Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21832 Brassica carinata HOM05D006544 ORTHO05D008757 6.7e-125 450.7 224 100.0
Sp6g39380 Schrenkiella parvula HOM05D006544 ORTHO05D008757 2.2e-112 409.1 222 92.3
BcaC03g13011 Brassica carinata HOM05D006544 ORTHO05D008757 1.0e-109 400.2 224 88.8
BraA02t04758Z Brassica rapa HOM05D006544 ORTHO05D008757 2.3e-109 399.1 224 87.9
BolC2t06093H Brassica oleracea HOM05D006544 ORTHO05D008757 5.2e-109 397.9 225 88.9
C02p01030 Brassica napus HOM05D006544 ORTHO05D008757 4.4e-108 394.8 225 88.0
AL8G27480 Arabidopsis lyrata HOM05D006544 ORTHO05D008757 5.2e-101 371.3 225 85.8
Carub.0008s1316 Capsella rubella HOM05D006544 ORTHO05D008757 4.8e-99 364.8 222 84.2
Thhalv10014610m.g Eutrema salsugineum HOM05D006544 ORTHO05D008757 4.8e-99 364.8 225 84.9
AT5G52970 Arabidopsis thaliana HOM05D006544 ORTHO05D008757 1.8e-98 362.8 225 84.0
CARHR265950 Cardamine hirsuta HOM05D006544 ORTHO05D008757 1.6e-97 359.8 224 82.6
Aa31LG1G21780 Aethionema arabicum HOM05D006544 ORTHO05D008757 4.7e-94 348.2 224 81.2
THA.LOC104816347 Tarenaya hassleriana HOM05D006544 ORTHO05D008757 8.3e-91 337.4 223 77.6
Duzib093G0756 Durio zibethinus HOM05D006544 ORTHO05D008757 2.3e-88 329.3 219 76.3
Ciclev10012670m.g Citrus clementina HOM05D006544 ORTHO05D008757 2.9e-88 328.9 211 76.3
Thecc.05G065700 Theobroma cacao HOM05D006544 ORTHO05D008757 4.3e-87 325.1 200 80.5
Potri.016G092300 Populus trichocarpa HOM05D006544 ORTHO05D008757 5.6e-87 324.7 181 86.7
Dinv37314 Davidia involucrata HOM05D006544 ORTHO05D008757 6.1e-86 321.2 226 72.1
Solyc10g084040.2 Solanum lycopersicum HOM05D006544 ORTHO05D008757 1.0e-85 320.5 222 75.2
MD12G1113500 Malus domestica HOM05D006544 ORTHO05D008757 1.8e-85 319.7 199 80.4
RcHm_v2.0_Chr3g0470171 Rosa chinensis HOM05D006544 ORTHO05D008757 2.3e-85 319.3 223 72.2
PSO339G0933 Papaver somniferum HOM05D006544 ORTHO05D008757 4.0e-85 318.5 221 70.6
PGSC0003DMG400010472 Solanum tuberosum HOM05D006544 ORTHO05D008757 4.0e-85 318.5 178 87.6
TWI74G1602 Tripterygium wilfordii HOM05D006544 ORTHO05D008757 1.2e-84 317.0 226 72.1
Sopen10g033470 Solanum pennellii HOM05D006544 ORTHO05D008757 1.5e-84 316.6 222 74.8
Sed0018427 Sechium edule HOM05D006544 ORTHO05D008757 2.6e-84 315.8 210 75.7
CiPaw.09G172700 Carya illinoinensis HOM05D006544 ORTHO05D008757 3.4e-84 315.5 174 86.8
Nitab4.5_0000063g0030 Nicotiana tabacum HOM05D006544 ORTHO05D008757 1.7e-83 313.2 226 73.0
HanXRQChr13g0401051 Helianthus annuus HOM05D006544 ORTHO05D008757 2.2e-83 312.8 202 78.2
Lj5g0006333 Lotus japonicus HOM05D006544 ORTHO05D008757 2.2e-83 312.8 212 72.6
TAR636G3123 Trochodendron aralioides HOM05D006544 ORTHO05D008757 2.2e-83 312.8 195 78.5
Gohir.A09G147100 Gossypium hirsutum HOM05D006544 ORTHO05D008757 2.9e-83 312.4 205 78.0
QL07p043583 Quercus lobata HOM05D006544 ORTHO05D008757 2.9e-83 312.4 181 84.5
CAN.G1169.17 Capsicum annuum HOM05D006544 ORTHO05D008757 3.7e-83 312.0 228 71.9
ClCG04G009280 Citrullus lanatus HOM05D006544 ORTHO05D008757 8.3e-83 310.8 187 82.4
CsaV3_6G039870 Cucumis sativus L. HOM05D006544 ORTHO05D008757 1.4e-82 310.1 220 74.5
PSO801G0526 Papaver somniferum HOM05D006544 ORTHO05D008757 3.2e-82 308.9 182 81.9
MELO3C024463.2 Cucumis melo HOM05D006544 ORTHO05D008757 5.4e-82 308.1 173 86.1
DCAR_020819 Daucus carota HOM05D006544 ORTHO05D008757 5.4e-82 308.1 224 71.9
FvH4_6g16320 Fragaria vesca HOM05D006544 ORTHO05D008757 5.4e-82 308.1 181 82.9
Glyma.10G056700 Glycine max HOM05D006544 ORTHO05D008757 5.4e-82 308.1 225 68.9
Gohir.D09G142700 Gossypium hirsutum HOM05D006544 ORTHO05D008757 7.0e-82 307.8 205 76.6
PGR004G0128 Punica granatum HOM05D006544 ORTHO05D008757 9.2e-82 307.4 231 68.0
Actinidia28904 Actinidia chinensis HOM05D006544 ORTHO05D008757 1.6e-81 306.6 206 74.8
ECA233G4064 Erigeron canadensis HOM05D006544 ORTHO05D008757 2.0e-81 306.2 222 72.1
GSVIVG01025731001 Vitis vinifera HOM05D006544 ORTHO05D008757 2.7e-81 305.8 209 73.2
Manes.09G066600 Manihot esculenta HOM05D006544 ORTHO05D008757 4.6e-81 305.1 181 81.2
Eucgr.A01683 Eucalyptus grandis HOM05D006544 ORTHO05D008757 1.0e-80 303.9 195 77.9
Gorai.006G164200 Gossypium raimondii HOM05D006544 ORTHO05D008757 1.0e-80 303.9 185 81.6
Cfa017605 Carpinus fangiana HOM05D006544 ORTHO05D008757 1.3e-80 303.5 185 81.1
FAN09G3810 Fragaria x ananassa HOM05D006544 ORTHO05D008757 1.3e-80 303.5 226 72.1
FAN05G5519 Fragaria x ananassa HOM05D006544 ORTHO05D008757 3.0e-80 302.4 190 79.5
MBI18_g04983_MAGBIO Magnolia biondii HOM05D006544 ORTHO05D008757 3.0e-80 302.4 183 79.2
Phvul.007G219800 Phaseolus vulgaris HOM05D006544 ORTHO05D008757 5.0e-80 301.6 173 81.5
SGA_v2.0_scaffold224G42946 Striga asiatica HOM05D006544 ORTHO05D008757 6.6e-80 301.2 187 78.1
arahy.Tifrunner.gnm1.ann1.4P9CL0 Arachis hypogaea HOM05D006544 ORTHO05D008757 8.6e-80 300.8 224 66.1
arahy.Tifrunner.gnm1.ann1.8Z8BZM Arachis hypogaea HOM05D006544 ORTHO05D008757 8.6e-80 300.8 224 66.1
Lalb_Chr06g0171711 Lupinus albus HOM05D006544 ORTHO05D008757 8.6e-80 300.8 197 74.6
COL.COLO4_26969 Corchorus olitorius HOM05D006544 ORTHO05D008757 1.1e-79 300.4 227 70.0
Nn2g11585 Nelumbo nucifera HOM05D006544 ORTHO05D008757 1.5e-79 300.1 198 75.8
Psat6g072960 Pisum sativum HOM05D006544 ORTHO05D008757 1.5e-79 300.1 228 67.5
Aqoxy2G01774 Aquilegia oxysepala HOM05D006544 ORTHO05D008757 1.9e-79 299.7 228 70.2
Lsat_1_v5_gn_6_25121 Lactuca sativa HOM05D006544 ORTHO05D008757 2.5e-79 299.3 210 72.4
Medtr1g063350 Medicago truncatula HOM05D006544 ORTHO05D008757 3.3e-79 298.9 217 69.6
Sc02g0001640 Simmondsia chinensis HOM05D006544 ORTHO05D008757 4.3e-79 298.5 191 78.0
Nitab4.5_0010279g0020 Nicotiana tabacum HOM05D006544 ORTHO05D008757 5.6e-79 298.1 253 64.4
VMungo0720G1694 Vigna mungo HOM05D006544 ORTHO05D008757 1.2e-78 297.0 172 82.0
Peaxi162Scf00311g00059 Petunia axillaris HOM05D006544 ORTHO05D008757 1.6e-78 296.6 243 66.3
EL10Ac7g16625 Beta vulgaris HOM05D006544 ORTHO05D008757 2.8e-78 295.8 204 72.1
Ca_11495_v3 Cicer arietinum L. HOM05D006544 ORTHO05D008757 4.7e-78 295.0 227 64.8
CANSAT80G1747 Cannabis sativa HOM05D006544 ORTHO05D008757 1.0e-77 293.9 197 73.6
SalBow5G2848 Salvia bowleyana HOM05D006544 ORTHO05D008757 3.1e-77 292.4 180 77.2
TPR.G11258 Trifolium pratense HOM05D006544 ORTHO05D008757 3.1e-77 292.4 195 73.8
Cc06_g04210 Coffea canephora HOM05D006544 ORTHO05D008757 4.0e-77 292.0 180 78.3
Oeu016983.1 Olea europaea HOM05D006544 ORTHO05D008757 5.2e-77 291.6 206 71.8
Migut.L01701 Erythranthe guttata HOM05D006544 ORTHO05D008757 1.2e-76 290.4 174 79.3
unitig_578.g16041 Utricularia gibba HOM05D006544 ORTHO05D008757 2.0e-76 289.7 180 77.2
ATR1093G019 Amborella trichopoda HOM05D006544 ORTHO05D008757 4.4e-76 288.5 206 70.4
MSTRG.10320 Avicennia marina HOM05D006544 ORTHO05D008757 1.3e-75 287.0 182 75.3
CDE09G0170 Ceratophyllum demersum HOM05D006544 ORTHO05D008757 2.9e-75 285.8 181 73.5
vmacro07290 Vaccinium macrocarpon HOM05D006544 ORTHO05D008757 1.4e-74 283.5 162 84.6
Lj2A122G33 Lonicera japonica HOM05D006544 ORTHO05D008757 3.2e-74 282.3 155 85.8
HPP92_009890 Vanilla planifolia HOM05D006544 ORTHO05D008757 3.2e-74 282.3 191 73.3
Sabra16G0097900 Salix brachista HOM05D006544 ORTHO05D008757 5.4e-74 281.6 275 57.5
FAN14G3080 Fragaria x ananassa HOM05D006544 ORTHO05D008757 1.6e-73 280.0 183 77.0
AUR62042496 Chenopodium quinoa HOM05D006544 ORTHO05D008757 2.3e-72 276.2 205 69.3
Prupe.6G232400 Prunus persica HOM05D006544 ORTHO05D008757 3.0e-72 275.8 168 82.7
AUR62040358 Chenopodium quinoa HOM05D006544 ORTHO05D008757 8.6e-72 274.2 159 82.4
Ah.15g092510 Amaranthus hybridus HOM05D006544 ORTHO05D008757 5.6e-71 271.6 155 82.6
SEGI_38453 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 5.6e-71 271.6 186 70.4
Zm00001eb088350 Zea mays HOM05D006544 ORTHO05D008757 1.5e-68 263.5 188 68.1
Pp3c13_11800 Physcomitrium patens HOM05D006544 ORTHO05D008757 2.1e-65 253.1 167 73.1
Mapoly0064s0090 Marchantia polymorpha HOM05D006544 ORTHO05D008757 6.0e-65 251.5 171 69.0
Rhsim03G0092100 Rhododendron simsii HOM05D006544 ORTHO05D008757 1.0e-64 250.8 236 57.6
SMO118G0079 Selaginella moellendorffii HOM05D006544 ORTHO05D008757 9.5e-63 244.2 145 77.2
AagrBONN_evm.TU.Sc2ySwM_228.4577 Anthoceros agrestis HOM05D006544 ORTHO05D008757 1.3e-59 233.8 183 67.2
Cpa.g.sc54.75 Carica papaya HOM05D006544 ORTHO05D008757 2.7e-57 226.1 118 89.0
Cre15.g636050 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D008757 1.7e-56 223.4 163 66.3
CBR_g11899 Chara braunii HOM05D006544 ORTHO05D008757 1.1e-55 220.7 174 60.9
SEGI_20985 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 2.8e-54 216.1 120 80.0
AagrBONN_evm.TU.Sc2ySwM_344.816 Anthoceros agrestis HOM05D006544 ORTHO05D008757 1.1e-50 204.1 120 75.8
PRCOL_00002491 Prasinoderma coloniale HOM05D006544 ORTHO05D008757 3.0e-48 196.1 201 51.2
MCO09G250 Micromonas commoda HOM05D006544 ORTHO05D008757 8.7e-48 194.5 187 50.8
Os07g0534000 Oryza sativa ssp. japonica HOM05D006544 ORTHO05D008757 2.1e-41 173.3 118 66.9
Cpa.g.sc4277.1 Carica papaya HOM05D006544 ORTHO05D008757 6.0e-41 171.8 115 75.7
Cpa.g.sc54.73 Carica papaya HOM05D006544 ORTHO05D008757 6.0e-41 171.8 115 75.7
Lj5g0024591 Lotus japonicus HOM05D006544 ORTHO05D008757 2.3e-40 169.9 94 83.0
CSS0000889 Camellia sinensis var. sinensis HOM05D006544 ORTHO05D008757 1.6e-38 163.7 177 53.1
Medtr5g037320 Medicago truncatula HOM05D006544 ORTHO05D008757 4.5e-28 129.0 114 63.2
HPP92_009894 Vanilla planifolia HOM05D006544 ORTHO05D008757 1.2e-25 120.9 65 81.5
Hund20313 Selenicereus undatus HOM05D006544 ORTHO05D008757 5.7e-23 112.1 73 79.5
CBR_g20266 Chara braunii HOM05D006544 ORTHO05D021234 3.2e-18 96.3 134 36.6
AagrBONN_evm.TU.Sc2ySwM_368.258 Anthoceros agrestis HOM05D006544 ORTHO05D021234 5.5e-18 95.5 144 34.7
Nn2g13777 Nelumbo nucifera HOM05D006544 ORTHO05D008757 2.2e-14 83.6 63 68.3
SEGI_36386 Sequoiadendron giganteum HOM05D006544 ORTHO05D021234 2.8e-14 83.2 129 33.3
Cpa.g.sc54.74 Carica papaya HOM05D006544 ORTHO05D008757 1.8e-13 80.5 103 53.4
SalBow5G0971 Salvia bowleyana HOM05D008540 ORTHO05D009454 9.0e-13 78.2 146 39.7
HPP92_009893 Vanilla planifolia HOM05D006544 ORTHO05D008757 7.7e-12 75.1 72 62.5
Cre03.g154600 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D021234 5.7e-07 58.9 162 24.7
MCO12G278 Micromonas commoda HOM05D006544 ORTHO05D021234 5.7e-07 58.9 123 26.8


User provided reference genes

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