Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 2.7e-155 552.0 279 100.0
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 1.2e-136 490.0 279 90.3
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 5.2e-135 484.6 277 89.5
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 2.2e-133 479.2 277 88.8
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 2.8e-128 462.2 280 86.4
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 7.1e-124 447.6 279 83.9
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.6e-123 446.4 279 83.5
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 1.6e-120 436.4 279 82.8
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 8.1e-120 434.1 279 83.2
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 8.9e-119 430.6 277 81.6
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 3.6e-112 408.7 261 82.4
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 6.4e-109 397.9 276 75.7
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 2.3e-106 389.4 279 72.0
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 5.5e-92 341.7 277 63.2
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 5.5e-92 341.7 278 64.7
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 1.2e-91 340.5 256 68.0
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 1.2e-91 340.5 277 63.2
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 7.9e-91 337.8 201 88.1
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 1.1e-89 334.0 277 61.7
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.9e-89 333.2 277 64.3
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 5.7e-89 331.6 276 61.6
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 9.6e-89 330.9 276 61.6
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 9.6e-89 330.9 282 61.3
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 1.6e-88 330.1 277 60.6
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 2.8e-88 329.3 281 61.2
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 2.8e-88 329.3 240 69.6
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 3.7e-88 328.9 279 62.7
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 8.2e-88 327.8 254 67.7
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 1.1e-87 327.4 255 66.7
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 4.1e-87 325.5 254 66.9
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 5.3e-87 325.1 265 64.2
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 1.2e-86 323.9 240 69.2
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.2e-86 323.9 240 69.2
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 1.2e-86 323.9 256 63.7
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 2.0e-86 323.2 278 61.5
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 2.6e-86 322.8 278 61.9
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 3.4e-86 322.4 255 64.3
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 4.5e-86 322.0 267 62.2
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 4.5e-86 322.0 278 60.1
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 5.9e-86 321.6 231 68.4
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 5.9e-86 321.6 207 75.8
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 5.9e-86 321.6 256 63.7
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 5.9e-86 321.6 234 69.2
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 5.9e-86 321.6 236 67.4
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 7.6e-86 321.2 271 61.6
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 7.6e-86 321.2 237 66.7
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 7.6e-86 321.2 236 69.9
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 7.6e-86 321.2 282 61.7
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 1.0e-85 320.9 256 64.8
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 1.3e-85 320.5 210 72.4
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 1.1e-84 317.4 276 59.8
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 1.1e-84 317.4 256 63.7
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 1.4e-84 317.0 276 58.3
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 1.4e-84 317.0 254 63.8
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.9e-84 316.6 234 68.8
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 1.9e-84 316.6 261 62.5
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 2.5e-84 316.2 244 64.8
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 3.2e-84 315.8 255 63.1
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 3.2e-84 315.8 234 67.1
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 3.2e-84 315.8 234 66.7
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 4.2e-84 315.5 271 60.1
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 4.2e-84 315.5 234 67.9
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 5.5e-84 315.1 276 60.1
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 5.5e-84 315.1 255 62.4
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 7.2e-84 314.7 235 65.5
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 7.2e-84 314.7 231 69.3
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 9.3e-84 314.3 255 63.5
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.2e-83 313.9 207 74.4
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 1.2e-83 313.9 236 66.5
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 1.6e-83 313.5 277 59.6
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 2.1e-83 313.2 239 66.1
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 2.1e-83 313.2 256 62.9
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 2.1e-83 313.2 209 72.7
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 2.1e-83 313.2 233 67.8
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 3.6e-83 312.4 205 73.7
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 3.6e-83 312.4 281 59.1
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 3.6e-83 312.4 210 72.4
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 3.6e-83 312.4 233 67.8
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 7.9e-83 311.2 271 62.0
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 1.3e-82 310.5 204 73.5
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 1.3e-82 310.5 234 65.8
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 2.3e-82 309.7 233 67.4
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 3.0e-82 309.3 210 71.9
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 3.0e-82 309.3 255 62.7
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 8.7e-82 307.8 213 70.9
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 8.7e-82 307.8 277 58.1
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 1.5e-81 307.0 204 74.5
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.9e-81 306.6 207 73.4
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.9e-81 306.6 229 68.1
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 1.9e-81 306.6 230 66.5
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 2.5e-81 306.2 284 59.5
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 3.3e-81 305.8 236 64.4
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.8e-80 302.8 215 77.2
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 3.7e-80 302.4 231 65.8
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 6.3e-80 301.6 213 70.0
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 6.3e-80 301.6 223 67.7
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 1.8e-79 300.1 255 60.0
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 2.4e-79 299.7 277 55.6
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 2.6e-78 296.2 234 63.7
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 2.2e-77 293.1 250 58.8
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 2.9e-77 292.7 204 70.6
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 2.5e-76 289.7 210 67.6
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 7.2e-76 288.1 249 59.8
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.4e-74 283.9 196 70.9
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.3e-74 283.1 229 63.8
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 3.0e-74 282.7 210 64.3
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 3.0e-74 282.7 205 69.8
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 5.1e-74 282.0 229 63.3
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 2.6e-73 279.6 254 55.9
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 6.3e-72 275.0 240 60.4
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 1.1e-71 274.2 225 58.7
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 1.0e-69 267.7 208 61.5
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 1.9e-68 263.5 206 59.7
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 3.2e-68 262.7 241 59.3
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 4.2e-68 262.3 266 51.9
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 7.7e-62 241.5 201 61.7
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.1e-60 237.7 218 58.7
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 5.5e-60 235.3 209 54.1
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 2.6e-57 226.5 208 52.4
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 4.4e-57 225.7 182 65.9
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 2.2e-56 223.4 221 47.5
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 1.6e-54 217.2 234 48.7
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 2.2e-53 213.4 210 50.0
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 1.9e-52 210.3 193 55.4
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 4.8e-48 195.7 162 64.8
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 4.5e-46 189.1 233 38.6
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 8.0e-43 178.3 216 41.2
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 8.8e-42 174.9 119 67.2
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 2.7e-38 163.3 109 72.5
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 4.3e-28 129.4 119 60.5
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 2.3e-26 123.6 85 70.6
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 5.2e-26 122.5 130 52.3
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 1.7e-21 107.5 144 40.3
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 3.9e-21 106.3 88 63.6
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 3.9e-21 106.3 85 61.2
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 2.1e-14 84.0 57 71.9
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 6.0e-14 82.4 248 31.5
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 4.0e-10 69.7 111 42.3
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 4.9e-08 62.8 87 40.2
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 8.4e-08 62.0 44 68.2


User provided reference genes

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