Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 3.7e-299 1030.8 525 100.0
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 1.8e-293 1011.9 525 97.9
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 6.7e-285 983.4 525 95.4
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 1.9e-279 965.3 521 93.7
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 7.2e-279 963.4 640 80.3
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 9.4e-279 963.0 629 81.6
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 2.6e-276 954.9 522 92.7
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 3.4e-276 954.5 522 92.7
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 1.7e-272 942.2 525 91.6
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 4.4e-268 927.5 526 90.5
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 2.6e-252 875.2 525 84.0
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 2.0e-249 865.5 526 84.6
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 6.6e-248 860.5 520 83.3
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 5.4e-242 840.9 526 81.7
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 1.5e-239 832.8 523 81.6
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 2.0e-228 795.8 518 80.3
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 1.1e-223 780.0 514 75.3
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 1.4e-221 773.1 520 73.8
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 3.2e-218 761.9 512 73.8
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 4.6e-217 758.1 515 74.8
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 1.0e-216 756.9 518 74.9
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 1.3e-216 756.5 520 73.8
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 5.1e-216 754.6 495 80.6
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 1.9e-215 752.7 515 73.6
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 2.5e-215 752.3 512 73.8
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 3.3e-215 751.9 517 72.1
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 7.3e-215 750.7 520 71.2
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 1.6e-214 749.6 520 72.1
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 8.1e-214 747.3 520 71.9
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 2.4e-213 745.7 520 70.6
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 3.1e-213 745.3 520 72.5
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 5.3e-213 744.6 517 71.4
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 1.2e-212 743.4 516 71.7
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 2.0e-212 742.7 517 70.8
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 4.5e-212 741.5 520 71.3
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 5.8e-212 741.1 520 71.0
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 9.9e-212 740.3 529 70.3
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 8.4e-211 737.3 520 70.0
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 4.6e-209 731.5 520 71.0
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 1.3e-208 729.9 520 70.4
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 8.7e-208 727.2 521 70.8
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 2.5e-207 725.7 520 69.8
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 5.6e-207 724.5 512 70.9
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 6.2e-206 721.1 586 63.8
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 1.4e-205 719.9 512 72.5
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 2.4e-205 719.2 515 69.5
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 4.0e-205 718.4 515 69.5
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 5.3e-205 718.0 513 70.6
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 9.0e-205 717.2 515 68.7
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 2.0e-204 716.1 512 71.9
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 1.0e-203 713.8 498 70.7
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 1.7e-203 713.0 514 69.5
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 2.2e-203 712.6 512 69.9
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 4.2e-202 708.4 515 69.5
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 6.0e-201 704.5 538 66.5
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 1.3e-200 703.4 491 71.1
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 1.5e-199 699.9 489 74.4
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 1.5e-196 689.9 472 77.5
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 1.3e-195 686.8 481 72.3
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 3.8e-195 685.3 496 70.4
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 7.2e-194 681.0 512 67.6
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 1.3e-192 676.8 472 75.8
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 1.3e-190 670.2 512 67.2
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 9.0e-189 664.1 472 70.8
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 1.1e-186 657.1 520 66.2
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 7.2e-186 654.4 512 66.4
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 2.7e-185 652.5 521 66.2
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 1.5e-180 636.7 533 64.2
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 1.4e-178 630.2 532 63.5
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 3.2e-178 629.0 522 60.3
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 9.4e-178 627.5 497 66.6
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 2.3e-176 622.9 553 58.8
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.3e-176 622.9 548 61.9
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 5.1e-176 621.7 444 69.8
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 1.7e-174 616.7 420 75.0
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.6e-172 610.1 427 71.9
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 3.8e-171 605.5 514 61.5
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 8.5e-171 604.4 460 67.6
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 1.5e-170 603.6 410 74.4
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 3.3e-167 592.4 454 66.1
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 5.7e-167 591.7 533 61.0
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 7.5e-167 591.3 510 61.0
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 8.2e-166 587.8 421 71.0
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 5.3e-165 585.1 421 70.5
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 2.2e-163 579.7 426 70.4
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 2.5e-162 576.2 499 61.7
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 8.8e-160 567.8 571 56.0
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 8.3e-158 561.2 526 57.6
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 2.0e-156 556.6 449 64.1
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 2.0e-156 556.6 501 59.1
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 2.2e-155 553.1 517 54.5
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.2e-151 540.8 387 71.8
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 5.7e-151 538.5 584 52.7
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 1.1e-149 534.3 555 53.5
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 2.4e-149 533.1 503 56.1
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 7.7e-148 528.1 427 64.4
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 8.0e-145 518.1 448 58.7
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 9.2e-141 504.6 459 59.3
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 2.3e-139 500.0 467 56.3
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 1.4e-136 490.7 390 66.2
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 8.6e-131 471.5 424 60.4
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 1.6e-129 467.2 379 63.9
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 1.5e-122 444.1 252 89.7
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 3.8e-118 429.5 397 58.7
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 2.7e-116 423.3 292 71.6
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 3.0e-115 419.9 508 46.5
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 5.1e-115 419.1 300 70.0
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 1.1e-112 411.4 480 46.9
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 4.8e-105 386.0 341 61.0
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 2.0e-103 380.6 515 42.7
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 1.2e-100 371.3 432 52.1
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.5e-95 354.4 291 64.3
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 1.2e-92 344.7 442 43.7
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 8.1e-89 332.0 167 100.0
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 5.8e-87 325.9 267 64.4
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 3.4e-79 300.1 373 48.0
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 1.2e-76 291.6 217 64.5
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.5e-74 284.6 469 39.9
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.7e-68 263.8 190 67.4
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 1.0e-67 261.9 433 37.6
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 2.8e-65 253.8 187 67.9
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 1.2e-63 248.4 218 60.6
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 9.4e-53 212.2 674 27.4
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 9.4e-53 212.2 199 56.3
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 4.0e-51 206.8 189 58.7
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 3.1e-40 170.6 436 31.9
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 7.0e-40 169.5 162 57.4
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 2.3e-38 164.5 177 51.4
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 2.1e-36 157.9 148 52.7
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 1.8e-35 154.8 97 79.4
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.6e-34 151.0 122 58.2
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 9.5e-29 132.5 95 74.7
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 8.0e-28 129.4 151 45.0
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 8.0e-28 129.4 151 45.0
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 2.0e-26 124.8 506 27.9
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 3.4e-26 124.0 96 58.3
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 5.7e-26 123.2 86 68.6
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 9.8e-26 122.5 95 67.4
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 2.4e-24 117.9 96 59.4
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 4.6e-23 113.6 71 80.3
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 6.6e-22 109.8 80 58.8
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 8.0e-20 102.8 89 62.9
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.0e-18 98.2 62 80.6
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.0e-18 98.2 62 80.6
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 3.4e-18 97.4 67 71.6
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 5.4e-16 90.1 102 45.1
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 7.0e-16 89.7 56 78.6
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 7.3e-13 79.7 62 64.5
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 2.8e-12 77.8 50 78.0
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 8.1e-12 76.3 73 56.2
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 5.2e-11 73.6 54 61.1
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.5e-10 72.0 37 91.9
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 4.9e-09 67.0 181 30.9


User provided reference genes

Program Settings