 ORTHO05D007224 6.0e-28 127.9 133 53.4
Haze_05170 Corylus avellana HOM05D006057 ORTHO05D007224 1.0e-27 127.1 116 58.6
Prupe.3G028700 Prunus persica HOM05D006057 ORTHO05D007224 1.3e-27 126.7 132 54.5
Sopen03g037330 Solanum pennellii HOM05D006057 ORTHO05D007224 1.8e-27 126.3 121 58.7
Nitab4.5_0002450g0080 Nicotiana tabacum HOM05D006057 ORTHO05D007224 2.3e-27 125.9 121 58.7
MD17G1156700 Malus domestica HOM05D006057 ORTHO05D007224 3.0e-27 125.6 132 53.0
MELO3C026900.2 Cucumis melo HOM05D006057 ORTHO05D007224 5.1e-27 124.8 132 56.8
Solyc03g118440.3 Solanum lycopersicum HOM05D006057 ORTHO05D007224 5.1e-27 124.8 121 57.9
Rhsim01G0001300 Rhododendron simsii HOM05D006057 ORTHO05D007224 6.7e-27 124.4 128 55.5
PGSC0003DMG400014183 Solanum tuberosum HOM05D006057 ORTHO05D007224 6.7e-27 124.4 121 57.9
CsaV3_3G043390 Cucumis sativus L. HOM05D006057 ORTHO05D007224 1.1e-26 123.6 132 57.6
FvH4_6g36280 Fragaria vesca HOM05D006057 ORTHO05D007224 1.1e-26 123.6 135 54.1
Peaxi162Scf00314g00430 Petunia axillaris HOM05D006057 ORTHO05D007224 1.9e-26 122.9 123 56.9
Migut.L01023 Erythranthe guttata HOM05D006057 ORTHO05D007224 5.7e-26 121.3 133 53.4
MBI18_g03875_MAGBIO Magnolia biondii HOM05D006057 ORTHO05D007224 5.7e-26 121.3 120 53.3
VMungo0720G1137 Vigna mungo HOM05D006057 ORTHO05D007224 5.7e-26 121.3 111 58.6
Migut.L00831 Erythranthe guttata HOM05D006057 ORTHO05D007224 9.7e-26 120.6 99 60.6
Oeu048368.1 Olea europaea HOM05D006057 ORTHO05D007224 9.7e-26 120.6 128 54.7
Migut.L00999 Erythranthe guttata HOM05D006057 ORTHO05D007224 1.3e-25 120.2 101 59.4
ECA238G2998 Erigeron canadensis HOM05D006057 ORTHO05D007224 8.2e-25 117.5 126 53.2
CAN.G843.33 Capsicum annuum HOM05D006057 ORTHO05D007224 4.1e-24 115.2 121 55.4
PSO339G1810 Papaver somniferum HOM05D006057 ORTHO05D007224 6.9e-24 114.4 121 54.5
Aqoxy5G02874 Aquilegia oxysepala HOM05D006057 ORTHO05D007224 9.0e-24 114.0 125 53.6
CDE01G0754 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 9.0e-24 114.0 124 51.6
Nitab4.5_0001841g0090 Nicotiana tabacum HOM05D006057 ORTHO05D007224 9.0e-24 114.0 132 54.5
DCAR_012292 Daucus carota HOM05D006057 ORTHO05D007224 2.0e-23 112.8 134 51.5
DCAR_012291 Daucus carota HOM05D006057 ORTHO05D007224 2.6e-23 112.5 134 52.2
HanXRQChr07g0194641 Helianthus annuus HOM05D006057 ORTHO05D007224 5.9e-23 111.3 134 50.0
PSO081G0045 Papaver somniferum HOM05D006057 ORTHO05D007224 7.6e-23 110.9 121 53.7
Lsat_1_v5_gn_2_108401 Lactuca sativa HOM05D006057 ORTHO05D007224 1.0e-22 110.5 115 54.8
Nitab4.5_0010904g0040 Nicotiana tabacum HOM05D006057 ORTHO05D007224 1.0e-22 110.5 132 53.0
PSO170G4276 Papaver somniferum HOM05D006057 ORTHO05D007224 1.0e-22 110.5 125 53.6
Glyma.20G089200 Glycine max HOM05D006057 ORTHO05D007224 1.7e-22 109.8 138 51.4
Potri.002G184600 Populus trichocarpa HOM05D006057 ORTHO05D007224 2.2e-22 109.4 105 58.1
Sc09g0000780 Simmondsia chinensis HOM05D006057 ORTHO05D007224 6.5e-22 107.8 119 49.6
SGA_v2.0_scaffold38G15005 Striga asiatica HOM05D006057 ORTHO05D007224 1.4e-21 106.7 131 47.3
unitig_26.g10007 Utricularia gibba HOM05D006057 ORTHO05D007224 1.4e-21 106.7 133 48.1
Cc08_g05070 Coffea canephora HOM05D006057 ORTHO05D007224 3.2e-21 105.5 107 54.2
Actinidia21332 Actinidia chinensis HOM05D006057 ORTHO05D007224 1.6e-20 103.2 130 49.2
SGA_v2.0_scaffold36G14563 Striga asiatica HOM05D006057 ORTHO05D007224 3.6e-20 102.1 128 49.2
HPP92_026861 Vanilla planifolia HOM05D006057 ORTHO05D007224 3.6e-20 102.1 125 52.0
EL10Ac4g10232 Beta vulgaris HOM05D006057 ORTHO05D007224 1.0e-19 100.5 131 43.5
AUR62000136 Chenopodium quinoa HOM05D006057 ORTHO05D007224 1.0e-19 100.5 117 44.4
Ah.04g162100 Amaranthus hybridus HOM05D006057 ORTHO05D007224 1.8e-19 99.8 128 46.1
Ah.06g194050 Amaranthus hybridus HOM05D006057 ORTHO05D007224 3.0e-19 99.0 127 45.7
Hund22023 Selenicereus undatus HOM05D006057 ORTHO05D007224 3.0e-19 99.0 123 46.3
Gorai.001G149000 Gossypium raimondii HOM05D006057 ORTHO05D007224 3.3e-18 95.5 65 72.3
ATR0019G040 Amborella trichopoda HOM05D006057 ORTHO05D007224 4.3e-18 95.1 97 51.5
SEGI_31615 Sequoiadendron giganteum HOM05D006057 ORTHO05D007224 5.7e-18 94.7 122 45.1
CDE12G0816 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 1.7e-17 93.2 71 63.4
Gohir.D07G136950 Gossypium hirsutum HOM05D006057 ORTHO05D007224 1.4e-16 90.1 65 72.3
CiPaw.07G127700 Carya illinoinensis HOM05D006057 ORTHO05D007224 3.1e-16 89.0 108 47.2
AUR62019316 Chenopodium quinoa HOM05D006057 ORTHO05D007224 5.3e-16 88.2 127 41.7
Zm00001eb000680 Zea mays HOM05D006057 ORTHO05D007224 2.0e-15 86.3 99 46.5
SMO361G0765 Selaginella moellendorffii HOM05D006057 ORTHO05D007224 7.7e-15 84.3 86 52.3
Os03g0108700 Oryza sativa ssp. japonica HOM05D006057 ORTHO05D007224 1.3e-14 83.6 78 52.6
TPR.G3076 Trifolium pratense HOM05D006057 ORTHO05D007224 2.5e-13 79.3 87 54.0
Dinv05504 Davidia involucrata HOM05D006057 ORTHO05D007224 3.0e-11 72.4 89 52.8
Pp3c25_8550 Physcomitrium patens HOM05D006057 ORTHO05D007224 5.7e-10 68.2 123 35.0
CBR_g39249 Chara braunii HOM05D006057 ORTHO05D007224 1.7e-09 66.6 80 40.0
A10p32810 Brassica napus HOM05D000156 ORTHO05D001430 1.5e-07 60.1 70 58.6
Mapoly0076s0084 Marchantia polymorpha HOM05D006057 ORTHO05D007224 1.5e-07 60.1 103 32.0


User provided reference genes

Program Settings