Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 1.1e-262 909.4 485 100.0
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 2.7e-227 792.0 505 85.0
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 8.0e-224 780.4 504 85.5
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 6.8e-223 777.3 504 85.5
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 2.2e-221 772.3 504 84.9
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 5.4e-220 767.7 506 82.8
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 5.6e-217 757.7 507 79.1
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 4.7e-216 754.6 510 80.2
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 1.4e-215 753.1 525 79.6
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 6.8e-215 750.7 509 78.4
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 8.9e-215 750.4 525 79.2
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 2.0e-214 749.2 507 76.9
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 3.2e-212 741.9 525 78.3
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 3.2e-212 741.9 525 78.3
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 9.2e-212 740.3 541 76.9
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 9.8e-206 720.3 506 77.9
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 8.1e-200 700.7 502 72.5
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 4.3e-169 598.6 464 67.0
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 5.6e-169 598.2 464 67.0
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 1.6e-168 596.7 493 64.5
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 1.6e-168 596.7 459 66.4
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 1.8e-167 593.2 482 64.9
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 1.8e-167 593.2 482 64.9
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 1.8e-167 593.2 498 63.1
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.2e-166 590.5 508 61.2
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 2.0e-166 589.7 508 61.2
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 2.6e-166 589.3 468 66.0
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 4.5e-166 588.6 464 65.7
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 4.5e-166 588.6 513 62.2
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 1.7e-165 586.6 481 64.2
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 3.8e-165 585.5 464 65.9
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 4.9e-165 585.1 509 61.1
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 1.1e-164 583.9 465 65.6
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 7.1e-164 581.3 467 64.5
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 1.6e-163 580.1 455 65.1
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 1.6e-163 580.1 452 67.7
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 4.6e-163 578.6 491 63.1
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 6.0e-163 578.2 490 63.7
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.3e-162 577.0 463 65.2
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 2.3e-162 576.2 490 63.7
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 6.7e-162 574.7 507 60.4
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 8.7e-162 574.3 454 65.4
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 8.7e-162 574.3 452 65.7
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-160 570.5 512 60.5
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-160 570.5 509 60.5
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.6e-160 570.1 453 68.2
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 2.1e-160 569.7 506 60.1
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.1e-160 569.7 509 60.5
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 2.8e-160 569.3 482 62.0
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 2.8e-160 569.3 502 60.0
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 6.2e-160 568.2 511 59.9
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.4e-159 567.0 469 62.9
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 1.8e-159 566.6 451 64.7
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 3.1e-159 565.8 508 61.4
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 6.9e-159 564.7 465 63.4
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 6.9e-159 564.7 475 62.7
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.5e-158 563.5 523 59.3
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.0e-158 563.1 465 63.2
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 5.8e-158 561.6 463 65.9
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 7.6e-158 561.2 452 67.0
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 1.3e-157 560.5 466 65.0
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 2.9e-157 559.3 475 63.2
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 4.9e-157 558.5 464 63.4
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 8.4e-157 557.8 495 61.0
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 1.1e-156 557.4 494 61.1
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.4e-156 557.0 506 58.3
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 2.1e-155 553.1 433 65.8
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 4.6e-155 552.0 513 59.1
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 4.6e-155 552.0 563 53.6
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 6.0e-155 551.6 491 60.9
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 7.9e-155 551.2 489 62.0
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 1.9e-153 546.6 472 65.5
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 1.9e-153 546.6 483 60.2
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 5.7e-153 545.0 479 63.9
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 7.4e-153 544.7 433 65.1
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 1.3e-152 543.9 463 63.1
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 5.3e-151 538.5 543 54.3
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.5e-150 537.0 504 56.9
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 1.5e-150 537.0 501 60.3
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 5.0e-149 531.9 433 65.4
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 1.2e-147 527.3 487 56.3
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 3.0e-146 522.7 457 60.4
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 4.3e-145 518.8 468 59.0
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 5.3e-143 511.9 496 60.1
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 9.1e-143 511.1 504 56.3
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 1.5e-142 510.4 404 65.1
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 2.6e-142 509.6 455 57.6
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 6.5e-141 505.0 455 56.7
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 7.9e-139 498.0 478 57.9
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.1e-137 494.2 554 54.2
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 4.8e-136 488.8 449 61.7
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 1.1e-135 487.6 402 62.7
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 5.3e-135 485.3 465 55.5
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 6.9e-135 485.0 409 60.6
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 2.9e-133 479.6 564 51.2
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 1.1e-132 477.6 460 55.7
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 8.0e-131 471.5 446 57.0
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 4.4e-129 465.7 391 61.1
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 5.7e-129 465.3 392 61.5
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 4.8e-128 462.2 446 58.7
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 1.1e-127 461.1 741 40.4
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 1.5e-124 450.7 404 58.9
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 4.0e-122 442.6 453 54.3
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 8.2e-120 434.9 340 68.2
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 9.1e-119 431.4 420 56.9
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 1.6e-115 420.6 405 56.5
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 2.3e-114 416.8 394 59.1
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 3.0e-114 416.4 451 51.7
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 4.0e-114 416.0 425 54.8
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 5.7e-113 412.1 460 48.5
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 7.7e-110 401.7 327 69.4
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 2.0e-105 387.1 560 42.7
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 4.4e-105 386.0 484 46.5
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 5.2e-98 362.5 472 43.9
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 9.8e-97 358.2 443 49.0
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 1.4e-82 311.2 340 53.2
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 1.7e-80 304.3 214 69.2
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 1.1e-76 291.6 159 94.3
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 7.3e-76 288.9 295 52.2
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 3.8e-72 276.6 439 38.5
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 2.8e-67 260.4 437 38.0
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 5.3e-66 256.1 531 33.3
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 7.1e-63 245.7 363 47.1
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 3.9e-61 240.0 275 51.6
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 2.3e-53 214.2 208 59.1
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 4.3e-52 209.9 187 61.5
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 7.1e-47 192.6 263 43.3
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.9e-45 186.8 248 46.4
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 1.9e-44 184.5 249 44.6
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 1.5e-41 174.9 416 35.1
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 3.9e-37 160.2 249 45.0
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 7.4e-36 156.0 116 62.1
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 2.2e-35 154.5 143 60.1
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 6.3e-35 152.9 121 66.9
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 1.1e-34 152.1 234 44.0
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.0e-33 147.9 113 69.9
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.6e-33 147.5 245 41.2
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 4.5e-33 146.7 131 58.0
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.9e-33 146.4 234 42.3
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.7e-32 144.8 113 68.1
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.2e-32 144.4 99 73.7
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 1.2e-30 138.7 97 67.0
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 1.7e-27 128.3 116 56.9
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.7e-27 128.3 158 46.2
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 5.9e-25 119.8 140 47.9
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.7e-24 118.2 96 59.4
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 3.8e-24 117.1 84 64.3
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 1.4e-21 108.6 115 53.0
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 1.4e-21 108.6 79 67.1
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 1.1e-20 105.5 227 36.1
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 2.6e-20 104.4 222 34.7
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 2.6e-20 104.4 237 34.2
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 4.8e-19 100.1 77 71.4
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 8.5e-16 89.4 102 54.9
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 8.5e-16 89.4 94 46.8
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 8.8e-13 79.3 72 54.2
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 3.3e-12 77.4 61 59.0
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 4.4e-12 77.0 84 54.8
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 3.7e-11 73.9 136 32.4
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 4.8e-11 73.6 92 42.4
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 8.2e-11 72.8 38 94.7
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 8.2e-11 72.8 38 94.7
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 8.2e-11 72.8 38 94.7
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 8.2e-11 72.8 38 94.7
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 1.1e-10 72.4 43 90.7
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 2.6e-09 67.8 45 77.8
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 2.6e-09 67.8 45 77.8
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 2.6e-09 67.8 45 77.8


User provided reference genes

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