Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21720 Brassica carinata HOM05D004391 ORTHO05D005193 6.1e-45 183.7 90 100.0
BcaC06g32250 Brassica carinata HOM05D004391 ORTHO05D005193 7.3e-14 80.5 72 56.9
A10p30830 Brassica napus HOM05D004391 ORTHO05D005193 7.3e-14 80.5 72 56.9
C09p71330 Brassica napus HOM05D004391 ORTHO05D005193 7.3e-14 80.5 72 56.9
BolC9t59895H Brassica oleracea HOM05D004391 ORTHO05D005193 7.3e-14 80.5 72 56.9
BraA10t45125Z Brassica rapa HOM05D004391 ORTHO05D005193 7.3e-14 80.5 72 56.9
Aa31LG3G4110 Aethionema arabicum HOM05D004391 ORTHO05D005193 9.6e-14 80.1 52 71.2
AL3G22380 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 1.2e-13 79.7 52 69.2
AT3G10860 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 1.2e-13 79.7 52 69.2
A05p38380 Brassica napus HOM05D004391 ORTHO05D005193 1.2e-13 79.7 52 69.2
C05p57280 Brassica napus HOM05D004391 ORTHO05D005193 1.2e-13 79.7 52 69.2
BolC1t05350H Brassica oleracea HOM05D004391 ORTHO05D005193 1.2e-13 79.7 52 69.2
BolC5t34384H Brassica oleracea HOM05D004391 ORTHO05D005193 1.2e-13 79.7 52 69.2
BraA01t04219Z Brassica rapa HOM05D004391 ORTHO05D005193 1.2e-13 79.7 52 69.2
BraA05t22629Z Brassica rapa HOM05D004391 ORTHO05D005193 1.2e-13 79.7 52 69.2
Carub.0003s1010 Capsella rubella HOM05D004391 ORTHO05D005193 1.2e-13 79.7 52 69.2
Thhalv10021877m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 1.2e-13 79.7 52 69.2
Sp3g09180 Schrenkiella parvula HOM05D004391 ORTHO05D005193 1.2e-13 79.7 52 69.2
BcaB01g05713 Brassica carinata HOM05D004391 ORTHO05D005193 1.6e-13 79.3 72 55.6
CARHR085430 Cardamine hirsuta HOM05D004391 ORTHO05D005193 1.6e-13 79.3 52 67.3
Haze_12207 Corylus avellana HOM05D004391 ORTHO05D005193 1.6e-13 79.3 73 54.8
THA.LOC104823179 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 1.6e-13 79.3 52 69.2
Thhalv10015196m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 2.8e-13 78.6 72 55.6
Thhalv10015197m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 2.8e-13 78.6 72 55.6
Sp6g37680 Schrenkiella parvula HOM05D004391 ORTHO05D005193 2.8e-13 78.6 72 55.6
AL6G15270 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 3.6e-13 78.2 72 55.6
AT5G05370 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 3.6e-13 78.2 72 55.6
Carub.0006s0430 Capsella rubella HOM05D004391 ORTHO05D005193 3.6e-13 78.2 72 55.6
CAN.G874.64 Capsicum annuum HOM05D004391 ORTHO05D005193 3.6e-13 78.2 73 56.2
Cfa009172 Carpinus fangiana HOM05D004391 ORTHO05D005193 3.6e-13 78.2 73 54.8
Sp6g37450 Schrenkiella parvula HOM05D004391 ORTHO05D005193 3.6e-13 78.2 72 55.6
Aa31LG3G3850 Aethionema arabicum HOM05D004391 ORTHO05D005193 4.7e-13 77.8 52 69.2
THA.LOC104823167 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 4.7e-13 77.8 72 55.6
Aa31LG11G6460 Aethionema arabicum HOM05D004391 ORTHO05D005193 6.2e-13 77.4 72 55.6
THA.LOC109117202 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 6.2e-13 77.4 73 53.4
A03p02270 Brassica napus HOM05D004391 ORTHO05D005193 8.1e-13 77.0 72 54.2
Nitab4.5_0002167g0040 Nicotiana tabacum HOM05D004391 ORTHO05D005193 8.1e-13 77.0 66 59.1
Manes.18G125100 Manihot esculenta HOM05D004391 ORTHO05D005193 1.1e-12 76.6 73 53.4
Nitab4.5_0000105g0300 Nicotiana tabacum HOM05D004391 ORTHO05D005193 1.1e-12 76.6 73 56.2
CAN.G181.27 Capsicum annuum HOM05D004391 ORTHO05D005193 1.4e-12 76.3 73 54.8
Nitab4.5_0002902g0130 Nicotiana tabacum HOM05D004391 ORTHO05D005193 1.4e-12 76.3 52 69.2
CARHR207860 Cardamine hirsuta HOM05D004391 ORTHO05D005193 1.8e-12 75.9 72 54.2
Nitab4.5_0000311g0070 Nicotiana tabacum HOM05D004391 ORTHO05D005193 1.8e-12 75.9 73 54.8
Nitab4.5_0003194g0030 Nicotiana tabacum HOM05D004391 ORTHO05D005193 1.8e-12 75.9 73 56.2
THA.LOC104816504 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 1.8e-12 75.9 72 54.2
Eucgr.G03166 Eucalyptus grandis HOM05D004391 ORTHO05D005193 2.4e-12 75.5 73 52.1
Peaxi162Scf00131g10129 Petunia axillaris HOM05D004391 ORTHO05D005193 2.4e-12 75.5 73 54.8
Solyc06g082680.4 Solanum lycopersicum HOM05D004391 ORTHO05D005193 2.4e-12 75.5 73 54.8
Sopen06g034070 Solanum pennellii HOM05D004391 ORTHO05D005193 2.4e-12 75.5 73 54.8
PGSC0003DMG400020649 Solanum tuberosum HOM05D004391 ORTHO05D005193 2.4e-12 75.5 52 67.3
Solyc06g007540.3 Solanum lycopersicum HOM05D004391 ORTHO05D005193 3.1e-12 75.1 73 53.4
Sopen06g002450 Solanum pennellii HOM05D004391 ORTHO05D005193 3.1e-12 75.1 73 53.4
CANSAT80G1344 Cannabis sativa HOM05D004391 ORTHO05D005193 4.0e-12 74.7 73 52.1
Nn5g26793 Nelumbo nucifera HOM05D004391 ORTHO05D005193 5.3e-12 74.3 73 50.7
Potri.019G132000 Populus trichocarpa HOM05D004391 ORTHO05D005193 5.3e-12 74.3 73 54.8
PGR142G4161 Punica granatum HOM05D004391 ORTHO05D005193 5.3e-12 74.3 73 49.3
PGSC0003DMG400030477 Solanum tuberosum HOM05D004391 ORTHO05D005193 5.3e-12 74.3 73 53.4
Oeu025053.1 Olea europaea HOM05D004391 ORTHO05D005193 6.9e-12 73.9 73 53.4
Peaxi162Scf00455g00003 Petunia axillaris HOM05D004391 ORTHO05D005193 6.9e-12 73.9 73 53.4
Potri.013G159700 Populus trichocarpa HOM05D004391 ORTHO05D005193 6.9e-12 73.9 52 65.4
TWI53G1180 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 6.9e-12 73.9 73 50.7
Duzib128G1816 Durio zibethinus HOM05D004391 ORTHO05D005193 1.2e-11 73.2 73 49.3
MD03G1047800 Malus domestica HOM05D004391 ORTHO05D005193 1.2e-11 73.2 52 65.4
Prupe.6G038800 Prunus persica HOM05D004391 ORTHO05D005193 1.5e-11 72.8 73 53.4
RcHm_v2.0_Chr4g0441891 Rosa chinensis HOM05D004391 ORTHO05D005193 1.5e-11 72.8 73 49.3
TAR633G0676 Trochodendron aralioides HOM05D004391 ORTHO05D005193 1.5e-11 72.8 73 52.1
Dinv12291 Davidia involucrata HOM05D000139 ORTHO05D000103 2.0e-11 72.4 71 53.5
TWI09G0083 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 2.0e-11 72.4 73 49.3
vmacro02862 Vaccinium macrocarpon HOM05D004391 ORTHO05D005193 2.0e-11 72.4 52 63.5
CSS0038074 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 2.6e-11 72.0 52 63.5
TAR369G0568 Trochodendron aralioides HOM05D004391 ORTHO05D005193 2.6e-11 72.0 73 50.7
CiPaw.05G185700 Carya illinoinensis HOM05D004391 ORTHO05D005193 3.4e-11 71.6 72 50.0
Cc01_g15470 Coffea canephora HOM05D004391 ORTHO05D005193 3.4e-11 71.6 73 49.3
MELO3C010670.2 Cucumis melo HOM05D004391 ORTHO05D005193 4.4e-11 71.2 73 47.9
Gorai.012G013200 Gossypium raimondii HOM05D004391 ORTHO05D005193 4.4e-11 71.2 52 61.5
Sc15g0002370 Simmondsia chinensis HOM05D004391 ORTHO05D005193 4.4e-11 71.2 72 48.6
Cpa.g.sc2.267 Carica papaya HOM05D004391 ORTHO05D005193 5.8e-11 70.9 73 50.7
ClCG08G017940 Citrullus lanatus HOM05D004391 ORTHO05D005193 5.8e-11 70.9 73 46.6
Ciclev10013576m.g Citrus clementina HOM05D004391 ORTHO05D005193 5.8e-11 70.9 73 49.3
Duzib114G0048 Durio zibethinus HOM05D004391 ORTHO05D005193 5.8e-11 70.9 73 47.9
FAN07G1869 Fragaria x ananassa HOM05D004391 ORTHO05D005193 5.8e-11 70.9 52 59.6
FAN17G0118 Fragaria x ananassa HOM05D004391 ORTHO05D005193 5.8e-11 70.9 52 59.6
FAN22G1549 Fragaria x ananassa HOM05D004391 ORTHO05D005193 5.8e-11 70.9 52 59.6
Gohir.A05G404700 Gossypium hirsutum HOM05D004391 ORTHO05D005193 7.6e-11 70.5 73 49.3
Gohir.D13G008800 Gossypium hirsutum HOM05D004391 ORTHO05D005193 7.6e-11 70.5 73 49.3
Gorai.013G009600 Gossypium raimondii HOM05D004391 ORTHO05D005193 7.6e-11 70.5 87 44.8
QL03p059558 Quercus lobata HOM05D004391 ORTHO05D005193 7.6e-11 70.5 52 61.5
CSS0036971 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 9.9e-11 70.1 73 47.9
Ciclev10010097m.g Citrus clementina HOM05D004391 ORTHO05D005193 9.9e-11 70.1 73 49.3
Ciclev10033444m.g Citrus clementina HOM05D004391 ORTHO05D005193 9.9e-11 70.1 73 49.3
RcHm_v2.0_Chr5g0073771 Rosa chinensis HOM05D004391 ORTHO05D005193 9.9e-11 70.1 36 83.3
BolC2t06197H Brassica oleracea HOM05D004391 ORTHO05D005193 1.3e-10 69.7 32 93.8
CsaV3_2G024700 Cucumis sativus L. HOM05D004391 ORTHO05D005193 1.3e-10 69.7 87 43.7
VMungo0647G0523 Vigna mungo HOM05D004391 ORTHO05D005193 1.3e-10 69.7 52 61.5
Gohir.A13G008200 Gossypium hirsutum HOM05D004391 ORTHO05D005193 1.7e-10 69.3 73 49.3
Gohir.D04G011000 Gossypium hirsutum HOM05D004391 ORTHO05D005193 1.7e-10 69.3 73 49.3
FvH4_4g32870 Fragaria vesca HOM05D004391 ORTHO05D005193 2.2e-10 68.9 73 46.6
FAN12G3281 Fragaria x ananassa HOM05D004391 ORTHO05D005193 2.2e-10 68.9 73 46.6
Migut.D00804 Erythranthe guttata HOM05D004391 ORTHO05D005193 3.8e-10 68.2 73 50.7
Nn5g27585 Nelumbo nucifera HOM05D004391 ORTHO05D005193 3.8e-10 68.2 73 47.9
Glyma.14G206700 Glycine max HOM05D004391 ORTHO05D005193 4.9e-10 67.8 73 46.6
Hma1.2p1_0170F.1_g075340 Hydrangea macrophylla HOM05D004391 ORTHO05D005193 4.9e-10 67.8 73 47.9
Os06g0175900 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 4.9e-10 67.8 52 57.7
Os06g0177000 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 4.9e-10 67.8 52 57.7
Ah.05g177740 Amaranthus hybridus HOM05D004391 ORTHO05D005193 6.4e-10 67.4 52 59.6
Glyma.02G237700 Glycine max HOM05D004391 ORTHO05D005193 6.4e-10 67.4 73 46.6
Zm00001eb281780 Zea mays HOM05D004391 ORTHO05D005193 6.4e-10 67.4 52 57.7
Zm00001eb375180 Zea mays HOM05D004391 ORTHO05D005193 6.4e-10 67.4 52 57.7
COL.COLO4_19488 Corchorus olitorius HOM05D004391 ORTHO05D005193 1.1e-09 66.6 73 47.9
GSVIVG01024232001 Vitis vinifera HOM05D004391 ORTHO05D005193 1.1e-09 66.6 73 46.6
FvH4_3g40960 Fragaria vesca HOM05D004391 ORTHO05D005193 1.4e-09 66.2 36 77.8
FAN11G0346 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.4e-09 66.2 36 77.8
FAN16G3113 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.4e-09 66.2 36 77.8
SHI19278 Sapria himalayana HOM05D004391 ORTHO05D005193 1.4e-09 66.2 52 55.8
unitig_747.g21439 Utricularia gibba HOM05D001024 ORTHO05D000878 1.4e-09 66.2 73 46.6
Sed0004860 Sechium edule HOM05D004391 ORTHO05D005193 1.9e-09 65.9 73 46.6
FAN25G0672 Fragaria x ananassa HOM05D004391 ORTHO05D000090 3.2e-09 65.1 82 47.6
Phvul.008G244100 Phaseolus vulgaris HOM05D004391 ORTHO05D005193 3.2e-09 65.1 73 45.2
Thecc.10G186500 Theobroma cacao HOM05D004391 ORTHO05D005193 3.2e-09 65.1 73 43.8
HPP92_000080 Vanilla planifolia HOM05D004391 ORTHO05D005193 3.2e-09 65.1 72 47.2
HPP92_003137 Vanilla planifolia HOM05D004391 ORTHO05D005193 3.2e-09 65.1 73 45.2
GSVIVG01024535001 Vitis vinifera HOM05D004391 ORTHO05D005193 3.2e-09 65.1 73 45.2
C02p02320 Brassica napus HOM05D004391 ORTHO05D005193 4.2e-09 64.7 29 96.6
LjContig00141g0006354 Lotus japonicus HOM05D004391 ORTHO05D005193 4.2e-09 64.7 73 43.8
MD13G1094500 Malus domestica HOM05D004391 ORTHO05D005193 4.2e-09 64.7 73 46.6
Prupe.1G250900 Prunus persica HOM05D004391 ORTHO05D005193 4.2e-09 64.7 73 43.8
TPR.G7542 Trifolium pratense HOM05D004391 ORTHO05D005193 7.1e-09 63.9 73 43.8
MD16G1095600 Malus domestica HOM05D004391 ORTHO05D005193 1.2e-08 63.2 73 45.2
Medtr5g075690 Medicago truncatula HOM05D004391 ORTHO05D005193 1.2e-08 63.2 52 55.8
AUR62013781 Chenopodium quinoa HOM05D004391 ORTHO05D005193 1.6e-08 62.8 52 55.8
AUR62023375 Chenopodium quinoa HOM05D004391 ORTHO05D005193 1.6e-08 62.8 52 55.8
Lalb_Chr04g0251641 Lupinus albus HOM05D004391 ORTHO05D005193 1.6e-08 62.8 73 45.2
Lalb_Chr10g0103971 Lupinus albus HOM05D004391 ORTHO05D005193 1.6e-08 62.8 73 43.8
ECA236G4577 Erigeron canadensis HOM05D004391 ORTHO05D005193 2.7e-08 62.0 52 55.8
FAN21G2439 Fragaria x ananassa HOM05D004391 ORTHO05D005193 2.7e-08 62.0 36 75.0
EL10Ac1g00726 Beta vulgaris HOM05D004391 ORTHO05D005193 4.6e-08 61.2 52 57.7
SalBow3G4275 Salvia bowleyana HOM05D004391 ORTHO05D005193 4.6e-08 61.2 77 45.5
arahy.Tifrunner.gnm1.ann1.M2MMUV Arachis hypogaea HOM05D004391 ORTHO05D005193 6.0e-08 60.8 73 45.2
HanXRQChr10g0292911 Helianthus annuus HOM05D004391 ORTHO05D005193 7.8e-08 60.5 52 51.9
Lsat_1_v5_gn_9_13340 Lactuca sativa HOM05D004391 ORTHO05D005193 7.8e-08 60.5 52 53.8
Lsat_1_v5_gn_9_13380 Lactuca sativa HOM05D000838 ORTHO05D000656 7.8e-08 60.5 52 53.8
FvH4_4g07960 Fragaria vesca HOM05D004391 ORTHO05D005193 1.0e-07 60.1 36 72.2
SGA_v2.0_scaffold122G33334 Striga asiatica HOM05D004391 ORTHO05D005193 1.3e-07 59.7 52 57.7
SGA_v2.0_scaffold129G34161 Striga asiatica HOM05D004391 ORTHO05D005193 1.3e-07 59.7 52 57.7
Aqoxy2G00689 Aquilegia oxysepala HOM05D004391 ORTHO05D005193 3.9e-07 58.2 73 45.2
Lsat_1_v5_gn_8_98901 Lactuca sativa HOM05D004391 ORTHO05D005193 3.9e-07 58.2 36 72.2
Lsat_1_v5_gn_5_177220 Lactuca sativa HOM05D004391 ORTHO05D005193 5.1e-07 57.8 52 50.0
Lsat_1_v5_gn_8_98921 Lactuca sativa HOM05D004391 ORTHO05D005193 8.7e-07 57.0 36 69.4
HanXRQChr05g0158631 Helianthus annuus HOM05D004391 ORTHO05D005193 1.9e-06 55.8 52 46.2
ECA248G3374 Erigeron canadensis HOM05D004391 ORTHO05D005193 3.3e-06 55.1 73 39.7


User provided reference genes

Program Settings