Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21850 Brassica carinata HOM05D007569 ORTHO05D009268 2.3e-37 158.3 76 100.0
BcaC03g13030 Brassica carinata HOM05D007569 ORTHO05D009268 2.7e-33 144.8 76 90.8
C02p00800 Brassica napus HOM05D004310 ORTHO05D009268 3.5e-33 144.4 74 91.9
BraA02t04745Z Brassica rapa HOM05D007569 ORTHO05D009268 3.5e-33 144.4 74 91.9
Thhalv10015759m.g Eutrema salsugineum HOM05D007569 ORTHO05D009268 1.1e-31 139.4 74 87.8
BolC2t06078H Brassica oleracea HOM05D004310 ORTHO05D009268 9.5e-31 136.3 84 81.0
Sp6g39590 Schrenkiella parvula HOM05D007569 ORTHO05D009268 1.4e-29 132.5 77 84.4
CARHR210230 Cardamine hirsuta HOM05D007569 ORTHO05D009268 2.7e-25 118.2 77 77.9
BcaB01g05860 Brassica carinata HOM05D007569 ORTHO05D009268 7.8e-25 116.7 75 78.7
A03p01020 Brassica napus HOM05D007569 ORTHO05D009268 7.8e-25 116.7 75 76.0
C03p01310 Brassica napus HOM05D007569 ORTHO05D009268 7.8e-25 116.7 75 78.7
BolC3t12690H Brassica oleracea HOM05D007569 ORTHO05D009268 7.8e-25 116.7 75 78.7
BraA03t09483Z Brassica rapa HOM05D007569 ORTHO05D009268 7.8e-25 116.7 75 76.0
AL6G12400 Arabidopsis lyrata HOM05D007569 ORTHO05D009268 3.9e-24 114.4 77 75.3
AT5G03120 Arabidopsis thaliana HOM05D007569 ORTHO05D009268 3.9e-24 114.4 76 72.4
Carub.0006s0192 Capsella rubella HOM05D007569 ORTHO05D009268 1.2e-22 109.4 79 70.9
Aa31LG1G21950 Aethionema arabicum HOM05D007569 ORTHO05D009268 1.0e-16 89.7 72 61.1
THA.LOC104826977 Tarenaya hassleriana HOM05D007569 ORTHO05D009268 1.7e-11 72.4 72 55.6
Cpa.g.sc368.3 Carica papaya HOM05D007569 ORTHO05D009268 1.9e-10 68.9 62 50.0
Duzib093G0005 Durio zibethinus HOM05D007569 ORTHO05D009268 5.4e-10 67.4 55 56.4
RcHm_v2.0_Chr3g0469031 Rosa chinensis HOM05D007569 ORTHO05D009268 1.6e-09 65.9 72 48.6
Prupe.6G240500 Prunus persica HOM05D007569 ORTHO05D009268 2.7e-09 65.1 66 53.0
CiPaw.09G178900 Carya illinoinensis HOM05D007569 ORTHO05D009268 3.5e-09 64.7 61 50.8
Thecc.05G055900 Theobroma cacao HOM05D007569 ORTHO05D009268 4.6e-09 64.3 61 49.2
COL.COLO4_27060 Corchorus olitorius HOM05D007569 ORTHO05D009268 7.8e-09 63.5 79 44.3
FAN05G3967 Fragaria x ananassa HOM05D007569 ORTHO05D009268 5.1e-08 60.8 58 51.7
Haze_20627 Corylus avellana HOM05D007569 ORTHO05D009268 8.7e-08 60.1 65 44.6
RhsimUnG0115600 Rhododendron simsii HOM05D007569 ORTHO05D009268 1.1e-07 59.7 66 48.5
FvH4_6g15530 Fragaria vesca HOM05D007569 ORTHO05D009268 1.5e-07 59.3 83 41.0
FAN14G4266 Fragaria x ananassa HOM05D007569 ORTHO05D009268 1.5e-07 59.3 83 41.0
Gohir.A13G025100 Gossypium hirsutum HOM05D007569 ORTHO05D009268 1.5e-07 59.3 61 47.5
Ciclev10013224m.g Citrus clementina HOM05D007569 ORTHO05D009268 1.9e-07 58.9 67 46.3
Gorai.013G026900 Gossypium raimondii HOM05D007569 ORTHO05D009268 1.9e-07 58.9 64 42.2
MD04G1102400 Malus domestica HOM05D007569 ORTHO05D009268 4.3e-07 57.8 68 48.5
Potri.006G130400 Populus trichocarpa HOM05D007569 ORTHO05D009268 4.3e-07 57.8 61 54.1
Potri.016G087000 Populus trichocarpa HOM05D007569 ORTHO05D009268 4.3e-07 57.8 61 59.0
CiPaw.10G136400 Carya illinoinensis HOM05D007569 ORTHO05D009268 7.3e-07 57.0 63 49.2
CiPaw.10G136600 Carya illinoinensis HOM05D007569 ORTHO05D009268 7.3e-07 57.0 63 49.2
Cc06_g03690 Coffea canephora HOM05D007569 ORTHO05D009268 7.3e-07 57.0 59 42.4
Dinv35729 Davidia involucrata HOM05D007569 ORTHO05D009268 7.3e-07 57.0 81 38.3
Gohir.A01G216400 Gossypium hirsutum HOM05D007569 ORTHO05D009268 1.2e-06 56.2 57 50.9
Gohir.D13G023800 Gossypium hirsutum HOM05D007569 ORTHO05D009268 1.2e-06 56.2 64 40.6
Gorai.002G249500 Gossypium raimondii HOM05D007569 ORTHO05D009268 1.2e-06 56.2 57 50.9
CSS0032625 Camellia sinensis var. sinensis HOM05D007569 ORTHO05D009268 1.6e-06 55.8 66 37.9
Sabra16G0093200 Salix brachista HOM05D007569 ORTHO05D009268 1.6e-06 55.8 61 52.5
Manes.08G004500 Manihot esculenta HOM05D007569 ORTHO05D009268 2.1e-06 55.5 75 45.3
Psat3g044160 Pisum sativum HOM05D007569 ORTHO05D009268 2.1e-06 55.5 42 59.5
QL07p045078 Quercus lobata HOM05D007569 ORTHO05D009268 2.1e-06 55.5 61 45.9
EL10Ac7g16512 Beta vulgaris HOM05D007569 ORTHO05D009268 2.8e-06 55.1 62 46.8
ECA248G1179 Erigeron canadensis HOM05D007569 ORTHO05D009268 2.8e-06 55.1 48 54.2
Lalb_Chr25g0289201 Lupinus albus HOM05D007569 ORTHO05D009268 2.8e-06 55.1 60 45.0
GSVIVG01025645001 Vitis vinifera HOM05D007569 ORTHO05D009268 2.8e-06 55.1 82 41.5
Glyma.13G138100 Glycine max HOM05D007569 ORTHO05D009268 4.7e-06 54.3 60 48.3
Medtr7g100860 Medicago truncatula HOM05D007569 ORTHO05D009268 4.7e-06 54.3 63 42.9
Nitab4.5_0008568g0070 Nicotiana tabacum HOM05D007569 ORTHO05D009268 4.7e-06 54.3 59 47.5
Migut.L01668 Erythranthe guttata HOM05D007569 ORTHO05D009268 6.2e-06 53.9 66 43.9
Nitab4.5_0003871g0030 Nicotiana tabacum HOM05D007569 ORTHO05D009268 6.2e-06 53.9 59 47.5
Peaxi162Scf00005g00394 Petunia axillaris HOM05D007569 ORTHO05D009268 6.2e-06 53.9 64 46.9


User provided reference genes

Program Settings