Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 4.8e-82 307.8 154 100.0
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 1.9e-54 216.1 134 82.8
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 1.9e-54 216.1 134 82.8
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 5.6e-54 214.5 134 82.1
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 1.6e-53 213.0 134 81.3
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 4.7e-53 211.5 134 79.9
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 4.7e-53 211.5 134 80.6
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 3.1e-52 208.8 134 79.1
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 2.0e-51 206.1 136 77.9
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 8.3e-50 200.7 136 73.5
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 1.1e-49 200.3 136 73.5
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 1.4e-49 199.9 136 73.5
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.4e-49 199.9 136 74.3
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 2.4e-49 199.1 136 73.5
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 7.0e-49 197.6 136 72.1
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.2e-48 196.8 136 74.3
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 3.5e-48 195.3 149 67.1
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 1.0e-47 193.7 149 68.5
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 2.3e-47 192.6 136 69.9
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 3.0e-47 192.2 149 67.8
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 6.6e-47 191.0 134 72.4
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.1e-46 190.3 149 67.8
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 1.5e-46 189.9 149 65.8
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 1.5e-46 189.9 149 65.8
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 2.5e-46 189.1 149 66.4
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 3.3e-46 188.7 124 75.0
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 5.6e-46 188.0 149 66.4
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 5.6e-46 188.0 149 65.8
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 5.6e-46 188.0 136 68.4
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 7.3e-46 187.6 136 66.2
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 9.5e-46 187.2 135 68.1
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 1.6e-45 186.4 133 69.2
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 1.6e-45 186.4 134 68.7
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 2.1e-45 186.0 136 70.6
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 2.1e-45 186.0 137 70.1
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 2.1e-45 186.0 137 69.3
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 2.8e-45 185.7 137 67.2
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 2.8e-45 185.7 137 69.3
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 2.8e-45 185.7 140 68.6
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 2.8e-45 185.7 135 68.1
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 3.6e-45 185.3 139 69.1
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 3.6e-45 185.3 137 69.3
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 4.7e-45 184.9 137 67.9
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 4.7e-45 184.9 135 69.6
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 4.7e-45 184.9 138 68.1
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 6.2e-45 184.5 139 66.9
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 6.2e-45 184.5 136 66.2
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 8.1e-45 184.1 137 67.2
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 1.1e-44 183.7 136 66.9
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.1e-44 183.7 135 67.4
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 1.1e-44 183.7 136 67.6
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 1.4e-44 183.3 137 66.4
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 1.4e-44 183.3 137 67.9
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 1.8e-44 183.0 136 67.6
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.8e-44 183.0 135 67.4
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 1.8e-44 183.0 135 67.4
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 1.8e-44 183.0 137 66.4
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.8e-44 183.0 136 68.4
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 1.8e-44 183.0 136 68.4
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 2.3e-44 182.6 139 66.9
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 2.3e-44 182.6 136 66.9
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 2.3e-44 182.6 136 66.9
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 3.1e-44 182.2 137 65.7
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 3.1e-44 182.2 135 65.9
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 4.0e-44 181.8 139 67.6
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 5.2e-44 181.4 139 66.9
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 5.2e-44 181.4 137 67.9
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 5.2e-44 181.4 136 67.6
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 6.8e-44 181.0 135 66.7
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 8.9e-44 180.6 149 62.4
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 1.2e-43 180.3 139 66.2
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 1.2e-43 180.3 137 67.2
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 1.5e-43 179.9 136 66.9
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.5e-43 179.9 137 66.4
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.0e-43 179.5 143 63.6
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.0e-43 179.5 136 65.4
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.0e-43 179.5 136 65.4
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 2.0e-43 179.5 137 65.0
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 2.6e-43 179.1 137 65.0
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 2.6e-43 179.1 143 63.6
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.6e-43 179.1 143 63.6
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.6e-43 179.1 143 63.6
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.6e-43 179.1 143 63.6
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 3.4e-43 178.7 137 65.0
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 3.4e-43 178.7 136 64.7
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 3.4e-43 178.7 137 66.4
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 4.4e-43 178.3 137 66.4
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 4.4e-43 178.3 135 65.2
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 4.4e-43 178.3 137 65.0
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 4.4e-43 178.3 137 65.0
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 5.8e-43 177.9 137 66.4
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 7.5e-43 177.6 134 66.4
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 9.8e-43 177.2 134 66.4
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 9.8e-43 177.2 137 65.0
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 9.8e-43 177.2 143 62.2
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 9.8e-43 177.2 143 62.9
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 9.8e-43 177.2 138 65.9
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 1.3e-42 176.8 136 64.7
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 1.3e-42 176.8 137 62.8
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 1.3e-42 176.8 137 64.2
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 1.3e-42 176.8 137 65.7
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 1.3e-42 176.8 137 65.7
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.7e-42 176.4 137 65.0
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 1.7e-42 176.4 136 64.0
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.7e-42 176.4 137 66.4
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 1.7e-42 176.4 137 65.0
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 2.2e-42 176.0 139 62.6
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 2.9e-42 175.6 137 65.0
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 2.9e-42 175.6 139 63.3
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 2.9e-42 175.6 135 65.2
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 3.7e-42 175.3 136 63.2
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 3.7e-42 175.3 136 61.0
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 3.7e-42 175.3 137 66.4
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 4.9e-42 174.9 137 63.5
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 6.4e-42 174.5 137 65.0
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 8.3e-42 174.1 137 64.2
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 8.3e-42 174.1 145 62.1
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 1.1e-41 173.7 139 63.3
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 2.4e-41 172.6 136 66.2
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 3.2e-41 172.2 137 64.2
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 2.1e-40 169.5 136 63.2
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 3.5e-40 168.7 136 64.0
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 3.9e-39 165.2 139 59.7
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 5.1e-39 164.9 134 61.2
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 6.6e-39 164.5 137 62.8
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 2.5e-38 162.5 132 60.6
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.8e-37 159.1 161 55.3
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 6.2e-37 157.9 135 57.8
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 8.1e-37 157.5 121 66.1
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 2.0e-35 152.9 136 57.4
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 9.9e-35 150.6 149 54.4
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 1.7e-34 149.8 127 59.8
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 1.0e-31 140.6 116 61.2
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 8.6e-31 137.5 116 57.8
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 7.3e-30 134.4 130 53.1
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 5.2e-28 128.3 113 57.5
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 5.2e-28 128.3 113 57.5
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 5.2e-28 128.3 113 57.5
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 8.9e-28 127.5 129 55.0
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 3.2e-25 119.0 101 66.3
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 1.3e-21 107.1 57 86.0
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 2.8e-21 105.9 59 81.4
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 2.8e-21 105.9 75 74.7
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 5.3e-20 101.7 56 82.1
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 9.9e-19 97.4 63 73.0
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.3e-18 97.1 89 53.9
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 2.2e-18 96.3 53 86.8
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 2.9e-18 95.9 57 84.2
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 2.9e-18 95.9 57 84.2
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 4.6e-16 88.6 129 42.6
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 5.1e-15 85.1 59 59.3
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 2.4e-12 76.3 43 79.1
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 6.9e-12 74.7 59 57.6
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 1.5e-11 73.6 134 35.1
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 1.5e-11 73.6 121 38.0
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 2.6e-11 72.8 46 65.2
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 5.8e-11 71.6 49 65.3
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 3.8e-10 68.9 54 61.1
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 3.2e-09 65.9 61 54.1
BcaC02g10492 Brassica carinata HOM05D036142 ORTHO05D023770 7.1e-09 64.7 33 93.9
C04p28240 Brassica napus HOM05D036142 ORTHO05D023770 7.1e-09 64.7 33 93.9
BolC4t24369H Brassica oleracea HOM05D036142 ORTHO05D023770 7.1e-09 64.7 33 93.9
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 9.3e-09 64.3 61 55.7
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.2e-08 63.9 60 56.7
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 7.9e-08 61.2 110 31.8
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 1.3e-07 60.5 51 58.8
Zm00001eb395010 Zea mays HOM05D034860 ORTHO05D442630 1.8e-07 60.1 37 64.9
Zm00001eb363380 Zea mays HOM05D003935 ORTHO05D445556 1.5e-06 57.0 37 62.2
BcaC04g21123 Brassica carinata HOM05D003935 ORTHO05D095343 9.6e-06 54.3 34 79.4


User provided reference genes

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