Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21722 Brassica carinata HOM05D007902 ORTHO05D009839 3.2e-101 371.7 182 100.0
BcaC03g13156 Brassica carinata HOM05D007902 ORTHO05D009839 4.2e-85 318.2 182 87.4
C02p02280 Brassica napus HOM05D007902 ORTHO05D009839 2.7e-84 315.5 182 86.3
BraA02t04842Z Brassica rapa HOM05D007902 ORTHO05D009839 8.8e-83 310.5 173 89.0
Sp6g37500 Schrenkiella parvula HOM05D007902 ORTHO05D009839 4.2e-77 291.6 180 81.1
AL6G15200 Arabidopsis lyrata HOM05D007902 ORTHO05D009839 1.6e-71 273.1 184 76.6
BcaC06g32241 Brassica carinata HOM05D007902 ORTHO05D009839 1.3e-70 270.0 185 77.3
AT5G05330 Arabidopsis thaliana HOM05D007902 ORTHO05D009839 2.2e-70 269.2 184 75.0
BolC9t59901H Brassica oleracea HOM05D007902 ORTHO05D009839 2.2e-70 269.2 184 76.1
BraA10t45132Z Brassica rapa HOM05D007902 ORTHO05D009839 1.1e-69 266.9 183 76.5
BolC2t06195H Brassica oleracea HOM05D007902 ORTHO05D009839 3.2e-69 265.4 173 78.6
C09p71380 Brassica napus HOM05D007902 ORTHO05D009839 7.2e-69 264.2 181 77.9
CARHR207920 Cardamine hirsuta HOM05D007902 ORTHO05D009839 2.4e-64 249.2 184 72.8
Carub.0006s0425 Capsella rubella HOM05D007902 ORTHO05D009839 2.9e-62 242.3 183 68.9
Thhalv10014946m.g Eutrema salsugineum HOM05D007902 ORTHO05D009839 2.2e-57 226.1 137 81.0
Gohir.A13G005700 Gossypium hirsutum HOM05D007902 ORTHO05D009839 1.0e-30 137.5 171 45.6
TAR623G0347 Trochodendron aralioides HOM05D007902 ORTHO05D009839 2.3e-30 136.3 173 45.1
Gorai.013G006100 Gossypium raimondii HOM05D007902 ORTHO05D009839 6.6e-30 134.8 171 46.2
Potri.019G049100 Populus trichocarpa HOM05D007902 ORTHO05D009839 8.6e-30 134.4 174 44.3
A03p43050 Brassica napus HOM05D007902 ORTHO05D009839 1.5e-29 133.7 79 81.0
Cpa.g.sc19.89 Carica papaya HOM05D007902 ORTHO05D009839 1.5e-29 133.7 188 44.1
A09p12450 Brassica napus HOM05D007902 ORTHO05D009839 2.5e-29 132.9 79 81.0
BraA07t29812Z Brassica rapa HOM05D007902 ORTHO05D009839 2.5e-29 132.9 79 81.0
Gohir.D13G005400 Gossypium hirsutum HOM05D007902 ORTHO05D009839 3.3e-29 132.5 187 43.3
Actinidia07804 Actinidia chinensis HOM05D007902 ORTHO05D009839 5.6e-29 131.7 169 46.7
Manes.07G138200 Manihot esculenta HOM05D007902 ORTHO05D009839 5.6e-29 131.7 181 43.6
Eucgr.G03123 Eucalyptus grandis HOM05D007902 ORTHO05D009839 7.3e-29 131.3 162 46.9
Sabra19G0058600 Salix brachista HOM05D007902 ORTHO05D009839 1.2e-28 130.6 187 40.1
QL08p064506 Quercus lobata HOM05D007902 ORTHO05D009839 2.1e-28 129.8 189 43.9
Ciclev10032767m.g Citrus clementina HOM05D007902 ORTHO05D009839 4.0e-27 125.6 151 47.7
Dinv21823 Davidia involucrata HOM05D007902 ORTHO05D009839 2.0e-26 123.2 173 41.6
Hma1.2p1_0292F.1_g115760 Hydrangea macrophylla HOM05D007902 ORTHO05D009839 3.4e-26 122.5 170 42.4
Peaxi162Scf00464g00015 Petunia axillaris HOM05D007902 ORTHO05D009839 1.3e-25 120.6 167 43.7
RcHm_v2.0_Chr1g0371741 Rosa chinensis HOM05D007902 ORTHO05D009839 2.2e-25 119.8 179 43.6
Haze_17334 Corylus avellana HOM05D007902 ORTHO05D009839 2.9e-25 119.4 165 43.6
FvH4_7g25601 Fragaria vesca HOM05D007902 ORTHO05D009839 3.8e-25 119.0 156 44.2
Aqoxy4G02352 Aquilegia oxysepala HOM05D007902 ORTHO05D009839 6.4e-25 118.2 187 40.6
FAN03G2841 Fragaria x ananassa HOM05D001122 ORTHO05D001877 8.4e-25 117.9 157 43.9
Prupe.2G261300 Prunus persica HOM05D007902 ORTHO05D009839 1.4e-24 117.1 178 42.7
vmacro09979 Vaccinium macrocarpon HOM05D007902 ORTHO05D009839 1.9e-24 116.7 152 43.4
Sopen06g015820 Solanum pennellii HOM05D007902 ORTHO05D009839 4.2e-24 115.5 155 45.2
FAN01G1070 Fragaria x ananassa HOM05D001122 ORTHO05D001877 7.1e-24 114.8 149 43.0
CAN.G591.5 Capsicum annuum HOM05D007902 ORTHO05D009839 9.3e-24 114.4 178 41.6
Ca_06023_v3 Cicer arietinum L. HOM05D007902 ORTHO05D009839 9.3e-24 114.4 150 42.7
Nn2g10362 Nelumbo nucifera HOM05D007902 ORTHO05D009839 9.3e-24 114.4 170 42.9
Migut.F00588 Erythranthe guttata HOM05D007902 ORTHO05D009839 1.2e-23 114.0 171 41.5
Lsat_1_v5_gn_9_59200 Lactuca sativa HOM05D007902 ORTHO05D009839 1.2e-23 114.0 174 42.0
EL10Ac2g04265 Beta vulgaris HOM05D007902 ORTHO05D009839 3.5e-23 112.5 162 39.5
CiPaw.01G304600 Carya illinoinensis HOM05D007902 ORTHO05D009839 4.6e-23 112.1 157 42.7
Cc02_g05590 Coffea canephora HOM05D007902 ORTHO05D009839 4.6e-23 112.1 185 38.9
PGR142G4074 Punica granatum HOM05D007902 ORTHO05D009839 6.0e-23 111.7 184 38.6
TWI53G0910 Tripterygium wilfordii HOM05D007902 ORTHO05D009839 7.8e-23 111.3 146 45.2
Psat1g014880 Pisum sativum HOM05D007902 ORTHO05D009839 1.7e-22 110.2 143 44.1
CANSAT56G3130 Cannabis sativa HOM05D007902 ORTHO05D009839 3.0e-22 109.4 178 39.9
HanXRQChr09g0251491 Helianthus annuus HOM05D007902 ORTHO05D009839 3.0e-22 109.4 156 42.3
COL.COLO4_26867 Corchorus olitorius HOM05D005928 ORTHO05D007500 6.6e-22 108.2 155 43.2
MD07G1231300 Malus domestica HOM05D007902 ORTHO05D009839 6.6e-22 108.2 175 43.4
FAN06G1561 Fragaria x ananassa HOM05D007902 ORTHO05D009839 8.7e-22 107.8 170 42.9
A08p12840 Brassica napus HOM05D007902 ORTHO05D009839 1.5e-21 107.1 90 63.3
MD01G1163300 Malus domestica HOM05D007902 ORTHO05D009839 4.3e-21 105.5 175 41.7
arahy.Tifrunner.gnm1.ann1.C7E7HV Arachis hypogaea HOM05D007902 ORTHO05D009839 5.6e-21 105.1 141 43.3
PSO017G6410 Papaver somniferum HOM05D007902 ORTHO05D009839 9.6e-21 104.4 185 38.4
arahy.Tifrunner.gnm1.ann1.0H4UJT Arachis hypogaea HOM05D007902 ORTHO05D009839 1.3e-20 104.0 141 42.6
Medtr0191s0020 Medicago truncatula HOM05D007902 ORTHO05D009839 4.8e-20 102.1 146 41.8
SalBow5G2004 Salvia bowleyana HOM05D007902 ORTHO05D009839 1.1e-19 100.9 169 39.1
Thecc.10G175100 Theobroma cacao HOM05D007902 ORTHO05D009839 1.1e-19 100.9 170 42.4
BcaNung01853 Brassica carinata HOM05D003223 ORTHO05D014735 9.0e-19 97.8 59 78.0
Hund13474 Selenicereus undatus HOM05D007902 ORTHO05D009839 1.5e-18 97.1 175 38.3
Rhsim09G0183800 Rhododendron simsii HOM05D007902 ORTHO05D009839 1.7e-17 93.6 202 32.7
PSO407G0011 Papaver somniferum HOM05D007902 ORTHO05D009839 6.4e-17 91.7 152 38.8
Atru.chr12.150 Acer truncatum HOM05D005928 ORTHO05D007500 1.1e-16 90.9 171 39.2
PGSC0003DMG400029078 Solanum tuberosum HOM05D007902 ORTHO05D009839 6.0e-15 85.1 114 43.9
A10p30870 Brassica napus HOM05D000044 ORTHO05D000051 7.9e-15 84.7 75 64.0
Sc10g0002880 Simmondsia chinensis HOM05D007902 ORTHO05D009839 1.0e-14 84.3 76 53.9
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 3.9e-14 82.4 141 36.2
Nitab4.5_0000263g0270 Nicotiana tabacum HOM05D007902 ORTHO05D009839 5.1e-14 82.0 152 36.2
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 5.1e-14 82.0 197 30.5
Nitab4.5_0002713g0030 Nicotiana tabacum HOM05D007902 ORTHO05D009839 1.1e-13 80.9 152 35.5
TAR623G0840 Trochodendron aralioides HOM05D007902 ORTHO05D009839 1.1e-13 80.9 76 56.6
BolC4t25019H Brassica oleracea HOM05D000108 ORTHO05D012076 1.5e-13 80.5 53 67.9
CDE07G0481 Ceratophyllum demersum HOM05D007902 ORTHO05D009839 3.3e-13 79.3 128 38.3
unitig_52.g16781 Utricularia gibba HOM05D007902 ORTHO05D009839 3.3e-13 79.3 146 37.0
PGSC0003DMG400025304 Solanum tuberosum HOM05D000727 ORTHO05D000541 1.8e-11 73.6 167 29.9
Duzib248G1122 Durio zibethinus HOM05D000727 ORTHO05D000541 3.1e-11 72.8 170 32.4
LjContig00357g0001230 Lotus japonicus HOM05D007902 ORTHO05D009839 3.1e-11 72.8 157 35.0
TAR622G0466 Trochodendron aralioides HOM05D000727 ORTHO05D000541 4.0e-11 72.4 160 30.0
Solyc04g008820.3 Solanum lycopersicum HOM05D000727 ORTHO05D000541 6.9e-11 71.6 182 28.6
Sopen04g004000 Solanum pennellii HOM05D000727 ORTHO05D000541 6.9e-11 71.6 167 30.5
GSVIVG01034361001 Vitis vinifera HOM05D000727 ORTHO05D000541 6.9e-11 71.6 159 28.9
Nitab4.5_0002707g0040 Nicotiana tabacum HOM05D000727 ORTHO05D000541 9.0e-11 71.2 173 28.9
Thecc.02G153200 Theobroma cacao HOM05D000727 ORTHO05D000541 9.0e-11 71.2 165 31.5
BolC4t26224H Brassica oleracea HOM05D007902 ORTHO05D009839 1.2e-10 70.9 39 79.5
BcaC02g09961 Brassica carinata HOM05D001334 ORTHO05D001119 1.5e-10 70.5 45 71.1
Duzib132G0609 Durio zibethinus HOM05D000727 ORTHO05D000541 1.5e-10 70.5 170 31.2
Lalb_Chr17g0347071 Lupinus albus HOM05D007902 ORTHO05D009839 1.5e-10 70.5 86 41.9
HPP92_014761 Vanilla planifolia HOM05D000727 ORTHO05D000541 2.0e-10 70.1 161 29.8
THA.LOC104818386 Tarenaya hassleriana HOM05D000727 ORTHO05D000541 2.6e-10 69.7 168 29.8
Actinidia04069 Actinidia chinensis HOM05D000727 ORTHO05D000541 9.9e-10 67.8 179 27.4
MBI03_g13448_MAGBIO Magnolia biondii HOM05D000727 ORTHO05D000541 9.9e-10 67.8 162 28.4
Os08g0101100 Oryza sativa ssp. japonica HOM05D000727 ORTHO05D000541 9.9e-10 67.8 173 29.5
PSO339G3557 Papaver somniferum HOM05D000727 ORTHO05D000541 9.9e-10 67.8 147 31.3
Ah.01g011600 Amaranthus hybridus HOM05D000727 ORTHO05D000541 1.3e-09 67.4 182 27.5
BolC9t53688H Brassica oleracea HOM05D000727 ORTHO05D000541 1.3e-09 67.4 167 27.5
Carub.0006s2120 Capsella rubella HOM05D000727 ORTHO05D000541 1.3e-09 67.4 187 27.3
PSO206G0034 Papaver somniferum HOM05D000727 ORTHO05D000541 1.3e-09 67.4 173 28.9
Hund09512 Selenicereus undatus HOM05D000727 ORTHO05D000541 1.7e-09 67.0 182 31.3
AUR62032906 Chenopodium quinoa HOM05D000727 ORTHO05D000541 2.9e-09 66.2 179 27.4
AUR62017747 Chenopodium quinoa HOM05D000727 ORTHO05D000541 3.8e-09 65.9 180 26.7
Thhalv10004817m.g Eutrema salsugineum HOM05D000727 ORTHO05D000541 3.8e-09 65.9 184 28.3
Oeu054429.1 Olea europaea HOM05D007902 ORTHO05D009839 3.8e-09 65.9 147 34.7
Dinv02932 Davidia involucrata HOM05D000727 ORTHO05D000541 6.4e-09 65.1 175 29.1
DCAR_030351 Daucus carota HOM05D000727 ORTHO05D000541 8.4e-09 64.7 177 28.2
BcaB04g19869 Brassica carinata HOM05D000727 ORTHO05D000541 1.1e-08 64.3 171 28.1
BcaC04g23495 Brassica carinata HOM05D000727 ORTHO05D000541 1.1e-08 64.3 168 27.4
C09p07710 Brassica napus HOM05D000727 ORTHO05D000541 1.1e-08 64.3 168 27.4
COL.COLO4_08802 Corchorus olitorius HOM05D000576 ORTHO05D000368 1.1e-08 64.3 54 61.1
BolC4t23447H Brassica oleracea HOM05D013651 ORTHO05D013480 1.4e-08 63.9 104 39.4
BolC7t44774H Brassica oleracea HOM05D013651 ORTHO05D013480 1.4e-08 63.9 104 39.4
COL.COLO4_33133 Corchorus olitorius HOM05D000727 ORTHO05D000541 1.4e-08 63.9 177 31.6
Nn3g18557 Nelumbo nucifera HOM05D000727 ORTHO05D000541 1.4e-08 63.9 184 29.3
Prupe.1G350700 Prunus persica HOM05D000727 ORTHO05D000541 1.4e-08 63.9 165 27.9
BolC6t36021H Brassica oleracea HOM05D013651 ORTHO05D013480 1.9e-08 63.5 104 39.4
Cc11_g04510 Coffea canephora HOM05D000727 ORTHO05D000541 1.9e-08 63.5 159 27.0
HanXRQChr17g0540661 Helianthus annuus HOM05D000727 ORTHO05D000541 1.9e-08 63.5 212 28.8
SGA_v2.0_scaffold127G33972 Striga asiatica HOM05D000727 ORTHO05D000541 1.9e-08 63.5 165 30.3
TWI53G1801 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 1.9e-08 63.5 143 28.0
MSTRG.13668 Avicennia marina HOM05D000727 ORTHO05D000541 2.4e-08 63.2 181 28.2
Eucgr.J00336 Eucalyptus grandis HOM05D000727 ORTHO05D000541 2.4e-08 63.2 169 26.6
Hma1.2p1_0513F.1_g169510 Hydrangea macrophylla HOM05D000727 ORTHO05D000541 2.4e-08 63.2 185 24.3
Sc25g0001400 Simmondsia chinensis HOM05D000727 ORTHO05D000541 2.4e-08 63.2 183 25.7
TWI74G1375 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 2.4e-08 63.2 169 28.4
Gohir.D12G136500 Gossypium hirsutum HOM05D000727 ORTHO05D000541 3.2e-08 62.8 167 29.3
Gorai.008G147700 Gossypium raimondii HOM05D000727 ORTHO05D000541 3.2e-08 62.8 167 29.3
PGR044G1367 Punica granatum HOM05D000727 ORTHO05D000541 3.2e-08 62.8 183 29.0
ATR0124G023 Amborella trichopoda HOM05D000727 ORTHO05D000541 4.2e-08 62.4 182 27.5
Oeu036108.1 Olea europaea HOM05D000727 ORTHO05D000541 4.2e-08 62.4 186 29.0
Sp2g23750 Schrenkiella parvula HOM05D000727 ORTHO05D000541 4.2e-08 62.4 163 27.6
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 5.5e-08 62.0 161 26.7
Gohir.A12G133000 Gossypium hirsutum HOM05D000727 ORTHO05D000541 5.5e-08 62.0 167 29.3
CAN.G419.9 Capsicum annuum HOM05D000727 ORTHO05D000541 7.1e-08 61.6 168 26.8
A09p06950 Brassica napus HOM05D000727 ORTHO05D000541 9.3e-08 61.2 171 26.9
BraA09t36343Z Brassica rapa HOM05D000727 ORTHO05D000541 9.3e-08 61.2 171 26.9
CsaV3_5G021890 Cucumis sativus L. HOM05D000727 ORTHO05D000541 9.3e-08 61.2 173 27.2
AL6G30600 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 1.6e-07 60.5 168 26.2
RhsimUnG0102400 Rhododendron simsii HOM05D000727 ORTHO05D000541 2.1e-07 60.1 184 25.5
Sed0009333 Sechium edule HOM05D000727 ORTHO05D000541 2.7e-07 59.7 165 27.9
Aa31LG11G2850 Aethionema arabicum HOM05D000727 ORTHO05D000541 3.5e-07 59.3 210 26.7
AL6G34700 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 3.5e-07 59.3 183 29.0
C04p34590 Brassica napus HOM05D000108 ORTHO05D012076 3.5e-07 59.3 40 67.5
MD13G1001900 Malus domestica HOM05D000727 ORTHO05D000541 3.5e-07 59.3 184 28.8
Atru.chr11.63 Acer truncatum HOM05D000727 ORTHO05D000541 4.6e-07 58.9 166 27.7
Aqoxy3G04324 Aquilegia oxysepala HOM05D000727 ORTHO05D000541 4.6e-07 58.9 166 25.3
AT5G23420 Arabidopsis thaliana HOM05D000727 ORTHO05D000541 4.6e-07 58.9 182 29.1
BolC3t20084H Brassica oleracea HOM05D013651 ORTHO05D013480 4.6e-07 58.9 101 37.6
BcaNung03729 Brassica carinata HOM05D000727 ORTHO05D000541 6.0e-07 58.5 141 27.0
ECA246G0005 Erigeron canadensis HOM05D000727 ORTHO05D000541 6.0e-07 58.5 175 26.3
MSTRG.2077 Avicennia marina HOM05D000727 ORTHO05D000541 1.0e-06 57.8 181 26.0
Ciclev10016587m.g Citrus clementina HOM05D000727 ORTHO05D000541 1.0e-06 57.8 212 26.9
BraA02t09046Z Brassica rapa HOM05D000727 ORTHO05D000541 1.8e-06 57.0 178 26.4
CSS0018830 Camellia sinensis var. sinensis HOM05D000727 ORTHO05D000541 1.8e-06 57.0 179 25.1
Dinv17654 Davidia involucrata HOM05D000727 ORTHO05D000541 1.8e-06 57.0 183 26.8
Potri.007G000900 Populus trichocarpa HOM05D000727 ORTHO05D000541 1.8e-06 57.0 164 27.4
SEGI_07762 Sequoiadendron giganteum HOM05D052445 ORTHO05D000541 1.8e-06 57.0 181 25.4
A02p40980 Brassica napus HOM05D000727 ORTHO05D000541 3.0e-06 56.2 178 26.4
Sabra07G0000800 Salix brachista HOM05D000727 ORTHO05D000541 3.0e-06 56.2 159 26.4
SalBow2G1580 Salvia bowleyana HOM05D000727 ORTHO05D000541 3.0e-06 56.2 159 27.7
Cpa.g.sc247.1 Carica papaya HOM05D000727 ORTHO05D000541 5.1e-06 55.5 180 28.3
Migut.E00666 Erythranthe guttata HOM05D000727 ORTHO05D000541 6.7e-06 55.1 191 26.2
Lalb_Chr02g0144141 Lupinus albus HOM05D000727 ORTHO05D000541 8.7e-06 54.7 207 26.1


User provided reference genes

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