Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21633 Brassica carinata HOM05D005878 ORTHO05D007433 1.4e-117 426.4 226 100.0
C02p02970 Brassica napus HOM05D005878 ORTHO05D007433 8.3e-107 390.6 226 93.4
BcaC06g32524 Brassica carinata HOM05D005878 ORTHO05D007433 2.4e-106 389.0 226 92.0
Sp6g35860 Schrenkiella parvula HOM05D005878 ORTHO05D007433 2.5e-103 379.0 227 91.2
BcaNung04204 Brassica carinata HOM05D005878 ORTHO05D007433 3.3e-103 378.6 226 89.8
C09p69150 Brassica napus HOM05D005878 ORTHO05D007433 3.3e-103 378.6 226 89.8
BolC9t59659H Brassica oleracea HOM05D005878 ORTHO05D007433 9.5e-103 377.1 226 89.4
A10p28810 Brassica napus HOM05D005878 ORTHO05D007433 1.6e-102 376.3 226 89.4
BraA10t44928Z Brassica rapa HOM05D005878 ORTHO05D007433 2.1e-102 375.9 226 89.4
BraA02t04902Z Brassica rapa HOM05D005878 ORTHO05D007433 2.0e-100 369.4 234 86.8
BcaB05g21635 Brassica carinata HOM05D005878 ORTHO05D007433 2.7e-97 359.0 205 92.7
BcaC03g13174 Brassica carinata HOM05D005878 ORTHO05D007433 2.7e-97 359.0 205 92.7
BolC2t06258H Brassica oleracea HOM05D005878 ORTHO05D007433 2.7e-97 359.0 205 92.7
Thhalv10014567m.g Eutrema salsugineum HOM05D005878 ORTHO05D007433 5.2e-93 344.7 240 82.5
AL6G17170 Arabidopsis lyrata HOM05D005878 ORTHO05D007433 1.2e-92 343.6 236 82.6
AT5G07020 Arabidopsis thaliana HOM05D005878 ORTHO05D007433 7.6e-92 340.9 236 82.2
CARHR206130 Cardamine hirsuta HOM05D005878 ORTHO05D007433 4.9e-91 338.2 237 81.0
Carub.0006s0594 Capsella rubella HOM05D005878 ORTHO05D007433 2.5e-87 325.9 247 76.1
THA.LOC104799332 Tarenaya hassleriana HOM05D005878 ORTHO05D007433 5.6e-79 298.1 227 74.0
COL.COLO4_05616 Corchorus olitorius HOM05D005878 ORTHO05D007433 5.5e-66 255.0 230 63.9
Manes.11G008200 Manihot esculenta HOM05D005878 ORTHO05D007433 7.1e-66 254.6 204 68.6
TAR633G2731 Trochodendron aralioides HOM05D005878 ORTHO05D007433 2.1e-65 253.1 220 61.4
Gohir.A05G398900 Gossypium hirsutum HOM05D005878 ORTHO05D007433 6.0e-65 251.5 228 63.2
Thecc.10G140600 Theobroma cacao HOM05D005878 ORTHO05D007433 7.9e-65 251.1 226 61.5
CiPaw.14G010200 Carya illinoinensis HOM05D005878 ORTHO05D007433 1.8e-64 250.0 220 62.7
Gorai.012G019700 Gossypium raimondii HOM05D005878 ORTHO05D007433 6.7e-64 248.1 228 62.7
Eucgr.G03205 Eucalyptus grandis HOM05D005878 ORTHO05D007433 8.7e-64 247.7 226 63.3
Gohir.D04G017000 Gossypium hirsutum HOM05D005878 ORTHO05D007433 3.3e-63 245.7 228 61.8
MELO3C012494.2 Cucumis melo HOM05D005878 ORTHO05D007433 5.6e-63 245.0 204 65.2
CsaV3_5G036960 Cucumis sativus L. HOM05D005878 ORTHO05D007433 7.4e-63 244.6 213 62.9
TWI38G1150 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 1.3e-62 243.8 207 63.8
Cfa010961 Carpinus fangiana HOM05D005878 ORTHO05D007433 1.6e-62 243.4 204 64.2
ClCG05G027000 Citrullus lanatus HOM05D005878 ORTHO05D007433 2.1e-62 243.0 211 62.6
arahy.Tifrunner.gnm1.ann1.7Y8XE1 Arachis hypogaea HOM05D005878 ORTHO05D007433 2.8e-62 242.7 197 70.6
Migut.B01182 Erythranthe guttata HOM05D005878 ORTHO05D007433 2.8e-62 242.7 218 62.8
Glyma.04G132400 Glycine max HOM05D005878 ORTHO05D007433 2.8e-62 242.7 205 64.9
TAR636G2836 Trochodendron aralioides HOM05D005878 ORTHO05D007433 2.8e-62 242.7 225 60.0
CANSAT01G2833 Cannabis sativa HOM05D005878 ORTHO05D007433 3.7e-62 242.3 237 62.0
Lalb_Chr01g0007451 Lupinus albus HOM05D005878 ORTHO05D007433 3.7e-62 242.3 186 74.2
MD00G1152600 Malus domestica HOM05D005878 ORTHO05D007433 3.7e-62 242.3 193 70.5
Glyma.06G309000 Glycine max HOM05D005878 ORTHO05D007433 6.2e-62 241.5 201 66.2
Phvul.005G018300 Phaseolus vulgaris HOM05D005878 ORTHO05D007433 6.2e-62 241.5 218 61.0
Duzib114G0830 Durio zibethinus HOM05D005878 ORTHO05D007433 8.1e-62 241.1 225 60.4
arahy.Tifrunner.gnm1.ann1.RJ91AH Arachis hypogaea HOM05D005878 ORTHO05D007433 1.8e-61 240.0 197 70.1
Ciclev10002378m.g Citrus clementina HOM05D005878 ORTHO05D007433 1.8e-61 240.0 230 61.3
FAN01G0732 Fragaria x ananassa HOM05D005878 ORTHO05D007433 2.4e-61 239.6 185 70.8
Prupe.2G044200 Prunus persica HOM05D005878 ORTHO05D007433 2.4e-61 239.6 213 63.4
Lj3g0011478 Lotus japonicus HOM05D005878 ORTHO05D007433 3.1e-61 239.2 215 62.8
QL04p021553 Quercus lobata HOM05D005878 ORTHO05D007433 3.1e-61 239.2 225 58.2
VMungo1080G0593 Vigna mungo HOM05D005878 ORTHO05D007433 3.1e-61 239.2 197 66.5
Dinv02557 Davidia involucrata HOM05D005878 ORTHO05D007433 4.0e-61 238.8 210 62.9
RcHm_v2.0_Chr1g0327631 Rosa chinensis HOM05D005878 ORTHO05D007433 5.3e-61 238.4 190 68.9
Hund13399 Selenicereus undatus HOM05D005878 ORTHO05D007433 9.0e-61 237.7 234 62.0
FAN06G2676 Fragaria x ananassa HOM05D005878 ORTHO05D007433 1.2e-60 237.3 188 69.7
Nitab4.5_0002838g0030 Nicotiana tabacum HOM05D005878 ORTHO05D007433 1.2e-60 237.3 250 56.8
Nitab4.5_0004168g0090 Nicotiana tabacum HOM05D005878 ORTHO05D007433 1.5e-60 236.9 246 56.5
PGSC0003DMG400003288 Solanum tuberosum HOM05D005878 ORTHO05D007433 1.5e-60 236.9 239 59.8
Peaxi162Scf00220g00235 Petunia axillaris HOM05D005878 ORTHO05D007433 2.0e-60 236.5 207 64.3
PGR031G0581 Punica granatum HOM05D005878 ORTHO05D007433 3.4e-60 235.7 230 61.7
Solyc01g096660.3 Solanum lycopersicum HOM05D005878 ORTHO05D007433 4.5e-60 235.3 239 61.5
Cc00_g09800 Coffea canephora HOM05D005878 ORTHO05D007433 7.6e-60 234.6 200 64.0
MBI03_g46805_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 7.6e-60 234.6 232 58.6
FvH4_7g03940 Fragaria vesca HOM05D005878 ORTHO05D007433 1.0e-59 234.2 188 69.1
MBI03_g45113_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 1.3e-59 233.8 232 58.6
Ca_14245_v3 Cicer arietinum L. HOM05D005878 ORTHO05D007433 1.7e-59 233.4 180 74.4
Sopen01g040380 Solanum pennellii HOM05D005878 ORTHO05D007433 1.7e-59 233.4 239 60.7
MD07G1043600 Malus domestica HOM05D005878 ORTHO05D007433 2.2e-59 233.0 217 59.9
ECA248G2695 Erigeron canadensis HOM05D005878 ORTHO05D007433 4.9e-59 231.9 222 60.4
Nn7g36933 Nelumbo nucifera HOM05D005878 ORTHO05D007433 4.9e-59 231.9 223 58.3
Actinidia01690 Actinidia chinensis HOM05D005878 ORTHO05D007433 6.5e-59 231.5 168 72.6
Potri.003G192800 Populus trichocarpa HOM05D005878 ORTHO05D007433 6.5e-59 231.5 211 59.2
CSS0046372 Camellia sinensis var. sinensis HOM05D005878 ORTHO05D007433 1.9e-58 229.9 185 65.9
Dinv32002 Davidia involucrata HOM05D005878 ORTHO05D007433 2.5e-58 229.6 212 61.3
Sed0004070 Sechium edule HOM05D005878 ORTHO05D007433 2.5e-58 229.6 186 64.0
Aqoxy2G00498 Aquilegia oxysepala HOM05D005878 ORTHO05D007433 3.2e-58 229.2 221 57.9
SalBow2G0433 Salvia bowleyana HOM05D005878 ORTHO05D007433 3.2e-58 229.2 182 68.7
SalBow2G2419 Salvia bowleyana HOM05D005878 ORTHO05D007433 3.2e-58 229.2 182 68.7
Haze_02979 Corylus avellana HOM05D005878 ORTHO05D007433 5.5e-58 228.4 238 55.0
Medtr3g013460 Medicago truncatula HOM05D005878 ORTHO05D007433 5.5e-58 228.4 211 61.1
PSO339G1146 Papaver somniferum HOM05D005878 ORTHO05D007433 7.9e-57 224.6 215 60.0
MSTRG.16973 Avicennia marina HOM05D005878 ORTHO05D007433 3.9e-56 222.2 178 64.6
TWI15G0528 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 3.9e-56 222.2 228 56.6
Actinidia01520 Actinidia chinensis HOM05D005878 ORTHO05D007433 5.1e-56 221.9 165 69.7
ATR1136G020 Amborella trichopoda HOM05D005878 ORTHO05D007433 5.1e-56 221.9 224 54.5
Aa31sc25G160 Aethionema arabicum HOM05D005878 ORTHO05D007433 1.9e-55 219.9 135 82.2
DCAR_006594 Daucus carota HOM05D005878 ORTHO05D007433 1.9e-55 219.9 238 56.3
PSO384G4469 Papaver somniferum HOM05D005878 ORTHO05D007433 1.9e-55 219.9 215 59.5
AUR62032609 Chenopodium quinoa HOM05D005878 ORTHO05D007433 3.3e-55 219.2 149 76.5
Rhsim10G0180100 Rhododendron simsii HOM05D005878 ORTHO05D007433 4.3e-55 218.8 172 72.1
GSVIVG01036595001 Vitis vinifera HOM05D005878 ORTHO05D007433 4.3e-55 218.8 207 60.4
EL10Ac2g02748 Beta vulgaris HOM05D005878 ORTHO05D007433 7.4e-55 218.0 159 71.7
BcaC03g13176 Brassica carinata HOM05D005878 ORTHO05D007433 1.3e-54 217.2 104 100.0
Lsat_1_v5_gn_9_74980 Lactuca sativa HOM05D005878 ORTHO05D007433 1.3e-54 217.2 184 66.8
Oeu006783.1 Olea europaea HOM05D005878 ORTHO05D007433 1.6e-54 216.9 219 57.1
Sc14g0005230 Simmondsia chinensis HOM05D005878 ORTHO05D007433 4.1e-53 212.2 182 64.8
unitig_22.g5332 Utricularia gibba HOM05D005878 ORTHO05D007433 5.8e-52 208.4 233 55.4
HanXRQChr11g0341301 Helianthus annuus HOM05D005878 ORTHO05D007433 1.0e-51 207.6 166 70.5
vmacro20585 Vaccinium macrocarpon HOM05D005878 ORTHO05D007433 3.8e-51 205.7 245 54.7
Zm00001eb182020 Zea mays HOM05D005878 ORTHO05D007433 3.8e-51 205.7 228 52.2
HPP92_016121 Vanilla planifolia HOM05D005878 ORTHO05D007433 5.0e-51 205.3 229 52.4
CDE08G0208 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 1.1e-50 204.1 227 53.7
A03p56860 Brassica napus HOM05D005878 ORTHO05D007433 1.9e-50 203.4 133 83.5
CDE02G0435 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 7.2e-50 201.4 204 56.4
Os02g0556800 Oryza sativa ssp. japonica HOM05D005878 ORTHO05D007433 1.3e-48 197.2 171 62.0
FAN03G0529 Fragaria x ananassa HOM05D005878 ORTHO05D007433 1.8e-48 196.8 230 54.8
AUR62001069 Chenopodium quinoa HOM05D005878 ORTHO05D007433 4.3e-47 192.2 130 76.2
AagrBONN_evm.TU.Sc2ySwM_117.450 Anthoceros agrestis HOM05D005878 ORTHO05D007433 1.4e-45 187.2 181 57.5
Hma1.2p1_0233F.1_g098360 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 1.8e-45 186.8 127 72.4
TPR.G1450 Trifolium pratense HOM05D005878 ORTHO05D007433 3.1e-45 186.0 138 73.2
Cpa.g.sc188.4 Carica papaya HOM05D005878 ORTHO05D007433 4.5e-44 182.2 117 78.6
SEGI_13955 Sequoiadendron giganteum HOM05D005878 ORTHO05D007433 5.9e-44 181.8 189 51.9
AagrBONN_evm.TU.Sc2ySwM_117.1283 Anthoceros agrestis HOM05D005878 ORTHO05D007433 7.7e-44 181.4 179 58.1
SGA_v2.0_scaffold430G51553 Striga asiatica HOM05D005878 ORTHO05D007433 7.7e-44 181.4 155 63.9
Mapoly0116s0014 Marchantia polymorpha HOM05D005878 ORTHO05D007433 2.2e-43 179.9 232 50.0
Atru.chr12.1246 Acer truncatum HOM05D005878 ORTHO05D007433 5.0e-43 178.7 172 62.2
Lj9A656G41 Lonicera japonica HOM05D005878 ORTHO05D007433 1.9e-42 176.8 162 62.3
Pp3c8_5370 Physcomitrium patens HOM05D005878 ORTHO05D007433 1.0e-40 171.0 181 52.5
SMO143G0125 Selaginella moellendorffii HOM05D005878 ORTHO05D007433 1.5e-39 167.2 181 53.0
Psat5g223120 Pisum sativum HOM05D005878 ORTHO05D007433 2.5e-39 166.4 208 51.0
Pp3c3_32790 Physcomitrium patens HOM05D005878 ORTHO05D007433 1.3e-38 164.1 237 44.3
Hma1.2p1_0233F.1_g098370 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 3.1e-37 159.5 110 72.7
Eucgr.L03611 Eucalyptus grandis HOM05D005878 ORTHO05D007433 5.3e-29 132.1 110 62.7
AUR62031722 Chenopodium quinoa HOM05D005878 ORTHO05D007433 1.6e-25 120.6 163 47.2
TAR628G0990 Trochodendron aralioides HOM05D005878 ORTHO05D007433 4.7e-25 119.0 161 47.8
C07p55210 Brassica napus HOM05D005878 ORTHO05D033170 8.0e-25 118.2 120 65.8
Atru.chr2.3038 Acer truncatum HOM05D005878 ORTHO05D007433 2.7e-20 103.2 99 60.6
CBR_g50344 Chara braunii HOM05D005878 ORTHO05D007433 3.6e-17 92.8 199 39.2
Atru.chr7.1915 Acer truncatum HOM05D005878 ORTHO05D007433 1.5e-15 87.4 105 50.5
Atru.chr3.2623 Acer truncatum HOM05D005878 ORTHO05D007433 2.6e-15 86.7 83 60.2
BolC7t45992H Brassica oleracea HOM05D005878 ORTHO05D033170 1.6e-12 77.4 59 88.1
Potri.001G032200 Populus trichocarpa HOM05D005878 ORTHO05D007433 3.8e-11 72.8 229 32.8
PGSC0003DMG400040390 Solanum tuberosum HOM05D005878 ORTHO05D007433 2.0e-07 60.5 72 51.4


User provided reference genes

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