Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 1.9e-157 559.3 313 100.0
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 1.7e-118 429.9 315 79.4
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 1.7e-118 429.9 315 79.4
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 2.9e-118 429.1 315 79.4
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 6.7e-115 417.9 316 79.4
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 6.5e-102 374.8 303 73.3
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 4.4e-90 335.5 299 65.9
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 3.7e-89 332.4 306 66.0
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 7.0e-88 328.2 301 65.8
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.5e-85 320.5 299 63.2
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 2.6e-82 309.7 295 65.1
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.7e-57 227.3 329 47.1
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.2e-47 194.5 345 43.5
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 9.6e-37 158.3 342 38.6
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.6e-36 157.5 327 41.3
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 3.7e-36 156.4 335 38.5
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 4.8e-36 156.0 346 41.3
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.8e-35 154.1 339 37.8
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 3.1e-35 153.3 332 40.4
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 6.9e-35 152.1 339 39.8
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 6.9e-35 152.1 305 40.3
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 2.6e-34 150.2 305 40.3
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 1.0e-33 148.3 328 40.9
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 1.7e-33 147.5 346 39.3
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.2e-33 147.1 308 39.6
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 3.8e-33 146.4 341 39.0
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 4.2e-32 142.9 311 37.6
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 4.2e-32 142.9 337 36.5
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 5.5e-32 142.5 316 37.0
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 6.0e-31 139.0 329 36.2
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 6.0e-31 139.0 323 38.1
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 7.9e-31 138.7 352 36.4
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.0e-30 138.3 329 36.2
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 1.3e-30 137.9 272 41.9
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 1.3e-30 137.9 317 37.9
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 1.8e-30 137.5 337 37.7
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 3.9e-30 136.3 347 38.0
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 5.1e-30 136.0 303 39.6
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 1.1e-29 134.8 276 40.2
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.5e-29 134.4 244 41.8
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 1.9e-29 134.0 342 34.5
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 5.6e-29 132.5 325 36.6
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 7.4e-29 132.1 337 37.4
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 7.4e-29 132.1 340 35.6
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 7.4e-29 132.1 340 36.5
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 2.1e-28 130.6 339 36.9
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 8.2e-28 128.6 304 38.5
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.4e-27 127.9 328 37.2
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 5.3e-27 125.9 282 36.5
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 5.3e-27 125.9 303 37.3
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 6.9e-27 125.6 347 36.3
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 9.0e-27 125.2 365 34.5
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 9.0e-27 125.2 234 42.3
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 9.0e-27 125.2 234 42.3
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 1.5e-26 124.4 233 41.2
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 1.5e-26 124.4 233 41.2
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 1.5e-26 124.4 289 37.4
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 2.0e-26 124.0 233 39.9
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 3.4e-26 123.2 233 41.2
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 3.4e-26 123.2 233 41.2
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 1.0e-25 121.7 300 36.7
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.0e-25 121.7 312 36.5
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 1.3e-25 121.3 324 38.6
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 2.2e-25 120.6 303 36.3
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 2.9e-25 120.2 342 36.5
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 3.8e-25 119.8 332 36.1
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 1.1e-24 118.2 342 36.3
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 1.4e-24 117.9 282 36.9
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.4e-24 117.9 282 36.5
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.4e-24 117.9 282 36.9
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 1.4e-24 117.9 304 37.2
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.9e-24 117.5 352 36.4
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.9e-24 117.5 142 51.4
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.9e-24 117.5 357 32.8
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 2.5e-24 117.1 353 35.7
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 2.5e-24 117.1 297 35.0
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 3.2e-24 116.7 316 37.3
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 3.2e-24 116.7 323 36.2
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 4.2e-24 116.3 282 36.5
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 7.1e-24 115.5 312 36.9
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 7.1e-24 115.5 312 36.9
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 7.1e-24 115.5 215 40.9
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 2.1e-23 114.0 304 36.5
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.1e-23 114.0 242 39.7
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 6.1e-23 112.5 125 50.4
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 6.1e-23 112.5 317 34.7
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 7.9e-23 112.1 323 33.4
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 1.0e-22 111.7 278 35.3
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 1.3e-22 111.3 310 36.5
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 2.3e-22 110.5 300 35.3
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 3.9e-22 109.8 312 36.2
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 5.1e-22 109.4 302 33.1
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 5.1e-22 109.4 296 32.4
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 6.7e-22 109.0 321 34.9
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 8.7e-22 108.6 322 36.6
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 1.1e-21 108.2 309 35.6
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 1.5e-21 107.8 295 34.9
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 2.5e-21 107.1 299 34.8
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 3.3e-21 106.7 301 34.9
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 3.3e-21 106.7 213 39.9
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 3.3e-21 106.7 307 36.2
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 4.3e-21 106.3 338 33.4
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 9.7e-21 105.1 296 33.4
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 9.7e-21 105.1 314 36.0
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 1.6e-20 104.4 129 50.4
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 2.2e-20 104.0 215 41.9
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 4.8e-20 102.8 237 38.0
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 4.8e-20 102.8 313 34.2
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 1.1e-19 101.7 306 34.3
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-19 101.7 215 38.6
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.8e-19 100.9 309 34.3
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 4.1e-19 99.8 328 32.3
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 6.9e-19 99.0 357 30.8
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 6.9e-19 99.0 305 33.4
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 2.0e-18 97.4 79 67.1
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 2.0e-18 97.4 306 35.0
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 5.9e-18 95.9 310 34.5
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 1.0e-17 95.1 233 36.9
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 5.0e-17 92.8 313 32.6
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 2.5e-16 90.5 337 31.8
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 4.2e-16 89.7 354 33.9
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 7.2e-16 89.0 330 29.1
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 1.2e-15 88.2 294 33.7
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 3.6e-15 86.7 291 32.6
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 3.6e-15 86.7 314 29.9
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.8e-14 84.3 237 35.0
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 2.3e-14 84.0 275 32.7
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 3.0e-14 83.6 283 33.2
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 3.0e-14 83.6 72 61.1
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 1.5e-13 81.3 302 34.8
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 9.7e-13 78.6 309 30.4
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 1.3e-12 78.2 79 58.2
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 1.3e-12 78.2 79 57.0
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.7e-12 77.8 298 30.2
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 1.7e-12 77.8 237 34.2
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 1.7e-12 77.8 74 54.1
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 2.2e-12 77.4 250 33.6
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 3.7e-12 76.6 300 31.0
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 3.1e-11 73.6 293 28.7
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 4.1e-11 73.2 390 28.5
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 5.3e-11 72.8 219 34.2
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 9.1e-11 72.0 273 33.0
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 5.9e-10 69.3 306 26.5
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 3.8e-09 66.6 316 31.3
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 7.9e-07 58.9 98 41.8
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 3.0e-06 57.0 226 31.9


User provided reference genes

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