Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 1.3e-183 646.4 350 100.0
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 3.8e-151 538.5 353 83.9
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 5.0e-151 538.1 349 85.1
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 8.5e-151 537.3 359 84.7
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 3.2e-150 535.4 359 85.0
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 3.6e-149 531.9 343 86.3
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 6.1e-149 531.2 344 87.2
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 4.4e-147 525.0 350 83.1
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 7.5e-147 524.2 348 84.8
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 7.5e-147 524.2 348 84.8
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 1.2e-144 516.9 351 82.1
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 1.2e-144 516.9 351 82.1
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 1.8e-140 503.1 354 81.9
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 2.0e-136 489.6 374 75.4
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 7.2e-134 481.1 366 76.2
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 8.3e-130 467.6 388 71.1
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 2.4e-129 466.1 349 75.6
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 2.6e-123 446.0 354 71.5
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 5.6e-110 401.7 354 66.4
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 2.3e-95 353.2 355 60.3
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 5.1e-95 352.1 351 59.8
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.9e-94 350.1 351 59.8
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 1.9e-94 350.1 351 59.8
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 2.8e-93 346.3 357 59.9
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 6.9e-92 341.7 354 58.2
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 2.7e-88 329.7 353 56.9
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 8.7e-87 324.7 348 57.2
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 8.1e-85 318.2 354 56.5
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 1.8e-84 317.0 348 55.7
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.8e-84 317.0 346 54.9
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 5.3e-84 315.5 350 56.0
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 1.2e-83 314.3 356 54.2
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 1.2e-83 314.3 343 58.9
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.3e-82 310.8 352 55.4
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 2.2e-82 310.1 355 53.5
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 1.1e-81 307.8 339 54.6
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 2.4e-81 306.6 351 53.3
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 7.9e-80 301.6 351 53.6
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 7.9e-80 301.6 351 53.6
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 1.8e-79 300.4 368 52.7
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 1.8e-79 300.4 336 55.7
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 1.9e-78 297.0 355 53.0
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 1.9e-78 297.0 355 53.8
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 2.5e-78 296.6 363 52.3
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 2.8e-77 293.1 343 54.2
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.2e-77 292.0 343 54.2
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 8.1e-77 291.6 356 52.8
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 1.8e-76 290.4 339 54.3
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 2.4e-76 290.0 353 50.1
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.2e-75 287.7 338 52.1
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 5.8e-75 285.4 348 52.0
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 9.9e-75 284.6 352 52.0
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 9.9e-75 284.6 356 52.0
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 9.9e-75 284.6 356 52.0
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.3e-74 284.3 356 50.8
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.3e-74 284.3 366 51.6
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 2.2e-74 283.5 356 53.4
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 4.9e-74 282.3 361 51.8
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 1.1e-73 281.2 354 52.0
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 1.1e-73 281.2 354 52.0
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 1.9e-73 280.4 348 52.3
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.9e-73 280.4 356 50.8
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 7.1e-73 278.5 331 54.1
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 2.1e-72 276.9 329 52.9
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 2.7e-72 276.6 345 49.9
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 1.3e-71 274.2 352 50.9
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.3e-71 274.2 347 49.3
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 2.3e-71 273.5 345 52.5
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 3.0e-71 273.1 339 52.2
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 1.9e-70 270.4 356 48.9
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 3.3e-70 269.6 352 49.1
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 9.6e-70 268.1 358 49.4
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 1.6e-69 267.3 351 49.3
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 1.8e-68 263.8 344 50.9
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 1.8e-68 263.8 359 47.9
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 3.1e-68 263.1 320 50.9
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 1.5e-67 260.8 349 46.4
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 2.0e-67 260.4 359 48.7
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 2.6e-67 260.0 360 48.1
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 3.4e-67 259.6 335 52.5
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 8.4e-66 255.0 349 47.9
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.1e-65 254.6 348 48.9
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 2.5e-65 253.4 343 49.3
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 1.2e-64 251.1 345 47.2
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 1.6e-64 250.8 344 50.0
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 1.3e-63 247.7 369 46.9
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 1.3e-63 247.7 383 42.0
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 1.9e-62 243.8 349 46.4
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 5.7e-62 242.3 345 46.7
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 2.2e-61 240.4 353 47.3
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 8.2e-61 238.4 337 46.6
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 5.3e-60 235.7 349 44.4
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 9.0e-60 235.0 344 45.1
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 1.2e-59 234.6 352 45.7
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 2.0e-59 233.8 360 45.0
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 3.8e-58 229.6 312 49.4
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 1.4e-57 227.6 345 43.5
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 3.2e-57 226.5 299 46.5
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 3.2e-57 226.5 341 47.8
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 9.4e-57 224.9 340 46.2
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 2.7e-56 223.4 367 43.3
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 3.9e-55 219.5 341 43.7
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 8.8e-55 218.4 348 43.7
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 1.5e-54 217.6 339 42.5
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.5e-54 216.9 345 44.1
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 2.5e-54 216.9 338 42.0
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 4.3e-54 216.1 279 51.3
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 1.3e-53 214.5 346 43.1
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 1.3e-53 214.5 339 44.2
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 1.1e-52 211.5 333 43.8
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 6.5e-50 202.2 329 41.9
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 3.6e-48 196.4 341 40.2
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 1.4e-47 194.5 337 42.4
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 1.4e-47 194.5 337 42.4
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 5.1e-47 192.6 356 41.0
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 3.3e-46 189.9 297 45.8
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 3.7e-45 186.4 358 40.2
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 2.0e-43 180.6 344 41.6
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 7.7e-43 178.7 176 60.2
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 1.4e-39 167.9 345 40.0
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 1.4e-39 167.9 352 38.4
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 7.4e-38 162.2 305 39.0
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 1.3e-37 161.4 364 37.6
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 8.2e-37 158.7 227 49.3
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 9.1e-36 155.2 128 70.3
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 4.2e-33 146.4 273 41.8
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 2.1e-32 144.1 320 36.2
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 3.6e-32 143.3 328 36.6
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 8.0e-32 142.1 368 35.6
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 1.0e-31 141.7 127 61.4
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 2.2e-29 134.0 312 37.2
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 1.6e-27 127.9 319 35.4
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 5.5e-25 119.4 232 39.7
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 1.6e-24 117.9 430 30.9
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 2.3e-23 114.0 172 44.8
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 3.7e-21 106.7 106 55.7
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 2.7e-19 100.5 155 42.6
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 5.0e-18 96.3 101 55.4
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 8.6e-18 95.5 195 42.1
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 1.2e-16 91.7 339 30.4
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 6.1e-16 89.4 140 48.6
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 3.4e-14 83.6 171 38.6
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.0e-10 72.0 91 45.1
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 1.3e-10 71.6 140 40.0
Cre02.g082300 Chlamydomonas reinhardtii HOM05D004638 ORTHO05D005443 2.0e-06 57.8 401 24.9
Lsat_1_v5_gn_9_30260 Lactuca sativa HOM05D004638 ORTHO05D005443 4.4e-06 56.6 60 56.7
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 9.8e-06 55.5 50 58.0


User provided reference genes

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