Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21735 Brassica carinata HOM05D012115 ORTHO05D011862 2.9e-111 405.2 204 100.0
BolC2t06183H Brassica oleracea HOM05D031351 ORTHO05D011862 6.3e-45 184.9 265 46.4
AL5G33890 Arabidopsis lyrata HOM05D012115 ORTHO05D011862 3.4e-27 125.9 122 54.9
CARHR048300 Cardamine hirsuta HOM05D012115 ORTHO05D011862 4.4e-14 82.4 115 37.4
AL2G12210 Arabidopsis lyrata HOM05D022147 ORTHO05D011862 2.8e-13 79.7 116 39.7
Carub.0002s0172 Capsella rubella HOM05D012115 ORTHO05D011862 7.0e-12 75.1 115 38.3
A08p00240 Brassica napus HOM05D012115 ORTHO05D011862 2.0e-11 73.6 122 41.0
AL2G12310 Arabidopsis lyrata HOM05D012115 ORTHO05D011862 4.5e-11 72.4 117 37.6
BraA08t32081Z Brassica rapa HOM05D012115 ORTHO05D011862 4.5e-11 72.4 117 41.0
A10p14240 Brassica napus HOM05D000069 ORTHO05D011862 2.2e-10 70.1 118 40.7
BraA10t43515Z Brassica rapa HOM05D000069 ORTHO05D011862 2.2e-10 70.1 118 40.7
Carub.0002s0165 Capsella rubella HOM05D012115 ORTHO05D011862 2.9e-10 69.7 115 34.8
Sp2g01380 Schrenkiella parvula HOM05D012115 ORTHO05D011862 2.9e-10 69.7 115 38.3
A03p13070 Brassica napus HOM05D000069 ORTHO05D011862 5.0e-10 68.9 112 32.1
BraA03t10617Z Brassica rapa HOM05D000069 ORTHO05D011862 5.0e-10 68.9 112 32.1
BcaC01g06455 Brassica carinata HOM05D000069 ORTHO05D011862 1.1e-09 67.8 112 32.1
C03p15290 Brassica napus HOM05D000069 ORTHO05D011862 1.1e-09 67.8 112 32.1
AL4G33840 Arabidopsis lyrata HOM05D022147 ORTHO05D011862 7.2e-09 65.1 115 34.8
C05p13920 Brassica napus HOM05D012115 ORTHO05D021850 8.0e-08 61.6 133 33.8
AT5G05050 Arabidopsis thaliana HOM05D031351 ORTHO05D011862 1.0e-07 61.2 109 33.0
Nitab4.5_0001608g0070 Nicotiana tabacum HOM05D000069 ORTHO05D000060 1.4e-07 60.8 105 34.3
A09p37220 Brassica napus HOM05D000069 ORTHO05D000060 6.8e-07 58.5 94 34.0
A09p37270 Brassica napus HOM05D000069 ORTHO05D000060 6.8e-07 58.5 94 34.0
Eucgr.L03603 Eucalyptus grandis HOM05D000069 ORTHO05D000060 6.8e-07 58.5 97 29.9
FAN18G2157 Fragaria x ananassa HOM05D000069 ORTHO05D000060 6.8e-07 58.5 89 37.1
Nn8g39524 Nelumbo nucifera HOM05D000069 ORTHO05D008115 8.8e-07 58.2 72 37.5
Nitab4.5_0002076g0130 Nicotiana tabacum HOM05D000069 ORTHO05D000060 8.8e-07 58.2 88 36.4
Migut.E01493 Erythranthe guttata HOM05D009118 ORTHO05D035174 1.2e-06 57.8 74 39.2
Nn1g09903 Nelumbo nucifera HOM05D000069 ORTHO05D000060 1.2e-06 57.8 140 27.9
RcHm_v2.0_Chr7g0191791 Rosa chinensis HOM05D000069 ORTHO05D000060 1.2e-06 57.8 89 37.1
TWI73G0195 Tripterygium wilfordii HOM05D000069 ORTHO05D011390 1.2e-06 57.8 86 36.0
Cpa.g.sc4.28 Carica papaya HOM05D000069 ORTHO05D000060 1.5e-06 57.4 88 38.6
PGR042G1099 Punica granatum HOM05D000069 ORTHO05D000060 1.5e-06 57.4 48 52.1
CSS0044148 Camellia sinensis var. sinensis HOM05D000069 ORTHO05D000060 2.0e-06 57.0 90 31.1
CANSAT35G1405 Cannabis sativa HOM05D000069 ORTHO05D000060 2.6e-06 56.6 98 34.7
Ca_16108_v3 Cicer arietinum L. HOM05D000069 ORTHO05D000060 2.6e-06 56.6 114 31.6
Hma1.2p1_0785F.1_g217510 Hydrangea macrophylla HOM05D000069 ORTHO05D015030 2.6e-06 56.6 49 49.0
Manes.13G139350 Manihot esculenta HOM05D000069 ORTHO05D036641 2.6e-06 56.6 48 50.0
A06p11750 Brassica napus HOM05D012115 ORTHO05D021850 3.4e-06 56.2 137 31.4
BraA06t24341Z Brassica rapa HOM05D012115 ORTHO05D021850 3.4e-06 56.2 137 31.4
FAN04G2507 Fragaria x ananassa HOM05D000069 ORTHO05D000060 3.4e-06 56.2 89 36.0
FAN08G2770 Fragaria x ananassa HOM05D000069 ORTHO05D000060 3.4e-06 56.2 89 36.0
RcHm_v2.0_Chr3g0455011 Rosa chinensis HOM05D000069 ORTHO05D000060 3.4e-06 56.2 128 28.9
COL.COLO4_17497 Corchorus olitorius HOM05D000069 ORTHO05D000060 4.4e-06 55.8 91 34.1
HanXRQChr06g0166581 Helianthus annuus HOM05D000069 ORTHO05D011862 4.4e-06 55.8 94 38.3
Lsat_1_v5_gn_7_24101 Lactuca sativa HOM05D000069 ORTHO05D008115 4.4e-06 55.8 126 29.4
MD06G1161000 Malus domestica HOM05D000069 ORTHO05D000060 4.4e-06 55.8 88 38.6
MD10G1282100 Malus domestica HOM05D000069 ORTHO05D000060 4.4e-06 55.8 94 34.0
Oeu056702.1 Olea europaea HOM05D000069 ORTHO05D000060 4.4e-06 55.8 75 38.7
Peaxi162Scf00282g00713 Petunia axillaris HOM05D000069 ORTHO05D000060 4.4e-06 55.8 60 43.3
Peaxi162Scf01118g00004 Petunia axillaris HOM05D000069 ORTHO05D000060 4.4e-06 55.8 60 43.3
THA.LOC104812635 Tarenaya hassleriana HOM05D000069 ORTHO05D000060 4.4e-06 55.8 95 32.6
EL10Ac8g20524 Beta vulgaris HOM05D000069 ORTHO05D000060 5.7e-06 55.5 58 37.9
Haze_06252 Corylus avellana HOM05D000069 ORTHO05D000060 5.7e-06 55.5 76 35.5
Gohir.A04G044032 Gossypium hirsutum HOM05D000069 ORTHO05D000060 5.7e-06 55.5 78 35.9
Lsat_1_v5_gn_1_28661 Lactuca sativa HOM05D000069 ORTHO05D229992 5.7e-06 55.5 86 34.9
Manes.14G056700 Manihot esculenta HOM05D000069 ORTHO05D000060 5.7e-06 55.5 113 36.3
Phvul.006G176920 Phaseolus vulgaris HOM05D000069 ORTHO05D000060 5.7e-06 55.5 85 30.6
RcHm_v2.0_Chr3g0455051 Rosa chinensis HOM05D000069 ORTHO05D000060 5.7e-06 55.5 128 28.9
RcHm_v2.0_Chr3g0455061 Rosa chinensis HOM05D000069 ORTHO05D000060 5.7e-06 55.5 128 28.9
Sc14g0008610 Simmondsia chinensis HOM05D000069 ORTHO05D000060 5.7e-06 55.5 173 27.7
COL.COLO4_17499 Corchorus olitorius HOM05D000069 ORTHO05D000060 7.5e-06 55.1 85 36.5
Rhsim08G0120700 Rhododendron simsii HOM05D030015 ORTHO05D000060 7.5e-06 55.1 108 36.1
Rhsim12G0170500 Rhododendron simsii HOM05D000069 ORTHO05D000060 7.5e-06 55.1 89 37.1
Atru.chr10.1685 Acer truncatum HOM05D000069 ORTHO05D000060 9.8e-06 54.7 66 36.4
Haze_06253 Corylus avellana HOM05D000069 ORTHO05D000060 9.8e-06 54.7 76 35.5
Duzib205G1773 Durio zibethinus HOM05D000069 ORTHO05D000060 9.8e-06 54.7 114 32.5
ECA232G4757 Erigeron canadensis HOM05D000069 ORTHO05D000060 9.8e-06 54.7 89 36.0
Gohir.D05G338933 Gossypium hirsutum HOM05D000069 ORTHO05D000060 9.8e-06 54.7 98 28.6
Gohir.D05G339200 Gossypium hirsutum HOM05D000069 ORTHO05D000060 9.8e-06 54.7 98 28.6
Gohir.D05G339900 Gossypium hirsutum HOM05D000069 ORTHO05D000060 9.8e-06 54.7 98 28.6
Medtr3g075390 Medicago truncatula HOM05D000069 ORTHO05D000060 9.8e-06 54.7 91 31.9
Nn1g09170 Nelumbo nucifera HOM05D000069 ORTHO05D008115 9.8e-06 54.7 102 33.3
vmacro16691 Vaccinium macrocarpon HOM05D000069 ORTHO05D000060 9.8e-06 54.7 89 36.0
GSVIVG01007585001 Vitis vinifera HOM05D000069 ORTHO05D000060 9.8e-06 54.7 88 38.6


User provided reference genes

Program Settings