Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21770 Brassica carinata HOM05D011214 ORTHO05D007661 2.7e-214 748.4 390 100.0
C02p01830 Brassica napus HOM05D011214 ORTHO05D007661 2.1e-174 615.9 384 86.5
BolC2t06140H Brassica oleracea HOM05D011214 ORTHO05D007661 2.0e-169 599.4 386 84.2
BcaC03g12952 Brassica carinata HOM05D011214 ORTHO05D007661 2.7e-161 572.4 386 81.9
Sp6g38560 Schrenkiella parvula HOM05D011214 ORTHO05D007661 2.1e-150 536.2 419 72.1
Thhalv10015710m.g Eutrema salsugineum HOM05D011214 ORTHO05D007661 3.6e-150 535.4 428 71.3
C09p72660 Brassica napus HOM05D011214 ORTHO05D007661 1.7e-144 516.5 417 71.7
BcaC06g32123 Brassica carinata HOM05D011214 ORTHO05D007661 3.0e-144 515.8 405 72.3
BolC9t60006H Brassica oleracea HOM05D011214 ORTHO05D007661 2.5e-143 512.7 417 71.0
BraA10t45239Z Brassica rapa HOM05D011214 ORTHO05D007661 4.7e-142 508.4 416 71.4
AT5G04190 Arabidopsis thaliana HOM05D011214 ORTHO05D007661 1.4e-141 506.9 409 70.9
CARHR209070 Cardamine hirsuta HOM05D011214 ORTHO05D007661 6.8e-141 504.6 420 69.3
A10p31950 Brassica napus HOM05D011214 ORTHO05D007661 1.2e-140 503.8 416 71.4
Carub.0006s0314 Capsella rubella HOM05D011214 ORTHO05D007661 2.2e-139 499.6 422 68.5
BcaC06g32122 Brassica carinata HOM05D011214 ORTHO05D007661 7.1e-138 494.6 391 71.6
BraA02t04803Z Brassica rapa HOM05D011214 ORTHO05D007661 1.3e-136 490.3 404 71.3
AL6G13810 Arabidopsis lyrata HOM05D011214 ORTHO05D007661 8.4e-131 471.1 403 68.2
THA.LOC104816415 Tarenaya hassleriana HOM05D011214 ORTHO05D007661 1.3e-70 271.2 435 47.8
Peaxi162Scf00575g00079 Petunia axillaris HOM05D007561 ORTHO05D007661 6.0e-28 129.4 387 37.2
Cpa.g.sc33.185 Carica papaya HOM05D007561 ORTHO05D007661 8.6e-27 125.6 458 31.2
TWI74G0078 Tripterygium wilfordii HOM05D007561 ORTHO05D007661 1.1e-26 125.2 452 32.5
TWI77G0394 Tripterygium wilfordii HOM05D007561 ORTHO05D007661 1.5e-26 124.8 446 32.1
SGA_v2.0_scaffold66G22349 Striga asiatica HOM05D007561 ORTHO05D007661 1.9e-26 124.4 358 34.4
Nitab4.5_0000613g0170 Nicotiana tabacum HOM05D007561 ORTHO05D007661 2.1e-25 120.9 441 33.1
Manes.04G066400 Manihot esculenta HOM05D007561 ORTHO05D007661 1.4e-24 118.2 472 30.9
Nitab4.5_0000811g0050 Nicotiana tabacum HOM05D007561 ORTHO05D007661 2.3e-24 117.5 447 32.7
Dinv37052 Davidia involucrata HOM05D007561 ORTHO05D007661 1.2e-23 115.2 464 31.0
GSVIVG01029894001 Vitis vinifera HOM05D007561 ORTHO05D007661 9.8e-23 112.1 319 33.2
Potri.007G074056 Populus trichocarpa HOM05D007561 ORTHO05D007661 1.7e-22 111.3 510 30.4
TAR561G0001 Trochodendron aralioides HOM05D007561 ORTHO05D007661 2.2e-22 110.9 527 31.3
Lj2A414T29 Lonicera japonica HOM05D007561 ORTHO05D007661 6.4e-22 109.4 374 33.7
Medtr7g088200 Medicago truncatula HOM05D007561 ORTHO05D007661 6.4e-22 109.4 420 32.9
SalBow6G6384 Salvia bowleyana HOM05D007561 ORTHO05D007661 6.4e-22 109.4 406 32.3
Sopen10g031840 Solanum pennellii HOM05D007561 ORTHO05D007661 8.3e-22 109.0 428 32.7
PGSC0003DMG400028120 Solanum tuberosum HOM05D007561 ORTHO05D007661 1.1e-21 108.6 442 31.7
CAN.G128.129 Capsicum annuum HOM05D007561 ORTHO05D007661 1.9e-21 107.8 433 30.3
Potri.005G090000 Populus trichocarpa HOM05D007561 ORTHO05D007661 1.9e-21 107.8 475 31.6
Solyc10g081340.1 Solanum lycopersicum HOM05D007561 ORTHO05D007661 1.9e-21 107.8 435 31.7
SalBow6G1989 Salvia bowleyana HOM05D007561 ORTHO05D007661 2.4e-21 107.5 406 32.0
Oeu020265.1 Olea europaea HOM05D007561 ORTHO05D007661 4.1e-21 106.7 489 30.5
Thecc.05G190500 Theobroma cacao HOM05D007561 ORTHO05D007661 1.6e-20 104.8 419 31.7
Gohir.A13G114700 Gossypium hirsutum HOM05D007561 ORTHO05D007661 4.6e-20 103.2 450 29.3
Gorai.012G026500 Gossypium raimondii HOM05D007561 ORTHO05D007661 4.6e-20 103.2 397 31.0
Gohir.D13G117500 Gossypium hirsutum HOM05D007561 ORTHO05D007661 1.1e-18 98.6 417 29.5
Gorai.013G132100 Gossypium raimondii HOM05D007561 ORTHO05D007661 3.3e-18 97.1 412 29.1
Lalb_Chr22g0358291 Lupinus albus HOM05D007561 ORTHO05D007661 4.3e-18 96.7 490 28.8
Sabra05G0074100 Salix brachista HOM05D007561 ORTHO05D007661 4.3e-18 96.7 492 28.3
DCAR_009109 Daucus carota HOM05D007561 ORTHO05D007661 5.6e-18 96.3 444 29.7
Glyma.19G123300 Glycine max HOM05D007561 ORTHO05D007661 5.6e-18 96.3 444 30.0
VMungo1383G3023 Vigna mungo HOM05D007561 ORTHO05D007661 7.3e-18 95.9 425 31.3
Ciclev10013885m.g Citrus clementina HOM05D007561 ORTHO05D007661 9.5e-18 95.5 473 26.6
Haze_20355 Corylus avellana HOM05D007561 ORTHO05D007661 1.2e-17 95.1 372 32.8
Cfa019892 Carpinus fangiana HOM05D007561 ORTHO05D007661 1.6e-17 94.7 349 32.4
CiPaw.09G161100 Carya illinoinensis HOM05D007561 ORTHO05D007661 1.6e-17 94.7 505 29.5
Gohir.D04G022850 Gossypium hirsutum HOM05D007561 ORTHO05D007661 2.8e-17 94.0 331 32.6
Ah.04g149900 Amaranthus hybridus HOM05D007561 ORTHO05D007661 3.6e-17 93.6 419 30.3
MSTRG.6258 Avicennia marina HOM05D007561 ORTHO05D007661 4.7e-17 93.2 462 27.9
Ca_08339_v3 Cicer arietinum L. HOM05D007561 ORTHO05D007661 4.7e-17 93.2 414 31.6
Phvul.001G109100 Phaseolus vulgaris HOM05D007561 ORTHO05D007661 6.2e-17 92.8 427 29.5
Sabra07G0062300 Salix brachista HOM05D007561 ORTHO05D007661 8.1e-17 92.4 411 29.0
Duzib177G0099 Durio zibethinus HOM05D007561 ORTHO05D007661 1.1e-16 92.0 442 29.4
Gohir.A05G393000 Gossypium hirsutum HOM05D007561 ORTHO05D007661 1.8e-16 91.3 359 31.5
PGR042G3351 Punica granatum HOM05D007561 ORTHO05D007661 4.0e-16 90.1 462 30.7
AUR62018475 Chenopodium quinoa HOM05D007561 ORTHO05D007661 6.8e-16 89.4 497 27.2
Psat3g083040 Pisum sativum HOM05D007561 ORTHO05D007661 6.8e-16 89.4 465 29.5
PSO732G0159 Papaver somniferum HOM05D007561 ORTHO05D007661 8.9e-16 89.0 523 27.3
RhsimUnG0021900 Rhododendron simsii HOM05D007561 ORTHO05D007661 8.9e-16 89.0 442 30.1
AUR62020949 Chenopodium quinoa HOM05D007561 ORTHO05D007661 2.0e-15 87.8 487 27.7
PSO675G2416 Papaver somniferum HOM05D007561 ORTHO05D007661 5.8e-15 86.3 505 27.9
Glyma.03G118900 Glycine max HOM05D007561 ORTHO05D007661 2.9e-14 84.0 466 27.9
Migut.J01597 Erythranthe guttata HOM05D007561 ORTHO05D007661 4.9e-14 83.2 462 28.1
CsaV3_3G039500 Cucumis sativus L. HOM05D007561 ORTHO05D007661 1.1e-13 82.0 399 29.3
FAN17G1891 Fragaria x ananassa HOM05D007561 ORTHO05D007661 1.1e-13 82.0 550 27.3
ClCG10G016860 Citrullus lanatus HOM05D007561 ORTHO05D007661 1.4e-13 81.6 399 29.6
MELO3C009692.2 Cucumis melo HOM05D007561 ORTHO05D007661 1.9e-13 81.3 361 29.4
QL02p091854 Quercus lobata HOM05D007561 ORTHO05D007661 2.4e-13 80.9 409 29.8
PGR142G0684 Punica granatum HOM05D007561 ORTHO05D007661 3.2e-13 80.5 351 32.5
Aqoxy2G00670 Aquilegia oxysepala HOM05D007561 ORTHO05D007661 4.1e-13 80.1 511 27.8
FAN22G1656 Fragaria x ananassa HOM05D007561 ORTHO05D007661 4.1e-13 80.1 552 27.0
Lsat_1_v5_gn_8_53121 Lactuca sativa HOM05D002654 ORTHO05D002430 4.1e-13 80.1 372 29.0
FvH4_4g10470 Fragaria vesca HOM05D007561 ORTHO05D007661 7.1e-13 79.3 551 26.5
Lj1g0025432 Lotus japonicus HOM05D007561 ORTHO05D007661 9.2e-13 79.0 414 28.7
Atru.chr8.931 Acer truncatum HOM05D007561 ORTHO05D007661 1.2e-12 78.6 489 26.6
MSTRG.19744 Avicennia marina HOM05D007561 ORTHO05D007661 2.7e-12 77.4 497 26.4
HPP92_021156 Vanilla planifolia HOM05D007561 ORTHO05D007661 2.7e-12 77.4 462 27.5
FAN12G0994 Fragaria x ananassa HOM05D007561 ORTHO05D007661 3.5e-12 77.0 551 26.3
FAN12G2197 Fragaria x ananassa HOM05D007561 ORTHO05D007661 6.0e-12 76.3 526 26.0
Sed0023829 Sechium edule HOM05D007561 ORTHO05D007661 1.3e-11 75.1 477 27.5
RcHm_v2.0_Chr3g0495011 Rosa chinensis HOM05D007561 ORTHO05D007661 5.1e-11 73.2 522 27.4
Eucgr.A02170 Eucalyptus grandis HOM05D007561 ORTHO05D007661 1.1e-10 72.0 464 26.7
Sed0024594 Sechium edule HOM05D007561 ORTHO05D007661 1.1e-10 72.0 363 28.7
SGA_v2.0_scaffold69G23211 Striga asiatica HOM05D007561 ORTHO05D007661 1.1e-10 72.0 376 28.7
HanXRQChr12g0380721 Helianthus annuus HOM05D002654 ORTHO05D002430 1.9e-10 71.2 395 27.6
ECA234G4854 Erigeron canadensis HOM05D000087 ORTHO05D000439 3.3e-10 70.5 411 29.0
Manes.06G093600 Manihot esculenta HOM05D002654 ORTHO05D002430 3.3e-10 70.5 367 29.7
FAN07G2764 Fragaria x ananassa HOM05D007561 ORTHO05D007661 5.6e-10 69.7 541 26.2
HanXRQChr12g0362591 Helianthus annuus HOM05D002654 ORTHO05D002430 5.6e-10 69.7 397 28.5
Hma1.2p1_1686F.1_g297500 Hydrangea macrophylla HOM05D007561 ORTHO05D007661 1.4e-08 65.1 258 30.6
Migut.K00204 Erythranthe guttata HOM05D007561 ORTHO05D007661 1.8e-08 64.7 394 29.4
HanXRQChr12g0362581 Helianthus annuus HOM05D002654 ORTHO05D002430 1.8e-08 64.7 312 28.8
ECA233G3156 Erigeron canadensis HOM05D002654 ORTHO05D002430 4.0e-08 63.5 334 29.3
PGR042G3883 Punica granatum HOM05D007561 ORTHO05D007661 4.0e-08 63.5 397 29.2
Sc13g0000670 Simmondsia chinensis HOM05D007561 ORTHO05D007661 4.0e-08 63.5 390 28.5
CAN.G58.27 Capsicum annuum HOM05D002654 ORTHO05D002430 5.2e-08 63.2 406 25.4
Cfa008990 Carpinus fangiana HOM05D002654 ORTHO05D002430 6.9e-08 62.8 363 27.5
unitig_899.g15656 Utricularia gibba HOM05D007561 ORTHO05D007661 6.9e-08 62.8 292 30.5
ATR0564G399 Amborella trichopoda HOM05D002654 ORTHO05D002430 1.2e-07 62.0 437 26.8
CANSAT78G1013 Cannabis sativa HOM05D007561 ORTHO05D007661 1.2e-07 62.0 496 26.6
Eucgr.G02509 Eucalyptus grandis HOM05D002654 ORTHO05D002430 2.0e-07 61.2 441 27.4
CiPaw.05G136200 Carya illinoinensis HOM05D002654 ORTHO05D002430 3.4e-07 60.5 415 25.3
Dinv34160 Davidia involucrata HOM05D002654 ORTHO05D002430 3.4e-07 60.5 411 28.7
Nitab4.5_0000703g0220 Nicotiana tabacum HOM05D002654 ORTHO05D002430 3.4e-07 60.5 398 24.1
Hma1.2p1_0795F.1_g218740 Hydrangea macrophylla HOM05D002654 ORTHO05D002430 4.4e-07 60.1 362 26.2
Cpa.g.sc128.17 Carica papaya HOM05D002654 ORTHO05D002430 5.8e-07 59.7 475 25.9
CARHR145350 Cardamine hirsuta HOM05D002654 ORTHO05D002430 9.9e-07 58.9 352 30.7
PSO339G6289 Papaver somniferum HOM05D007561 ORTHO05D007661 1.7e-06 58.2 514 26.3
COL.COLO4_23006 Corchorus olitorius HOM05D002654 ORTHO05D002430 4.9e-06 56.6 360 28.3
Actinidia18379 Actinidia chinensis HOM05D007561 ORTHO05D007661 6.4e-06 56.2 483 24.6
PGSC0003DMG400031263 Solanum tuberosum HOM05D002654 ORTHO05D002430 6.4e-06 56.2 395 25.1
CAN.G628.23 Capsicum annuum HOM05D002654 ORTHO05D002430 8.4e-06 55.8 345 29.0
THA.LOC104805156 Tarenaya hassleriana HOM05D002654 ORTHO05D002430 8.4e-06 55.8 354 28.2


User provided reference genes

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