Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21777 Brassica carinata HOM05D038393 ORTHO05D039049 1.3e-45 186.0 91 100.0
C03p91180 Brassica napus HOM05D038393 ORTHO05D039049 8.7e-23 110.2 60 86.7
C08p46560 Brassica napus HOM05D038393 ORTHO05D100337 1.1e-09 66.6 34 91.2
AL5G33800 Arabidopsis lyrata HOM05D000211 ORTHO05D001901 3.0e-07 58.5 88 42.0
AT3G52990 Arabidopsis thaliana HOM05D000211 ORTHO05D001901 3.0e-07 58.5 88 42.0
Thhalv10010288m.g Eutrema salsugineum HOM05D000211 ORTHO05D001901 3.0e-07 58.5 88 42.0
BcaB01g00319 Brassica carinata HOM05D000211 ORTHO05D001901 6.7e-07 57.4 88 42.0
BcaB02g08545 Brassica carinata HOM05D000211 ORTHO05D001901 6.7e-07 57.4 88 42.0
BcaC07g39662 Brassica carinata HOM05D000211 ORTHO05D001901 6.7e-07 57.4 88 42.0
BcaC08g44619 Brassica carinata HOM05D000211 ORTHO05D001901 6.7e-07 57.4 88 42.0
A04p06510 Brassica napus HOM05D000211 ORTHO05D001901 6.7e-07 57.4 88 42.0
A07p21360 Brassica napus HOM05D000211 ORTHO05D001901 6.7e-07 57.4 88 42.0
A09p46050 Brassica napus HOM05D000211 ORTHO05D001901 6.7e-07 57.4 88 42.0
C06p20910 Brassica napus HOM05D000211 ORTHO05D001901 6.7e-07 57.4 88 42.0
C08p28300 Brassica napus HOM05D000211 ORTHO05D001901 6.7e-07 57.4 88 42.0
BolC6t37279H Brassica oleracea HOM05D000211 ORTHO05D001901 6.7e-07 57.4 88 42.0
BolC8t50439H Brassica oleracea HOM05D000211 ORTHO05D001901 6.7e-07 57.4 88 42.0
BraA04t16354Z Brassica rapa HOM05D000211 ORTHO05D001901 6.7e-07 57.4 88 42.0
BraA07t29823Z Brassica rapa HOM05D000211 ORTHO05D001901 6.7e-07 57.4 88 42.0
BraA09t40069Z Brassica rapa HOM05D000211 ORTHO05D001901 6.7e-07 57.4 88 42.0
Carub.0005s1949 Capsella rubella HOM05D000211 ORTHO05D001901 6.7e-07 57.4 88 40.9
CARHR162880 Cardamine hirsuta HOM05D000211 ORTHO05D001901 6.7e-07 57.4 88 42.0
BcaC02g09198 Brassica carinata HOM05D000211 ORTHO05D001901 8.8e-07 57.0 88 40.9
C04p39960 Brassica napus HOM05D000211 ORTHO05D001901 8.8e-07 57.0 88 40.9
BolC4t25568H Brassica oleracea HOM05D000211 ORTHO05D001901 8.8e-07 57.0 88 40.9
Aa31LG5G21790 Aethionema arabicum HOM05D000211 ORTHO05D001901 1.1e-06 56.6 88 40.9
AT2G36580 Arabidopsis thaliana HOM05D000211 ORTHO05D001901 1.5e-06 56.2 88 40.9
Carub.0004s1840 Capsella rubella HOM05D000211 ORTHO05D001901 1.5e-06 56.2 88 40.9
Thhalv10016506m.g Eutrema salsugineum HOM05D000211 ORTHO05D001901 1.5e-06 56.2 88 40.9
THA.LOC104823473 Tarenaya hassleriana HOM05D000211 ORTHO05D001901 2.6e-06 55.5 88 39.8
AL4G32750 Arabidopsis lyrata HOM05D000211 ORTHO05D001901 4.4e-06 54.7 88 39.8
CARHR130870 Cardamine hirsuta HOM05D000211 ORTHO05D001901 4.4e-06 54.7 88 39.8
CDE01G0588 Ceratophyllum demersum HOM05D000211 ORTHO05D001901 4.4e-06 54.7 88 39.8
CDE12G0926 Ceratophyllum demersum HOM05D000211 ORTHO05D001901 4.4e-06 54.7 88 39.8
Os12g0145700 Oryza sativa ssp. japonica HOM05D000211 ORTHO05D001901 4.4e-06 54.7 88 38.6
RcHm_v2.0_Chr1g0334861 Rosa chinensis HOM05D000211 ORTHO05D001901 5.7e-06 54.3 88 38.6
CSS0028501 Camellia sinensis var. sinensis HOM05D000211 ORTHO05D001901 7.4e-06 53.9 88 38.6
CSS0040459 Camellia sinensis var. sinensis HOM05D000211 ORTHO05D001901 7.4e-06 53.9 88 38.6
Sp4g18870 Schrenkiella parvula HOM05D000211 ORTHO05D001901 7.4e-06 53.9 88 39.8
THA.LOC104827491 Tarenaya hassleriana HOM05D000211 ORTHO05D001901 7.4e-06 53.9 88 38.6
Nitab4.5_0010330g0010 Nicotiana tabacum HOM05D000211 ORTHO05D001901 9.7e-06 53.5 88 38.6


User provided reference genes

Program Settings