Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 4.4e-164 581.3 299 100.0
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 1.1e-138 496.9 310 84.8
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 1.7e-136 489.6 299 86.6
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 4.4e-132 474.9 270 90.0
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 5.1e-128 461.5 304 79.9
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 4.7e-126 454.9 316 77.8
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 6.2e-126 454.5 304 78.0
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 1.2e-124 450.3 307 77.9
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.9e-122 443.0 299 76.9
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 2.4e-122 442.6 304 77.6
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 3.9e-120 435.3 298 76.8
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 6.4e-115 417.9 304 71.4
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 2.1e-113 412.9 281 77.2
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 3.7e-110 402.1 312 69.6
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 2.4e-109 399.4 282 75.9
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 7.1e-98 361.3 281 69.8
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 7.4e-95 351.3 289 63.0
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 7.4e-87 324.7 292 56.8
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 3.7e-86 322.4 283 60.1
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 1.3e-83 313.9 294 55.1
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 2.9e-83 312.8 290 54.8
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 3.8e-83 312.4 290 54.8
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 8.5e-83 311.2 290 54.5
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 9.4e-82 307.8 304 52.6
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 2.1e-81 306.6 297 54.9
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 2.1e-81 306.6 268 57.5
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 2.1e-81 306.6 303 52.8
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 3.9e-80 302.4 290 55.2
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 6.7e-80 301.6 273 54.9
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 4.4e-79 298.9 296 53.4
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 1.3e-78 297.4 283 54.4
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 2.8e-78 296.2 288 52.4
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 1.8e-77 293.5 280 56.8
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.8e-77 293.5 291 56.0
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 3.1e-77 292.7 295 54.9
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 1.2e-76 290.8 294 54.8
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 1.5e-76 290.4 308 51.3
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 1.5e-76 290.4 273 54.2
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 3.5e-76 289.3 283 53.4
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 3.5e-76 289.3 291 55.3
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 1.7e-75 287.0 302 50.7
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 3.8e-75 285.8 304 53.6
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 6.5e-75 285.0 292 52.4
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 2.5e-74 283.1 304 53.3
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 1.6e-73 280.4 296 52.7
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 8.0e-73 278.1 276 52.5
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 2.3e-72 276.6 297 52.2
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 6.7e-72 275.0 293 49.8
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 8.8e-72 274.6 282 54.6
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.1e-71 274.2 294 53.1
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 2.0e-71 273.5 292 50.3
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 2.6e-71 273.1 268 53.0
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 2.6e-71 273.1 294 51.0
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 4.4e-71 272.3 292 52.1
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 7.4e-71 271.6 295 49.8
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 3.7e-70 269.2 293 51.5
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 1.1e-69 267.7 274 55.1
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 5.3e-69 265.4 291 47.4
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 5.3e-69 265.4 268 48.9
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 1.2e-68 264.2 294 48.0
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.6e-68 263.8 296 51.0
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 2.6e-68 263.1 299 50.2
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 5.9e-68 261.9 295 51.5
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 1.0e-67 261.2 286 50.7
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 1.7e-67 260.4 296 49.0
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 6.5e-67 258.5 293 48.8
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 1.9e-66 256.9 291 48.8
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 1.9e-66 256.9 282 51.4
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.9e-66 256.9 294 49.7
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 3.2e-66 256.1 282 51.4
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 3.2e-66 256.1 295 50.2
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 5.5e-66 255.4 274 51.5
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 5.5e-66 255.4 294 46.6
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 1.2e-65 254.2 298 49.3
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 3.6e-65 252.7 263 52.9
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 4.7e-65 252.3 267 50.2
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 4.4e-63 245.7 282 49.6
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 1.4e-61 240.7 280 50.0
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 1.6e-60 237.3 301 48.5
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 2.0e-60 236.9 307 44.3
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 3.5e-60 236.1 300 45.7
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 1.3e-59 234.2 291 46.7
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 1.3e-59 234.2 277 49.5
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.9e-59 233.0 262 51.1
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 3.8e-59 232.6 299 44.8
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 6.5e-59 231.9 248 51.2
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 3.2e-58 229.6 300 44.7
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 3.2e-58 229.6 217 53.9
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 3.6e-57 226.1 272 50.7
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 6.1e-57 225.3 363 41.0
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 1.2e-55 221.1 299 42.1
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 3.4e-55 219.5 268 45.5
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 3.4e-55 219.5 299 42.8
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 2.2e-54 216.9 279 45.9
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 4.5e-52 209.1 313 43.1
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 5.9e-52 208.8 192 67.7
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 5.9e-52 208.8 289 45.0
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 1.7e-51 207.2 294 44.6
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 4.2e-50 202.6 299 41.1
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 7.2e-50 201.8 215 49.3
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 1.2e-49 201.1 282 43.6
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 5.2e-48 195.7 192 64.6
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 1.5e-47 194.1 302 40.1
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 9.8e-47 191.4 192 56.2
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 3.1e-45 186.4 192 63.0
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 6.6e-43 178.7 194 48.5
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 3.3e-42 176.4 248 42.7
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.2e-41 174.5 178 56.2
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.2e-41 174.5 178 56.2
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 1.3e-38 164.5 190 50.5
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.7e-38 164.1 118 72.9
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.4e-37 160.2 130 68.5
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 5.4e-37 159.1 273 38.8
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 7.0e-37 158.7 173 48.6
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 8.6e-35 151.8 200 49.0
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 3.3e-34 149.8 178 46.6
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 3.6e-33 146.4 220 40.9
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.7e-28 130.2 192 43.8
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.5e-28 129.8 192 43.2
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 1.3e-27 127.9 258 33.3
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 1.8e-24 117.5 135 45.9
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.0e-24 116.3 148 49.3
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 4.4e-23 112.8 154 40.9
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 2.9e-22 110.2 67 86.6
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 2.9e-22 110.2 67 86.6
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 1.3e-19 101.3 65 73.8
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 1.3e-19 101.3 206 34.5
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 1.7e-19 100.9 221 34.8
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 2.3e-19 100.5 170 37.6
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 8.6e-19 98.6 114 48.2
AL5G40680 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.3e-18 96.7 135 47.4
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 1.2e-15 88.2 102 43.1
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 8.4e-14 82.0 123 41.5
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 5.1e-11 72.8 65 56.9
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 1.1e-10 71.6 177 29.4
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 7.3e-10 68.9 84 42.9
VMungo1127G0437 Vigna mungo HOM05D005448 ORTHO05D006405 1.4e-08 64.7 147 28.6
GSVIVG01007748001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.8e-08 64.3 62 56.5
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 9.0e-08 62.0 173 28.9
BolC2t09494H Brassica oleracea HOM05D005448 ORTHO05D006405 3.4e-07 60.1 63 63.5
Actinidia19002 Actinidia chinensis HOM05D005448 ORTHO05D006405 3.8e-06 56.6 67 46.3


User provided reference genes

Program Settings