Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21792 Brassica carinata HOM05D007309 ORTHO05D010099 8.4e-229 796.6 378 100.0
BraA02t04794Z Brassica rapa HOM05D007309 ORTHO05D010099 6.8e-170 600.9 374 80.2
BcaC03g12970 Brassica carinata HOM05D007309 ORTHO05D010099 3.3e-156 555.4 374 74.9
C02p01630 Brassica napus HOM05D007309 ORTHO05D010099 3.6e-155 552.0 377 74.3
BcaB05g21772 Brassica carinata HOM05D007309 ORTHO05D010099 3.5e-126 455.7 380 64.5
BcaC03g12956 Brassica carinata HOM05D007309 ORTHO05D010099 3.1e-122 442.6 379 62.0
C02p01790 Brassica napus HOM05D007309 ORTHO05D010099 4.0e-122 442.2 382 61.8
BolC2t06135H Brassica oleracea HOM05D007309 ORTHO05D010099 6.9e-122 441.4 382 61.5
BcaB05g21775 Brassica carinata HOM05D007309 ORTHO05D010099 3.5e-118 429.1 385 59.5
BraA02t04799Z Brassica rapa HOM05D007309 ORTHO05D010099 3.6e-115 419.1 382 60.2
C02p01800 Brassica napus HOM05D007309 ORTHO05D010099 5.8e-113 411.8 413 56.9
C02p01750 Brassica napus HOM05D007309 ORTHO05D010099 4.2e-111 405.6 377 58.4
C02p01340 Brassica napus HOM05D007309 ORTHO05D010099 1.6e-107 393.7 378 58.2
C02p01480 Brassica napus HOM05D007309 ORTHO05D010099 2.1e-107 393.3 378 56.9
BcaC03g12986 Brassica carinata HOM05D007309 ORTHO05D010099 1.4e-106 390.6 378 57.7
BcaC03g12963 Brassica carinata HOM05D007309 ORTHO05D010099 5.3e-106 388.7 378 56.9
BcaC03g12960 Brassica carinata HOM05D007309 ORTHO05D010099 6.5e-104 381.7 373 56.8
BcaC03g12961 Brassica carinata HOM05D007309 ORTHO05D010099 1.4e-103 380.6 377 56.2
C02p01720 Brassica napus HOM05D007309 ORTHO05D010099 2.1e-102 376.7 393 54.5
BcaC03g12991 Brassica carinata HOM05D007309 ORTHO05D010099 1.9e-100 370.2 384 56.2
BolC2t06110H Brassica oleracea HOM05D007309 ORTHO05D010099 4.3e-100 369.0 431 49.7
BcaC03g12955 Brassica carinata HOM05D007309 ORTHO05D010099 4.8e-99 365.5 385 55.6
BcaB05g21785 Brassica carinata HOM05D007309 ORTHO05D010099 5.0e-96 355.5 298 62.8
BcaC03g12957 Brassica carinata HOM05D007309 ORTHO05D010099 2.4e-90 336.7 378 51.6
C02p01780 Brassica napus HOM05D007309 ORTHO05D010099 4.5e-89 332.4 378 51.3
C02p01380 Brassica napus HOM05D007309 ORTHO05D010099 1.8e-82 310.5 302 57.6
BolC2t06134H Brassica oleracea HOM05D007309 ORTHO05D010099 4.1e-82 309.3 326 53.7
BcaC03g17362 Brassica carinata HOM05D007309 ORTHO05D032575 1.9e-79 300.4 400 46.0
C02p53010 Brassica napus HOM05D007309 ORTHO05D032575 1.9e-79 300.4 400 46.0
BcaC03g12974 Brassica carinata HOM05D007309 ORTHO05D006097 1.1e-74 284.6 196 73.0
BcaC09g51621 Brassica carinata HOM05D007309 ORTHO05D010099 2.0e-73 280.4 398 44.2
A01p09730 Brassica napus HOM05D007309 ORTHO05D010099 1.0e-72 278.1 399 43.9
BraA01t00916Z Brassica rapa HOM05D007309 ORTHO05D010099 5.5e-71 272.3 402 43.0
BcaC03g12971 Brassica carinata HOM05D007309 ORTHO05D010099 2.1e-70 270.4 371 45.8
BolC2t11370H Brassica oleracea HOM05D007309 ORTHO05D032575 4.7e-70 269.2 390 44.1
BcaB05g21746 Brassica carinata HOM05D007309 ORTHO05D010099 5.2e-69 265.8 377 45.1
A01p10480 Brassica napus HOM05D007309 ORTHO05D010099 6.7e-69 265.4 396 42.7
C02p01710 Brassica napus HOM05D007309 ORTHO05D010099 8.8e-69 265.0 384 44.5
BraA01t00993Z Brassica rapa HOM05D007309 ORTHO05D010099 7.5e-68 261.9 410 42.0
BolC2t06164H Brassica oleracea HOM05D007309 ORTHO05D021684 6.3e-67 258.8 386 43.3
BcaC03g13128 Brassica carinata HOM05D007309 ORTHO05D021684 1.1e-66 258.1 386 43.0
C02p02060 Brassica napus HOM05D007309 ORTHO05D021684 1.4e-66 257.7 387 43.4
BolC2t06133H Brassica oleracea HOM05D007309 ORTHO05D021684 2.4e-66 256.9 384 43.5
BcaC03g13124 Brassica carinata HOM05D007309 ORTHO05D021684 1.6e-65 254.2 386 42.7
BolC2t06128H Brassica oleracea HOM05D007309 ORTHO05D010099 7.7e-65 251.9 271 55.0
BolC2t06167H Brassica oleracea HOM05D007309 ORTHO05D021684 1.3e-64 251.1 374 43.3
BolC2t06111H Brassica oleracea HOM05D007309 ORTHO05D010099 1.8e-61 240.7 296 49.0
BcaB05g21793 Brassica carinata HOM05D007309 ORTHO05D010099 5.2e-61 239.2 152 80.3
BolC2t07109H Brassica oleracea HOM05D007309 ORTHO05D040036 1.5e-60 237.7 394 38.6
C02p01200 Brassica napus HOM05D007309 ORTHO05D010099 7.5e-60 235.3 178 69.7
C02p01460 Brassica napus HOM05D007309 ORTHO05D010099 2.4e-58 230.3 179 68.2
BcaC05g26633 Brassica carinata HOM05D007309 ORTHO05D010099 3.1e-58 229.9 400 39.8
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 5.0e-56 222.6 388 37.1
BcaC06g31633 Brassica carinata HOM05D007309 ORTHO05D010099 8.3e-51 205.3 290 45.9
C02p01240 Brassica napus HOM05D007309 ORTHO05D010099 4.1e-50 203.0 216 52.3
Thhalv10014127m.g Eutrema salsugineum HOM05D007309 ORTHO05D010099 7.3e-39 165.6 269 39.8
BolC2t06143H Brassica oleracea HOM05D007309 ORTHO05D010099 1.1e-37 161.8 151 58.3
BolC1t01103H Brassica oleracea HOM05D007309 ORTHO05D010099 1.5e-31 141.4 144 56.2
A04p22460 Brassica napus HOM05D007309 ORTHO05D010099 3.3e-31 140.2 182 42.3
AL5G13820 Arabidopsis lyrata HOM05D007309 ORTHO05D010099 6.2e-30 136.0 181 43.1
BcaC03g12967 Brassica carinata HOM05D003180 ORTHO05D014840 4.0e-29 133.3 357 31.1
BolC1t01104H Brassica oleracea HOM05D007309 ORTHO05D010099 1.2e-28 131.7 264 37.5
BcaC01g05143 Brassica carinata HOM05D007309 ORTHO05D031751 1.5e-28 131.3 193 42.5
Carub.0004s1446 Capsella rubella HOM05D007309 ORTHO05D015909 3.4e-28 130.2 373 31.1
C01p11350 Brassica napus HOM05D007309 ORTHO05D010099 7.5e-28 129.0 261 37.5
BcaC03g12964 Brassica carinata HOM05D007309 ORTHO05D010099 2.2e-27 127.5 214 41.1
AL4G34490 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 4.9e-27 126.3 353 32.9
BraA09t38661Z Brassica rapa HOM05D007309 ORTHO05D010099 8.3e-27 125.6 180 38.3
Carub.0004s1451 Capsella rubella HOM05D007309 ORTHO05D015909 1.1e-26 125.2 373 30.6
Carub.0004s1897 Capsella rubella HOM05D007309 ORTHO05D015909 3.2e-26 123.6 422 28.2
C03p38220 Brassica napus HOM05D007309 ORTHO05D032970 1.2e-25 121.7 112 59.8
AL4G19130 Arabidopsis lyrata HOM05D007309 ORTHO05D010099 1.6e-25 121.3 174 41.4
BolC4t27378H Brassica oleracea HOM05D007309 ORTHO05D010099 7.8e-25 119.0 180 37.8
AL4G33320 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 1.0e-24 118.6 391 27.9
C04p58600 Brassica napus HOM05D007309 ORTHO05D010099 1.0e-24 118.6 180 38.3
AL4G34290 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 1.1e-23 115.2 373 30.6
BolC3t16103H Brassica oleracea HOM05D007309 ORTHO05D032970 5.6e-23 112.8 121 55.4
C02p01450 Brassica napus HOM05D007309 ORTHO05D010099 9.5e-23 112.1 134 45.5
C02p01680 Brassica napus HOM05D007309 ORTHO05D014840 5.8e-20 102.8 176 37.5
C02p01410 Brassica napus HOM05D007309 ORTHO05D010099 2.4e-18 97.4 85 56.5
AL4G34570 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 4.1e-18 96.7 309 27.2
BraA04t16224Z Brassica rapa HOM05D010965 ORTHO05D016023 1.6e-17 94.7 364 26.1
BcaB05g21782 Brassica carinata HOM05D007309 ORTHO05D010099 2.1e-17 94.4 62 71.0
AL5G13790 Arabidopsis lyrata HOM05D007309 ORTHO05D014840 3.5e-17 93.6 174 36.2
BcaC01g06784 Brassica carinata HOM05D007309 ORTHO05D032970 2.3e-16 90.9 86 55.8
A04p04180 Brassica napus HOM05D010965 ORTHO05D024278 1.1e-15 88.6 349 25.2
C02p01690 Brassica napus HOM05D007309 ORTHO05D010099 1.5e-15 88.2 137 38.7
AL4G19150 Arabidopsis lyrata HOM05D007309 ORTHO05D014840 9.6e-15 85.5 174 34.5
BcaC02g09040 Brassica carinata HOM05D010965 ORTHO05D016023 2.8e-14 84.0 349 25.5
BolC2t06144H Brassica oleracea HOM05D007309 ORTHO05D027345 2.8e-14 84.0 146 37.7
AL4G33400 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 4.7e-14 83.2 363 25.9
BolC2t06136H Brassica oleracea HOM05D007309 ORTHO05D010099 6.2e-14 82.8 60 63.3
BolC4t25347H Brassica oleracea HOM05D010965 ORTHO05D016023 6.2e-14 82.8 364 25.3
Thhalv10014870m.g Eutrema salsugineum HOM05D007309 ORTHO05D014840 2.6e-12 77.4 161 37.3
AL9U11090 Arabidopsis lyrata HOM05D007309 ORTHO05D014840 3.4e-12 77.0 160 33.1
C04p37700 Brassica napus HOM05D010965 ORTHO05D016023 2.9e-11 73.9 310 26.1
BcaNung05912 Brassica carinata HOM05D007309 ORTHO05D010099 6.4e-11 72.8 83 47.0
C04p36520 Brassica napus HOM05D010965 ORTHO05D024278 6.4e-11 72.8 340 25.6
BolC4t25144H Brassica oleracea HOM05D010965 ORTHO05D024278 6.4e-11 72.8 340 25.6
BcaC02g08085 Brassica carinata HOM05D000075 ORTHO05D014840 8.4e-11 72.4 68 50.0
C02p01280 Brassica napus HOM05D007309 ORTHO05D010099 8.4e-11 72.4 63 58.7
C02p01290 Brassica napus HOM05D007309 ORTHO05D010099 1.1e-10 72.0 65 56.9
Thhalv10027969m.g Eutrema salsugineum HOM05D001456 ORTHO05D011781 5.4e-10 69.7 168 29.2
BcaB02g08391 Brassica carinata HOM05D000018 ORTHO05D016023 1.2e-09 68.6 143 30.8
A04p22450 Brassica napus HOM05D000075 ORTHO05D014840 1.2e-09 68.6 138 32.6
BcaB02g08395 Brassica carinata HOM05D010965 ORTHO05D016023 1.6e-09 68.2 341 23.2
BraA01t00917Z Brassica rapa HOM05D007309 ORTHO05D027345 2.3e-08 64.3 78 46.2
C07p13270 Brassica napus HOM05D023794 ORTHO05D028264 5.1e-08 63.2 170 28.8
BraA09t40689Z Brassica rapa HOM05D001456 ORTHO05D011781 5.1e-08 63.2 114 31.6
A01p09740 Brassica napus HOM05D007309 ORTHO05D027345 6.6e-08 62.8 74 45.9
A05p24100 Brassica napus HOM05D000075 ORTHO05D014840 8.7e-08 62.4 171 30.4
A04p05130 Brassica napus HOM05D010965 ORTHO05D016023 1.1e-07 62.0 255 25.9
A09p52590 Brassica napus HOM05D001456 ORTHO05D011781 1.5e-07 61.6 114 30.7
C08p35340 Brassica napus HOM05D001456 ORTHO05D011781 3.3e-07 60.5 120 29.2
BolC8t51127H Brassica oleracea HOM05D001456 ORTHO05D011781 3.3e-07 60.5 120 29.2
BraA04t16134Z Brassica rapa HOM05D010965 ORTHO05D024278 3.3e-07 60.5 152 28.3
CDE09G1275 Ceratophyllum demersum HOM05D001456 ORTHO05D002799 4.3e-07 60.1 148 29.7
Potri.013G003200 Populus trichocarpa HOM05D001456 ORTHO05D002799 4.3e-07 60.1 142 29.6
AL5G41570 Arabidopsis lyrata HOM05D001456 ORTHO05D011865 5.6e-07 59.7 152 32.2
ATR0796G271 Amborella trichopoda HOM05D001456 ORTHO05D002799 7.3e-07 59.3 155 29.7
Actinidia21350 Actinidia chinensis HOM05D001456 ORTHO05D002799 9.6e-07 58.9 147 28.6
BcaB02g08393 Brassica carinata HOM05D010965 ORTHO05D016023 9.6e-07 58.9 340 22.4
BraA05t21290Z Brassica rapa HOM05D000075 ORTHO05D014840 9.6e-07 58.9 171 29.8
BraA10t45076Z Brassica rapa HOM05D001260 ORTHO05D002424 9.6e-07 58.9 145 29.7
CANSAT25G0904 Cannabis sativa HOM05D001456 ORTHO05D002799 9.6e-07 58.9 146 28.8
Carub.0001s3469 Capsella rubella HOM05D001456 ORTHO05D010099 9.6e-07 58.9 133 30.8
AUR62030141 Chenopodium quinoa HOM05D001456 ORTHO05D002799 9.6e-07 58.9 118 28.8
AL3G49050 Arabidopsis lyrata HOM05D025464 ORTHO05D015909 1.3e-06 58.5 159 30.8
BcaC02g09794 Brassica carinata HOM05D010965 ORTHO05D024278 2.1e-06 57.8 102 36.3
AUR62002684 Chenopodium quinoa HOM05D001456 ORTHO05D002799 2.1e-06 57.8 163 27.0
A09p52620 Brassica napus HOM05D001456 ORTHO05D011781 2.8e-06 57.4 116 31.0
BraA09t40691Z Brassica rapa HOM05D001456 ORTHO05D011781 2.8e-06 57.4 117 30.8
Thhalv10006264m.g Eutrema salsugineum HOM05D001456 ORTHO05D011781 2.8e-06 57.4 94 34.0
Nn3g21907 Nelumbo nucifera HOM05D001456 ORTHO05D002799 2.8e-06 57.4 151 26.5
Oeu044758.1 Olea europaea HOM05D001456 ORTHO05D002799 2.8e-06 57.4 159 29.6
Os07g0637200 Oryza sativa ssp. japonica HOM05D001456 ORTHO05D002799 2.8e-06 57.4 140 27.1
EL10Ac8g19630 Beta vulgaris HOM05D001456 ORTHO05D002799 3.6e-06 57.0 147 27.9
Sabra13G0002700 Salix brachista HOM05D001456 ORTHO05D002799 3.6e-06 57.0 142 28.9
SEGI_20611 Sequoiadendron giganteum HOM05D001456 ORTHO05D004886 3.6e-06 57.0 144 27.1
Sed0008463 Sechium edule HOM05D001456 ORTHO05D002799 4.8e-06 56.6 146 26.7
Potri.013G003100 Populus trichocarpa HOM05D001456 ORTHO05D002799 6.2e-06 56.2 140 28.6
TAR365G0439 Trochodendron aralioides HOM05D001456 ORTHO05D002799 6.2e-06 56.2 140 27.9
VMungo0720G0252 Vigna mungo HOM05D001456 ORTHO05D002799 6.2e-06 56.2 140 28.6
MSTRG.16424 Avicennia marina HOM05D001456 ORTHO05D002799 8.1e-06 55.8 140 27.9
Sabra13G0002600 Salix brachista HOM05D001456 ORTHO05D002799 8.1e-06 55.8 142 28.2


User provided reference genes

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