Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 1.4e-127 459.5 223 100.0
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 1.5e-121 439.5 223 95.5
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 3.8e-120 434.9 222 94.6
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 3.8e-120 434.9 222 94.6
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 4.2e-119 431.4 227 93.8
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 7.2e-119 430.6 223 93.3
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 4.6e-118 427.9 218 95.4
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 4.6e-118 427.9 218 95.4
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 6.3e-115 417.5 225 91.1
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 1.8e-114 416.0 225 90.7
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 3.1e-114 415.2 224 91.1
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 4.5e-113 411.4 227 90.3
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 1.9e-111 406.0 227 89.4
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 3.3e-108 395.2 225 84.4
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 1.6e-102 376.3 226 83.6
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 6.7e-101 370.9 218 86.7
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 3.7e-99 365.2 218 83.0
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 3.7e-99 365.2 218 83.0
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 6.5e-96 354.4 215 77.7
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 8.5e-96 354.0 222 76.1
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 1.5e-95 353.2 220 81.4
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 4.2e-95 351.7 216 77.3
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 4.8e-91 338.2 211 75.8
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 9.1e-90 334.0 211 75.4
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 1.6e-89 333.2 217 73.3
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 1.6e-89 333.2 215 74.0
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 2.0e-89 332.8 217 75.1
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 2.7e-89 332.4 219 73.1
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 1.0e-88 330.5 220 71.4
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 6.5e-88 327.8 219 71.7
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 6.5e-88 327.8 212 73.6
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 1.5e-87 326.6 212 73.6
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 1.9e-87 326.2 216 74.1
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 3.2e-87 325.5 210 73.3
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 5.5e-87 324.7 212 73.1
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 2.1e-86 322.8 210 75.2
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 6.1e-86 321.2 209 73.7
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 8.0e-86 320.9 212 73.6
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 8.0e-86 320.9 211 74.4
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.4e-85 320.1 212 72.2
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 2.3e-85 319.3 213 75.1
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 4.0e-85 318.5 212 73.6
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.5e-84 316.6 209 72.2
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 2.0e-84 316.2 212 71.7
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 3.4e-84 315.5 217 71.4
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 9.8e-84 313.9 217 70.5
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 1.7e-83 313.2 220 69.1
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 4.8e-83 311.6 212 69.3
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 4.8e-83 311.6 212 69.8
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 4.8e-83 311.6 212 69.8
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 4.8e-83 311.6 210 71.4
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 4.8e-83 311.6 210 71.4
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 6.3e-83 311.2 212 69.3
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 8.3e-83 310.8 210 71.0
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 8.3e-83 310.8 212 70.8
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 5.4e-82 308.1 210 68.6
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 5.4e-82 308.1 220 68.2
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 5.4e-82 308.1 212 70.8
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 1.2e-81 307.0 212 71.2
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 1.2e-81 307.0 217 70.5
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 1.6e-81 306.6 216 69.9
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 2.0e-81 306.2 213 70.4
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 2.0e-81 306.2 213 69.0
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 7.7e-81 304.3 212 68.4
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 1.0e-80 303.9 172 87.2
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 2.2e-80 302.8 221 67.4
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 2.9e-80 302.4 213 69.0
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 2.9e-80 302.4 218 67.9
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 3.8e-80 302.0 213 69.5
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 6.5e-80 301.2 213 68.1
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 1.1e-79 300.4 216 66.7
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 1.5e-79 300.1 212 69.8
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 1.5e-79 300.1 212 69.8
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 1.5e-79 300.1 212 69.8
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 1.5e-79 300.1 212 69.8
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 1.5e-79 300.1 212 69.8
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 1.9e-79 299.7 222 68.0
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 2.5e-79 299.3 212 69.3
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 8.0e-78 294.3 215 67.9
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 2.6e-76 289.3 210 67.6
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 9.8e-76 287.3 210 67.6
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 1.3e-75 287.0 219 66.7
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 6.3e-75 284.6 227 64.8
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 8.3e-75 284.3 210 67.1
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 1.1e-74 283.9 210 67.1
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.8e-74 283.1 214 66.8
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.8e-74 283.1 214 66.8
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 3.1e-74 282.3 211 65.9
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 3.1e-74 282.3 215 66.0
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 4.1e-74 282.0 216 64.4
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 1.2e-73 280.4 212 66.0
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 1.2e-73 280.4 216 65.7
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 2.7e-73 279.3 216 65.7
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 2.7e-73 279.3 202 66.8
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 3.5e-73 278.9 210 66.2
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 4.5e-73 278.5 212 66.0
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 4.5e-73 278.5 210 64.8
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 4.5e-73 278.5 210 64.8
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 1.7e-72 276.6 228 64.0
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 3.8e-72 275.4 211 64.9
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 6.6e-72 274.6 213 63.8
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 2.5e-71 272.7 210 61.9
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 4.3e-71 271.9 212 64.6
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 4.7e-70 268.5 210 62.9
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 1.0e-69 267.3 184 70.1
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 1.4e-69 266.9 211 65.9
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 5.2e-69 265.0 216 61.6
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 1.2e-68 263.8 216 59.7
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 2.0e-68 263.1 213 59.6
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 2.0e-68 263.1 213 59.6
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 2.0e-68 263.1 212 62.7
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 1.3e-67 260.4 214 58.4
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 4.1e-66 255.4 219 59.4
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 5.4e-66 255.0 212 61.3
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 3.5e-65 252.3 215 60.5
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 3.0e-64 249.2 212 55.2
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 3.0e-64 249.2 216 54.2
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 1.9e-63 246.5 210 59.0
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 2.3e-61 239.6 164 70.1
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 6.8e-61 238.0 215 58.1
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 1.2e-60 237.3 165 68.5
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 2.6e-60 236.1 213 55.9
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 3.7e-59 232.3 164 68.9
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 9.2e-58 227.6 168 67.3
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 3.3e-55 219.2 179 62.6
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 4.3e-55 218.8 131 77.1
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 2.1e-54 216.5 164 62.2
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.7e-51 206.8 210 54.8
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 2.4e-50 203.0 212 51.9
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 1.1e-47 194.1 213 51.6
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 1.1e-45 187.6 134 67.2
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 4.0e-45 185.7 129 69.0
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 8.9e-45 184.5 215 47.0
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 6.6e-40 168.3 210 48.6
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 7.3e-39 164.9 134 61.9
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 1.5e-31 140.6 91 73.6
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 6.9e-29 131.7 92 69.6
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 7.6e-28 128.3 95 66.3
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 1.6e-14 84.0 188 33.5
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 7.9e-09 65.1 160 30.6
Glyma.01G171800 Glycine max HOM05D003144 ORTHO05D003539 2.5e-07 60.1 141 29.8
VMungo1215G0425 Vigna mungo HOM05D003144 ORTHO05D003539 4.3e-07 59.3 183 29.0
DCAR_021484 Daucus carota HOM05D003144 ORTHO05D003539 7.4e-07 58.5 137 29.2
Lj2g0003092 Lotus japonicus HOM05D003144 ORTHO05D003539 7.4e-07 58.5 132 28.8
PRCOL_00003536 Prasinoderma coloniale HOM05D003144 ORTHO05D003539 7.4e-07 58.5 122 31.1
Glyma.11G071400 Glycine max HOM05D003144 ORTHO05D003539 9.6e-07 58.2 161 28.6
Phvul.002G033600 Phaseolus vulgaris HOM05D003144 ORTHO05D003539 9.6e-07 58.2 143 31.5
SMO367G0089 Selaginella moellendorffii HOM05D003144 ORTHO05D003539 2.1e-06 57.0 136 31.6
HanXRQChr14g0440521 Helianthus annuus HOM05D003144 ORTHO05D003539 2.8e-06 56.6 133 32.3


User provided reference genes

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