Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21635 Brassica carinata HOM05D005878 ORTHO05D007433 7.2e-113 410.6 210 100.0
BcaC03g13174 Brassica carinata HOM05D005878 ORTHO05D007433 7.2e-113 410.6 210 100.0
BolC2t06258H Brassica oleracea HOM05D005878 ORTHO05D007433 7.2e-113 410.6 210 100.0
C02p02970 Brassica napus HOM05D005878 ORTHO05D007433 6.5e-106 387.5 205 97.1
BcaC06g32524 Brassica carinata HOM05D005878 ORTHO05D007433 5.9e-99 364.4 205 91.2
BcaB05g21633 Brassica carinata HOM05D005878 ORTHO05D007433 2.3e-98 362.5 205 92.7
A10p28810 Brassica napus HOM05D005878 ORTHO05D007433 1.5e-97 359.8 205 90.2
BcaNung04204 Brassica carinata HOM05D005878 ORTHO05D007433 1.9e-97 359.4 205 90.2
C09p69150 Brassica napus HOM05D005878 ORTHO05D007433 1.9e-97 359.4 205 90.2
BraA10t44928Z Brassica rapa HOM05D005878 ORTHO05D007433 1.9e-97 359.4 205 90.2
BolC9t59659H Brassica oleracea HOM05D005878 ORTHO05D007433 5.5e-97 357.8 205 89.8
BraA02t04902Z Brassica rapa HOM05D005878 ORTHO05D007433 5.5e-97 357.8 215 87.9
Sp6g35860 Schrenkiella parvula HOM05D005878 ORTHO05D007433 3.0e-95 352.1 203 91.6
CARHR206130 Cardamine hirsuta HOM05D005878 ORTHO05D007433 1.3e-90 336.7 203 87.2
Thhalv10014567m.g Eutrema salsugineum HOM05D005878 ORTHO05D007433 2.3e-90 335.9 206 87.4
AL6G17170 Arabidopsis lyrata HOM05D005878 ORTHO05D007433 1.2e-88 330.1 196 88.3
Carub.0006s0594 Capsella rubella HOM05D005878 ORTHO05D007433 1.4e-87 326.6 200 86.5
AT5G07020 Arabidopsis thaliana HOM05D005878 ORTHO05D007433 4.0e-87 325.1 200 85.5
THA.LOC104799332 Tarenaya hassleriana HOM05D005878 ORTHO05D007433 2.1e-75 286.2 206 73.8
Manes.11G008200 Manihot esculenta HOM05D005878 ORTHO05D007433 7.1e-68 261.2 204 69.1
Gohir.A05G398900 Gossypium hirsutum HOM05D005878 ORTHO05D007433 6.6e-66 254.6 211 65.4
TAR633G2731 Trochodendron aralioides HOM05D005878 ORTHO05D007433 6.6e-66 254.6 205 63.9
CiPaw.14G010200 Carya illinoinensis HOM05D005878 ORTHO05D007433 4.3e-65 251.9 193 67.9
Gorai.012G019700 Gossypium raimondii HOM05D005878 ORTHO05D007433 9.6e-65 250.8 211 64.9
COL.COLO4_05616 Corchorus olitorius HOM05D005878 ORTHO05D007433 3.6e-64 248.8 209 65.6
Thecc.10G140600 Theobroma cacao HOM05D005878 ORTHO05D007433 4.7e-64 248.4 205 62.4
arahy.Tifrunner.gnm1.ann1.7Y8XE1 Arachis hypogaea HOM05D005878 ORTHO05D007433 1.4e-63 246.9 177 73.4
Phvul.005G018300 Phaseolus vulgaris HOM05D005878 ORTHO05D007433 1.8e-63 246.5 194 66.0
Gohir.D04G017000 Gossypium hirsutum HOM05D005878 ORTHO05D007433 2.4e-63 246.1 211 63.5
Glyma.04G132400 Glycine max HOM05D005878 ORTHO05D007433 3.1e-63 245.7 205 64.9
TAR636G2836 Trochodendron aralioides HOM05D005878 ORTHO05D007433 3.1e-63 245.7 208 62.5
arahy.Tifrunner.gnm1.ann1.RJ91AH Arachis hypogaea HOM05D005878 ORTHO05D007433 5.2e-63 245.0 200 66.0
Eucgr.G03205 Eucalyptus grandis HOM05D005878 ORTHO05D007433 5.2e-63 245.0 210 64.8
TWI38G1150 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 5.2e-63 245.0 207 63.3
Cfa010961 Carpinus fangiana HOM05D005878 ORTHO05D007433 8.9e-63 244.2 204 64.2
Lalb_Chr01g0007451 Lupinus albus HOM05D005878 ORTHO05D007433 8.9e-63 244.2 168 75.6
MBI03_g46805_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 1.2e-62 243.8 202 61.4
CANSAT01G2833 Cannabis sativa HOM05D005878 ORTHO05D007433 2.0e-62 243.0 202 67.8
MBI03_g45113_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 2.0e-62 243.0 202 61.4
FAN01G0732 Fragaria x ananassa HOM05D005878 ORTHO05D007433 2.6e-62 242.7 204 62.7
MELO3C012494.2 Cucumis melo HOM05D005878 ORTHO05D007433 3.4e-62 242.3 204 63.7
Dinv02557 Davidia involucrata HOM05D005878 ORTHO05D007433 4.4e-62 241.9 192 65.6
Glyma.06G309000 Glycine max HOM05D005878 ORTHO05D007433 4.4e-62 241.9 173 73.4
CsaV3_5G036960 Cucumis sativus L. HOM05D005878 ORTHO05D007433 5.8e-62 241.5 192 66.7
VMungo1080G0593 Vigna mungo HOM05D005878 ORTHO05D007433 5.8e-62 241.5 202 64.9
Prupe.2G044200 Prunus persica HOM05D005878 ORTHO05D007433 7.6e-62 241.1 204 64.7
FAN06G2676 Fragaria x ananassa HOM05D005878 ORTHO05D007433 9.9e-62 240.7 204 62.3
RcHm_v2.0_Chr1g0327631 Rosa chinensis HOM05D005878 ORTHO05D007433 9.9e-62 240.7 166 75.9
QL04p021553 Quercus lobata HOM05D005878 ORTHO05D007433 1.3e-61 240.4 206 60.2
MD00G1152600 Malus domestica HOM05D005878 ORTHO05D007433 2.2e-61 239.6 156 77.6
Ciclev10002378m.g Citrus clementina HOM05D005878 ORTHO05D007433 4.9e-61 238.4 211 62.6
ClCG05G027000 Citrullus lanatus HOM05D005878 ORTHO05D007433 6.4e-61 238.0 204 62.7
FvH4_7g03940 Fragaria vesca HOM05D005878 ORTHO05D007433 8.4e-61 237.7 204 61.8
Hund13399 Selenicereus undatus HOM05D005878 ORTHO05D007433 8.4e-61 237.7 204 65.7
Nitab4.5_0002838g0030 Nicotiana tabacum HOM05D005878 ORTHO05D007433 1.4e-60 236.9 200 65.0
Duzib114G0830 Durio zibethinus HOM05D005878 ORTHO05D007433 1.9e-60 236.5 200 64.5
MD07G1043600 Malus domestica HOM05D005878 ORTHO05D007433 3.2e-60 235.7 179 68.2
Peaxi162Scf00220g00235 Petunia axillaris HOM05D005878 ORTHO05D007433 3.2e-60 235.7 208 63.0
Actinidia01690 Actinidia chinensis HOM05D005878 ORTHO05D007433 4.2e-60 235.3 168 73.2
Nitab4.5_0004168g0090 Nicotiana tabacum HOM05D005878 ORTHO05D007433 5.4e-60 235.0 214 62.1
Aqoxy2G00498 Aquilegia oxysepala HOM05D005878 ORTHO05D007433 1.2e-59 233.8 206 62.6
PGR031G0581 Punica granatum HOM05D005878 ORTHO05D007433 1.2e-59 233.8 212 62.7
PGSC0003DMG400003288 Solanum tuberosum HOM05D005878 ORTHO05D007433 1.2e-59 233.8 172 72.7
Ca_14245_v3 Cicer arietinum L. HOM05D005878 ORTHO05D007433 2.1e-59 233.0 167 75.4
Nn7g36933 Nelumbo nucifera HOM05D005878 ORTHO05D007433 2.1e-59 233.0 205 62.4
Solyc01g096660.3 Solanum lycopersicum HOM05D005878 ORTHO05D007433 2.1e-59 233.0 172 73.8
Potri.003G192800 Populus trichocarpa HOM05D005878 ORTHO05D007433 2.7e-59 232.6 204 60.8
Migut.B01182 Erythranthe guttata HOM05D005878 ORTHO05D007433 4.6e-59 231.9 200 63.5
Dinv32002 Davidia involucrata HOM05D005878 ORTHO05D007433 7.8e-59 231.1 212 60.8
Sopen01g040380 Solanum pennellii HOM05D005878 ORTHO05D007433 7.8e-59 231.1 172 72.7
Haze_02979 Corylus avellana HOM05D005878 ORTHO05D007433 1.0e-58 230.7 222 57.7
Lj3g0011478 Lotus japonicus HOM05D005878 ORTHO05D007433 1.0e-58 230.7 205 62.4
Medtr3g013460 Medicago truncatula HOM05D005878 ORTHO05D007433 1.0e-58 230.7 193 66.3
CSS0046372 Camellia sinensis var. sinensis HOM05D005878 ORTHO05D007433 2.3e-58 229.6 152 75.0
Cc00_g09800 Coffea canephora HOM05D005878 ORTHO05D007433 1.1e-57 227.3 196 63.3
SalBow2G0433 Salvia bowleyana HOM05D005878 ORTHO05D007433 1.1e-57 227.3 168 69.6
SalBow2G2419 Salvia bowleyana HOM05D005878 ORTHO05D007433 1.1e-57 227.3 168 69.6
PSO339G1146 Papaver somniferum HOM05D005878 ORTHO05D007433 1.9e-57 226.5 206 59.7
Actinidia01520 Actinidia chinensis HOM05D005878 ORTHO05D007433 3.3e-57 225.7 211 57.8
TWI15G0528 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 4.3e-57 225.3 189 63.5
Sed0004070 Sechium edule HOM05D005878 ORTHO05D007433 5.6e-57 224.9 192 60.9
ATR1136G020 Amborella trichopoda HOM05D005878 ORTHO05D007433 7.3e-57 224.6 200 59.5
ECA248G2695 Erigeron canadensis HOM05D005878 ORTHO05D007433 7.3e-57 224.6 169 69.8
EL10Ac2g02748 Beta vulgaris HOM05D005878 ORTHO05D007433 1.6e-56 223.4 159 72.3
MSTRG.16973 Avicennia marina HOM05D005878 ORTHO05D007433 2.1e-56 223.0 169 65.1
Oeu006783.1 Olea europaea HOM05D005878 ORTHO05D007433 2.8e-56 222.6 197 60.9
AUR62032609 Chenopodium quinoa HOM05D005878 ORTHO05D007433 4.8e-56 221.9 150 76.7
PSO384G4469 Papaver somniferum HOM05D005878 ORTHO05D007433 4.8e-56 221.9 206 59.2
DCAR_006594 Daucus carota HOM05D005878 ORTHO05D007433 1.1e-55 220.7 228 57.9
Aa31sc25G160 Aethionema arabicum HOM05D005878 ORTHO05D007433 1.8e-55 219.9 135 81.5
Rhsim10G0180100 Rhododendron simsii HOM05D005878 ORTHO05D007433 2.4e-55 219.5 163 73.0
Sc14g0005230 Simmondsia chinensis HOM05D005878 ORTHO05D007433 3.1e-55 219.2 207 59.9
Lsat_1_v5_gn_9_74980 Lactuca sativa HOM05D005878 ORTHO05D007433 1.2e-54 217.2 149 74.5
GSVIVG01036595001 Vitis vinifera HOM05D005878 ORTHO05D007433 5.8e-54 214.9 205 58.5
HPP92_016121 Vanilla planifolia HOM05D005878 ORTHO05D007433 7.1e-52 208.0 176 63.1
HanXRQChr11g0341301 Helianthus annuus HOM05D005878 ORTHO05D007433 2.1e-51 206.5 164 68.3
Zm00001eb182020 Zea mays HOM05D005878 ORTHO05D007433 7.8e-51 204.5 205 54.1
vmacro20585 Vaccinium macrocarpon HOM05D005878 ORTHO05D007433 1.0e-50 204.1 194 60.8
FAN03G0529 Fragaria x ananassa HOM05D005878 ORTHO05D007433 3.0e-50 202.6 198 58.6
CDE08G0208 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 6.6e-50 201.4 205 52.7
unitig_22.g5332 Utricularia gibba HOM05D005878 ORTHO05D007433 6.6e-50 201.4 211 55.5
CDE02G0435 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 1.5e-49 200.3 204 53.4
A03p56860 Brassica napus HOM05D005878 ORTHO05D007433 9.6e-49 197.6 132 81.8
Os02g0556800 Oryza sativa ssp. japonica HOM05D005878 ORTHO05D007433 6.2e-48 194.9 148 66.9
BcaC03g13176 Brassica carinata HOM05D005878 ORTHO05D007433 8.1e-48 194.5 104 92.3
AUR62001069 Chenopodium quinoa HOM05D005878 ORTHO05D007433 4.0e-47 192.2 158 65.8
AagrBONN_evm.TU.Sc2ySwM_117.450 Anthoceros agrestis HOM05D005878 ORTHO05D007433 9.9e-46 187.6 163 59.5
TPR.G1450 Trifolium pratense HOM05D005878 ORTHO05D007433 9.9e-46 187.6 138 72.5
Lj9A656G41 Lonicera japonica HOM05D005878 ORTHO05D007433 2.2e-45 186.4 128 75.0
Hma1.2p1_0233F.1_g098360 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 3.8e-45 185.7 127 71.7
SGA_v2.0_scaffold430G51553 Striga asiatica HOM05D005878 ORTHO05D007433 4.9e-45 185.3 150 64.7
SEGI_13955 Sequoiadendron giganteum HOM05D005878 ORTHO05D007433 1.9e-44 183.3 202 50.5
Cpa.g.sc188.4 Carica papaya HOM05D005878 ORTHO05D007433 7.1e-44 181.4 117 77.8
Atru.chr12.1246 Acer truncatum HOM05D005878 ORTHO05D007433 9.3e-44 181.0 165 63.6
AagrBONN_evm.TU.Sc2ySwM_117.1283 Anthoceros agrestis HOM05D005878 ORTHO05D007433 2.1e-43 179.9 164 60.4
Psat5g223120 Pisum sativum HOM05D005878 ORTHO05D007433 8.7e-42 174.5 205 51.7
Mapoly0116s0014 Marchantia polymorpha HOM05D005878 ORTHO05D007433 5.6e-41 171.8 170 55.9
Pp3c8_5370 Physcomitrium patens HOM05D005878 ORTHO05D007433 2.8e-40 169.5 166 54.8
Pp3c3_32790 Physcomitrium patens HOM05D005878 ORTHO05D007433 2.4e-39 166.4 223 46.2
SMO143G0125 Selaginella moellendorffii HOM05D005878 ORTHO05D007433 5.3e-39 165.2 181 51.4
Hma1.2p1_0233F.1_g098370 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 1.7e-37 160.2 110 72.7
Eucgr.L03611 Eucalyptus grandis HOM05D005878 ORTHO05D007433 1.4e-28 130.6 110 62.7
TAR628G0990 Trochodendron aralioides HOM05D005878 ORTHO05D007433 2.3e-26 123.2 140 52.1
AUR62031722 Chenopodium quinoa HOM05D005878 ORTHO05D007433 1.1e-25 120.9 164 47.0
Atru.chr2.3038 Acer truncatum HOM05D005878 ORTHO05D007433 4.2e-20 102.4 99 59.6
C07p55210 Brassica napus HOM05D005878 ORTHO05D033170 3.0e-18 96.3 103 61.2
CBR_g50344 Chara braunii HOM05D005878 ORTHO05D007433 8.8e-18 94.7 116 44.8
Atru.chr7.1915 Acer truncatum HOM05D005878 ORTHO05D007433 3.1e-15 86.3 89 53.9
Atru.chr3.2623 Acer truncatum HOM05D005878 ORTHO05D007433 4.1e-15 85.9 83 59.0
Potri.001G032200 Populus trichocarpa HOM05D005878 ORTHO05D007433 1.9e-12 77.0 199 33.7
BolC7t45992H Brassica oleracea HOM05D005878 ORTHO05D033170 7.2e-12 75.1 59 84.7
PGSC0003DMG400040390 Solanum tuberosum HOM05D005878 ORTHO05D007433 9.7e-09 64.7 66 53.0


User provided reference genes

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