Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 1.1e-178 629.8 312 100.0
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 6.8e-168 594.0 313 95.2
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.9e-165 585.9 316 92.7
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 4.1e-165 584.7 316 91.5
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 2.1e-164 582.4 313 94.2
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 1.5e-162 576.2 312 93.3
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 9.6e-162 573.5 309 93.5
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 3.6e-161 571.6 316 88.9
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 8.1e-161 570.5 316 89.2
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.2e-159 566.6 316 88.6
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 3.4e-159 565.1 316 88.0
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 9.9e-159 563.5 316 87.7
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 1.3e-158 563.1 316 87.7
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 4.2e-157 558.1 315 87.6
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 9.3e-157 557.0 315 86.7
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 6.6e-155 550.8 316 86.4
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.1e-152 543.5 312 85.3
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 5.3e-152 541.2 315 84.8
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 3.4e-151 538.5 315 84.4
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 4.9e-150 534.6 317 83.3
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 8.4e-150 533.9 315 83.5
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 1.4e-149 533.1 320 84.7
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 1.9e-149 532.7 317 83.6
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 3.2e-149 531.9 317 83.3
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 3.2e-149 531.9 319 84.6
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 4.2e-149 531.6 316 82.9
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 9.3e-149 530.4 316 82.6
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 1.6e-148 529.6 316 83.2
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 2.1e-148 529.3 317 82.0
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 2.7e-148 528.9 313 83.1
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 3.5e-148 528.5 317 83.3
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 3.5e-148 528.5 316 82.3
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 3.5e-148 528.5 317 82.6
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 4.6e-148 528.1 317 82.6
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 6.0e-148 527.7 314 82.5
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.0e-147 526.9 317 83.0
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 1.0e-147 526.9 317 83.0
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 1.3e-147 526.6 315 82.5
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 1.3e-147 526.6 318 83.0
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 1.7e-147 526.2 313 82.7
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 3.0e-147 525.4 318 82.1
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 3.0e-147 525.4 317 82.6
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 3.9e-147 525.0 316 82.9
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 5.1e-147 524.6 315 81.9
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 8.7e-147 523.9 315 82.9
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 1.5e-146 523.1 316 82.3
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 1.5e-146 523.1 313 82.1
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.9e-146 522.7 314 81.2
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 2.5e-146 522.3 317 82.3
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 2.5e-146 522.3 317 81.4
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 3.3e-146 521.9 317 82.0
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 4.3e-146 521.5 313 82.1
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 4.3e-146 521.5 317 82.3
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 5.6e-146 521.2 317 81.7
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 5.6e-146 521.2 317 82.0
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 1.3e-145 520.0 317 81.7
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.6e-145 519.6 311 84.9
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 2.1e-145 519.2 317 82.0
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 2.8e-145 518.8 315 81.9
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 3.6e-145 518.5 315 81.3
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 3.6e-145 518.5 317 82.0
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 4.8e-145 518.1 317 81.1
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 4.8e-145 518.1 317 82.0
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 4.8e-145 518.1 317 82.0
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 6.2e-145 517.7 317 81.7
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 6.2e-145 517.7 316 82.0
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 6.2e-145 517.7 316 82.0
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 8.1e-145 517.3 317 81.1
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.1e-144 516.9 317 82.0
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 1.4e-144 516.5 316 80.1
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 1.4e-144 516.5 314 81.8
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 2.4e-144 515.8 315 81.9
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 2.4e-144 515.8 315 80.6
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 3.1e-144 515.4 317 81.4
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 4.0e-144 515.0 316 81.3
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 5.3e-144 514.6 315 81.3
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 1.5e-143 513.1 317 79.8
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.0e-143 512.7 318 80.2
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.0e-143 512.7 318 80.2
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 3.4e-143 511.9 318 80.2
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 3.4e-143 511.9 318 80.2
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 3.4e-143 511.9 332 78.6
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 4.5e-143 511.5 318 80.2
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 4.5e-143 511.5 315 81.0
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.8e-143 511.1 318 79.9
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.8e-143 511.1 318 80.2
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 9.9e-143 510.4 314 80.9
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 9.9e-143 510.4 315 79.4
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 1.7e-142 509.6 317 78.2
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 2.2e-142 509.2 340 76.2
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 1.4e-141 506.5 317 79.2
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 1.9e-141 506.1 317 79.2
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 1.9e-141 506.1 316 78.8
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 2.4e-141 505.8 316 79.1
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 2.4e-141 505.8 317 77.9
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 3.2e-141 505.4 316 78.8
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 1.6e-140 503.1 316 79.1
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 2.1e-140 502.7 323 78.9
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 3.5e-140 501.9 311 80.4
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 4.6e-140 501.5 316 78.8
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 4.6e-140 501.5 317 79.2
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 6.0e-140 501.1 315 79.7
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 1.0e-139 500.4 311 80.1
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 3.0e-139 498.8 310 80.0
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 3.9e-139 498.4 317 77.0
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 6.7e-139 497.7 317 77.6
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 6.7e-139 497.7 385 69.4
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 2.5e-138 495.7 312 79.2
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 4.3e-138 495.0 321 75.4
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 5.6e-138 494.6 315 78.4
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 2.1e-137 492.7 311 80.1
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 4.8e-137 491.5 337 75.1
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 5.3e-136 488.0 321 76.9
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 1.2e-135 486.9 308 79.9
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 2.2e-134 482.6 307 78.2
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 3.5e-132 475.3 316 73.1
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 5.1e-131 471.5 312 76.6
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 1.9e-130 469.5 313 76.0
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 9.6e-130 467.2 308 74.0
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 3.1e-128 462.2 287 79.8
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 4.1e-128 461.8 296 76.0
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 7.2e-125 451.1 290 77.6
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 6.1e-124 448.0 463 54.4
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 5.1e-123 444.9 327 70.6
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 5.1e-123 444.9 314 72.9
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 8.7e-123 444.1 285 77.9
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 1.1e-122 443.7 315 72.1
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 1.6e-121 439.9 262 85.1
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.6e-121 439.9 284 77.8
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 1.4e-117 426.8 314 67.2
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 1.0e-115 420.6 312 69.2
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 2.8e-113 412.5 284 72.2
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 9.7e-106 387.5 242 80.2
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 2.9e-86 322.8 215 75.3
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 1.0e-78 297.7 252 62.3
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 1.3e-73 280.8 192 72.9
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 1.4e-72 277.3 312 49.7
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 1.8e-72 276.9 310 48.1
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 8.0e-68 261.5 163 79.1
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 7.5e-66 255.0 274 52.9
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.3e-65 254.2 179 71.5
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 7.0e-64 248.4 168 73.2
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 1.2e-60 237.7 297 45.8
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 5.8e-58 228.8 190 61.1
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 4.9e-57 225.7 153 73.2
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 4.9e-57 225.7 153 73.2
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 4.9e-57 225.7 112 94.6
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 2.1e-55 220.3 305 40.7
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 1.0e-54 218.0 185 64.9
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 2.3e-54 216.9 274 47.4
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 5.6e-53 212.2 134 79.9
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 4.7e-52 209.1 181 61.3
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 7.3e-45 185.3 113 76.1
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 7.3e-45 185.3 113 76.1
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 4.7e-44 182.6 128 69.5
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 6.2e-44 182.2 103 82.5
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 6.2e-44 182.2 113 75.2
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 8.1e-44 181.8 298 41.9
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 3.8e-41 172.9 170 59.4
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 2.5e-37 160.2 108 75.0
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 8.1e-36 155.2 274 34.7
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 5.8e-34 149.1 151 58.9
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.4e-32 143.7 144 57.6
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 3.9e-30 136.3 80 86.2
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 3.9e-30 136.3 80 86.2
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 5.6e-29 132.5 181 48.1
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.1e-24 118.2 68 79.4
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.6e-23 114.4 118 58.5
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 3.5e-23 113.2 114 58.8
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 3.9e-22 109.8 60 80.0
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 2.5e-21 107.1 72 66.7
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 6.2e-20 102.4 53 90.6
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 5.3e-19 99.4 138 39.9
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 1.3e-17 94.7 53 83.0
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 5.5e-16 89.4 47 85.1
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 2.1e-15 87.4 52 80.8
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 4.3e-13 79.7 43 83.7
BcaC02g10492 Brassica carinata HOM05D036142 ORTHO05D023770 1.4e-08 64.7 33 93.9
C04p28240 Brassica napus HOM05D036142 ORTHO05D023770 1.4e-08 64.7 33 93.9
BolC4t24369H Brassica oleracea HOM05D036142 ORTHO05D023770 1.4e-08 64.7 33 93.9
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 7.2e-08 62.4 85 51.8
Zm00001eb395010 Zea mays HOM05D034860 ORTHO05D442630 2.1e-07 60.8 37 67.6
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 7.9e-07 58.9 97 44.3
Zm00001eb363380 Zea mays HOM05D003935 ORTHO05D445556 1.8e-06 57.8 37 64.9
BcaC09g49081 Brassica carinata HOM05D003935 ORTHO05D091498 2.3e-06 57.4 54 61.1
Atru.chr2.3021 Acer truncatum HOM05D003935 ORTHO05D052568 8.7e-06 55.5 80 45.0


User provided reference genes

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