Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 1.5e-144 516.2 261 100.0
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 4.1e-142 508.1 260 98.5
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 4.1e-142 508.1 260 98.5
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 5.4e-142 507.7 261 98.1
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 5.4e-142 507.7 261 98.1
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 7.0e-142 507.3 260 98.5
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 9.2e-142 506.9 261 97.7
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 1.2e-141 506.5 259 98.8
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 1.2e-141 506.5 259 98.8
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.1e-134 483.4 261 93.1
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.4e-134 483.0 261 92.3
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 3.2e-134 481.9 261 93.5
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 7.1e-134 480.7 261 93.1
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 3.5e-133 478.4 261 93.1
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 91.6
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 91.2
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 89.3
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 5.6e-131 471.1 261 88.9
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 7.3e-131 470.7 261 89.7
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 2.1e-130 469.2 261 90.8
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 2.1e-130 469.2 261 89.3
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 3.6e-130 468.4 261 90.4
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 3.6e-130 468.4 261 88.5
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 4.7e-130 468.0 261 89.7
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 4.7e-130 468.0 261 89.7
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 4.7e-130 468.0 261 88.9
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 8.1e-130 467.2 261 88.9
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 8.1e-130 467.2 261 88.9
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 8.1e-130 467.2 261 88.9
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.4e-129 466.5 261 88.9
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 89.7
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 88.1
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 88.1
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 88.1
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 2.3e-129 465.7 261 89.3
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 2.3e-129 465.7 261 88.1
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 3.1e-129 465.3 261 88.1
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 4.0e-129 464.9 261 89.3
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 4.0e-129 464.9 261 89.3
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 88.1
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 88.9
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 88.1
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 88.1
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 87.4
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 88.1
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 88.1
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 1.2e-128 463.4 261 88.9
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.5e-128 463.0 261 88.1
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 1.5e-128 463.0 260 88.5
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 1.5e-128 463.0 261 88.9
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 2.0e-128 462.6 261 88.9
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 2.0e-128 462.6 261 88.5
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 2.0e-128 462.6 261 88.5
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.0e-128 462.6 261 87.0
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 2.0e-128 462.6 261 88.1
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 2.0e-128 462.6 261 87.7
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 88.9
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 3.4e-128 461.8 261 88.1
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 3.4e-128 461.8 261 87.4
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 3.4e-128 461.8 260 89.2
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 4.4e-128 461.5 261 88.1
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 4.4e-128 461.5 261 88.5
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 5.8e-128 461.1 258 89.5
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 5.8e-128 461.1 261 87.7
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 7.6e-128 460.7 261 87.0
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 9.9e-128 460.3 261 88.1
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 9.9e-128 460.3 261 88.9
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 1.3e-127 459.9 261 87.7
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 1.3e-127 459.9 260 88.1
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 2.2e-127 459.1 261 86.2
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 4.9e-127 458.0 260 87.7
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 4.9e-127 458.0 261 88.5
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 6.4e-127 457.6 261 87.4
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 6.4e-127 457.6 261 87.0
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 6.4e-127 457.6 261 86.6
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 8.4e-127 457.2 261 86.6
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 8.4e-127 457.2 261 87.4
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 8.4e-127 457.2 261 88.1
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 1.1e-126 456.8 261 87.0
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 1.1e-126 456.8 261 87.0
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 1.1e-126 456.8 261 87.4
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 1.1e-126 456.8 265 87.2
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 1.4e-126 456.4 261 86.6
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 1.4e-126 456.4 261 87.4
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 1.4e-126 456.4 261 87.4
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.4e-126 456.4 261 87.0
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 1.4e-126 456.4 261 87.0
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 1.9e-126 456.1 261 86.2
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 2.4e-126 455.7 260 86.5
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 2.4e-126 455.7 261 86.6
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 4.1e-126 454.9 261 86.2
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 4.1e-126 454.9 261 87.0
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 4.1e-126 454.9 260 87.3
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 7.1e-126 454.1 264 87.5
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 7.1e-126 454.1 261 86.2
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 9.2e-126 453.8 261 87.0
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.2e-125 453.4 261 87.0
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 1.2e-125 453.4 261 86.6
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 1.6e-125 453.0 261 85.1
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 2.1e-125 452.6 261 85.4
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 2.1e-125 452.6 261 85.8
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 2.7e-125 452.2 261 85.1
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 2.7e-125 452.2 261 86.6
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 3.5e-125 451.8 261 86.2
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 4.6e-125 451.4 261 85.8
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 4.6e-125 451.4 261 85.8
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 4.6e-125 451.4 261 85.8
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 4.6e-125 451.4 285 81.1
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.0e-124 450.3 256 86.3
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 1.0e-124 450.3 259 88.4
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 1.0e-124 450.3 261 85.4
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 1.0e-124 450.3 261 85.4
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 3.0e-124 448.7 261 85.1
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 3.9e-124 448.4 261 85.8
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 6.6e-124 447.6 261 85.1
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 1.1e-123 446.8 260 86.2
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 3.3e-123 445.3 261 84.7
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 5.6e-123 444.5 261 85.1
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 7.3e-123 444.1 269 83.6
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 1.2e-122 443.4 261 83.9
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 1.2e-122 443.4 261 83.5
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 2.1e-122 442.6 276 81.2
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 2.1e-122 442.6 256 85.2
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 2.8e-122 442.2 261 83.5
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 6.2e-122 441.0 261 83.9
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 7.6e-120 434.1 261 80.8
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.8e-119 431.8 277 79.8
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 1.2e-117 426.8 261 82.0
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.6e-117 426.4 240 88.8
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 2.1e-117 426.0 261 79.3
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 4.6e-117 424.9 261 81.2
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 4.6e-117 424.9 261 81.2
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 9.6e-115 417.2 261 76.6
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 1.1e-113 413.7 261 78.9
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 6.9e-113 411.0 261 75.9
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.2e-112 410.2 241 84.6
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.4e-112 408.7 241 84.2
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.7e-111 406.4 261 80.5
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 3.0e-108 395.6 213 91.1
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 9.6e-107 390.6 261 78.2
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 8.1e-106 387.5 222 87.4
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 9.0e-105 384.0 199 95.5
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 4.5e-104 381.7 263 73.4
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 1.3e-103 380.2 201 91.5
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.7e-103 379.8 309 68.0
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 9.3e-102 374.0 261 75.9
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 4.6e-101 371.7 254 74.8
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.9e-100 368.6 337 60.5
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 8.7e-100 367.5 240 77.1
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 5.6e-99 364.8 195 89.2
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 1.4e-94 350.1 260 66.9
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 3.9e-92 342.0 257 73.5
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.2e-86 322.4 177 87.0
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 3.3e-83 312.4 161 93.2
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 7.7e-72 274.6 229 59.4
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 2.3e-68 263.1 143 97.2
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 3.9e-68 262.3 240 60.0
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 2.0e-67 260.0 142 96.5
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.6e-56 223.8 113 92.9
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 5.7e-51 205.3 135 80.0
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 9.1e-49 198.0 98 92.9
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 1.1e-41 174.5 140 66.4
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 1.8e-41 173.7 196 52.6
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 9.2e-41 171.4 100 95.0
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 2.9e-39 166.4 108 75.9
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 4.3e-38 162.5 271 43.5
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 1.6e-37 160.6 135 62.2
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 1.8e-36 157.1 92 81.5
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 2.9e-34 149.8 197 46.7
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 1.8e-28 130.6 81 82.7
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 1.5e-27 127.5 91 71.4
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 4.3e-22 109.4 111 58.6
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 1.6e-16 90.9 64 70.3
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 2.3e-12 77.0 81 55.6
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 1.5e-11 74.3 85 52.9
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 1.4e-09 67.8 34 100.0
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 1.9e-09 67.4 38 86.8
BolC4t24585H Brassica oleracea HOM05D002284 ORTHO05D033292 2.7e-08 63.5 34 94.1
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 2.7e-08 63.5 59 57.6
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 3.5e-08 63.2 42 78.6
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 2.3e-07 60.5 56 57.1
BcaC02g10305 Brassica carinata HOM05D002284 ORTHO05D002427 4.3e-06 56.2 31 90.3


User provided reference genes

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