Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21590 Brassica carinata HOM05D001894 ORTHO05D001752 0.0e+00 1240.3 631 100.0
BcaB01g05684 Brassica carinata HOM05D001894 ORTHO05D001752 7.8e-179 631.3 742 53.8
Thhalv10012434m.g Eutrema salsugineum HOM05D001894 ORTHO05D001752 1.0e-178 630.9 777 53.4
BcaNung06142 Brassica carinata HOM05D001894 ORTHO05D001752 1.2e-171 607.4 748 53.7
AT5G07980 Arabidopsis thaliana HOM05D001894 ORTHO05D001752 1.3e-160 570.9 742 51.2
AT5G07940 Arabidopsis thaliana HOM05D001894 ORTHO05D001752 9.3e-156 554.7 755 50.3
AL6G18320 Arabidopsis lyrata HOM05D001894 ORTHO05D001752 2.5e-153 546.6 743 50.2
CARHR205210 Cardamine hirsuta HOM05D001894 ORTHO05D001752 7.4e-153 545.0 728 50.5
AL6G18280 Arabidopsis lyrata HOM05D001894 ORTHO05D001752 3.5e-147 526.2 780 48.1
CARHR205250 Cardamine hirsuta HOM05D001894 ORTHO05D001752 9.6e-145 518.1 749 48.6
Thhalv10012438m.g Eutrema salsugineum HOM05D001894 ORTHO05D001752 9.0e-143 511.5 788 46.2
Carub.0006s0683 Capsella rubella HOM05D001894 ORTHO05D001752 1.5e-142 510.8 767 46.8
BcaB01g05685 Brassica carinata HOM05D001894 ORTHO05D001752 6.9e-135 485.3 758 45.1
A04p25640 Brassica napus HOM05D001894 ORTHO05D001752 2.1e-115 420.6 717 44.8
BraA04t18068Z Brassica rapa HOM05D001894 ORTHO05D001752 1.0e-114 418.3 717 44.8
BcaC02g07837 Brassica carinata HOM05D001894 ORTHO05D001752 3.9e-114 416.4 728 44.8
C04p62790 Brassica napus HOM05D001894 ORTHO05D001752 2.0e-113 414.1 728 44.8
BraA02t04937Z Brassica rapa HOM05D001894 ORTHO05D001752 9.7e-113 411.8 727 44.0
BcaC03g13202 Brassica carinata HOM05D001894 ORTHO05D001752 2.4e-111 407.1 722 44.2
C02p03360 Brassica napus HOM05D001894 ORTHO05D001752 2.4e-111 407.1 723 44.3
BolC2t06298H Brassica oleracea HOM05D001894 ORTHO05D001752 2.4e-111 407.1 723 44.3
BcaB05g21594 Brassica carinata HOM05D001894 ORTHO05D001752 2.2e-109 400.6 728 42.2
BcaC03g15744 Brassica carinata HOM05D001894 ORTHO05D001752 3.4e-105 386.7 731 43.1
BolC2t09496H Brassica oleracea HOM05D001894 ORTHO05D001752 3.4e-105 386.7 731 43.1
C02p34760 Brassica napus HOM05D001894 ORTHO05D001752 4.4e-105 386.3 731 43.0
THA.LOC104818516 Tarenaya hassleriana HOM05D001894 ORTHO05D001752 4.4e-97 359.8 823 37.5
Aa31LG3G18540 Aethionema arabicum HOM05D001894 ORTHO05D001752 2.0e-78 297.7 665 39.2
Aa31LG3G18550 Aethionema arabicum HOM05D001894 ORTHO05D001752 3.9e-77 293.5 658 38.3
AT5G07970 Arabidopsis thaliana HOM05D001894 ORTHO05D001752 4.9e-56 223.4 210 62.4
SpUn0847_0010 Schrenkiella parvula HOM05D001894 ORTHO05D001752 1.4e-55 221.9 378 44.4
Sp6g35010 Schrenkiella parvula HOM05D001894 ORTHO05D001752 9.0e-50 202.6 200 61.0
A02p21390 Brassica napus HOM05D001894 ORTHO05D001752 2.0e-49 201.4 396 41.7
AL6G18310 Arabidopsis lyrata HOM05D001894 ORTHO05D001752 3.4e-49 200.7 222 56.8
CARHR205220 Cardamine hirsuta HOM05D001894 ORTHO05D001752 3.2e-47 194.1 219 55.3
Atru.chr9.413 Acer truncatum HOM05D001894 ORTHO05D001752 1.3e-16 92.4 328 29.9
COL.COLO4_37591 Corchorus olitorius HOM05D001894 ORTHO05D001752 1.4e-15 89.0 604 23.8
Oeu061151.1 Olea europaea HOM05D001894 ORTHO05D001752 1.6e-14 85.5 523 25.2
Dinv17398 Davidia involucrata HOM05D001894 ORTHO05D001752 6.1e-14 83.6 257 29.2
Atru.chr8.463 Acer truncatum HOM05D001894 ORTHO05D001752 7.9e-14 83.2 570 24.9
Ciclev10018461m.g Citrus clementina HOM05D001894 ORTHO05D001752 7.9e-14 83.2 724 22.9
GSVIVG01032923001 Vitis vinifera HOM05D001894 ORTHO05D001752 1.4e-13 82.4 518 25.1
HanXRQChr14g0432181 Helianthus annuus HOM05D001894 ORTHO05D001752 6.7e-13 80.1 708 24.6
RcHm_v2.0_Chr7g0182781 Rosa chinensis HOM05D001894 ORTHO05D001752 8.8e-13 79.7 199 33.7
Gohir.D03G096000 Gossypium hirsutum HOM05D001894 ORTHO05D001752 2.5e-12 78.2 192 31.2
FAN08G3261 Fragaria x ananassa HOM05D001894 ORTHO05D001752 1.3e-11 75.9 198 34.3
CAN.G479.18 Capsicum annuum HOM05D001894 ORTHO05D001752 1.7e-11 75.5 500 24.2
Gorai.003G100700 Gossypium raimondii HOM05D001894 ORTHO05D001752 1.7e-11 75.5 192 30.7
Lj5C104T5 Lonicera japonica HOM05D001894 ORTHO05D001752 1.7e-11 75.5 767 24.4
Nn4g23398 Nelumbo nucifera HOM05D001894 ORTHO05D001752 1.7e-11 75.5 298 26.2
FAN18G3960 Fragaria x ananassa HOM05D001894 ORTHO05D001752 2.2e-11 75.1 195 33.8
FvH4_5g14040 Fragaria vesca HOM05D001894 ORTHO05D001752 2.8e-11 74.7 195 33.8
Dinv10522 Davidia involucrata HOM05D001894 ORTHO05D001752 8.2e-11 73.2 405 27.2
FAN13G2812 Fragaria x ananassa HOM05D001894 ORTHO05D001752 8.2e-11 73.2 195 33.8
Psat5g201960 Pisum sativum HOM05D001894 ORTHO05D001752 8.2e-11 73.2 506 25.9
Gorai.006G268000 Gossypium raimondii HOM05D001894 ORTHO05D001752 1.1e-10 72.8 224 31.2
Glyma.05G022300 Glycine max HOM05D001894 ORTHO05D001752 1.8e-10 72.0 555 26.3
Oeu061152.1 Olea europaea HOM05D001894 ORTHO05D001752 1.8e-10 72.0 414 25.6
Thecc.03G099600 Theobroma cacao HOM05D001894 ORTHO05D001752 2.4e-10 71.6 275 26.5
Peaxi162Scf00702g00418 Petunia axillaris HOM05D001894 ORTHO05D001752 3.1e-10 71.2 434 27.4
Oeu001012.1 Olea europaea HOM05D001894 ORTHO05D001752 5.3e-10 70.5 498 23.9
Oeu008254.3 Olea europaea HOM05D001894 ORTHO05D001752 5.3e-10 70.5 504 24.2
Psat4g047960 Pisum sativum HOM05D001894 ORTHO05D001752 5.3e-10 70.5 554 24.9
Duzib205G0371 Durio zibethinus HOM05D001894 ORTHO05D001752 9.1e-10 69.7 591 21.8
Glyma.17G077400 Glycine max HOM05D001894 ORTHO05D001752 9.1e-10 69.7 181 34.3
MD06G1200700 Malus domestica HOM05D001894 ORTHO05D001752 9.1e-10 69.7 188 32.4
Hma1.2p1_0322F.1_g124800 Hydrangea macrophylla HOM05D001894 ORTHO05D001752 1.2e-09 69.3 478 25.7
Ca_21784_v3 Cicer arietinum L. HOM05D001894 ORTHO05D001752 1.5e-09 68.9 563 24.7
Solyc12g038490.2 Solanum lycopersicum HOM05D001894 ORTHO05D001752 1.5e-09 68.9 354 25.4
Sopen12g018730 Solanum pennellii HOM05D001894 ORTHO05D001752 1.5e-09 68.9 354 25.4
Gorai.008G198000 Gossypium raimondii HOM05D001894 ORTHO05D001752 2.6e-09 68.2 183 32.8
Prupe.5G203400 Prunus persica HOM05D001894 ORTHO05D001752 3.4e-09 67.8 223 30.5
MD14G1210400 Malus domestica HOM05D001894 ORTHO05D001752 4.5e-09 67.4 192 32.8
Medtr4g109420 Medicago truncatula HOM05D001894 ORTHO05D001752 4.5e-09 67.4 550 24.2
Gohir.A09G243300 Gossypium hirsutum HOM05D001894 ORTHO05D001752 5.9e-09 67.0 761 23.1
Gohir.A12G181800 Gossypium hirsutum HOM05D001894 ORTHO05D001752 5.9e-09 67.0 358 25.4
CAN.G4.20 Capsicum annuum HOM05D001894 ORTHO05D001752 7.7e-09 66.6 239 28.9
TPR.G2049 Trifolium pratense HOM05D001894 ORTHO05D001752 1.0e-08 66.2 192 33.3
Duzib068G1120 Durio zibethinus HOM05D001894 ORTHO05D001752 1.3e-08 65.9 533 25.5
Lsat_1_v5_gn_5_23200 Lactuca sativa HOM05D001894 ORTHO05D001752 1.3e-08 65.9 192 35.9
Rhsim08G0147300 Rhododendron simsii HOM05D001894 ORTHO05D001752 1.7e-08 65.5 818 22.0
CANSAT80G0157 Cannabis sativa HOM05D001894 ORTHO05D001752 2.2e-08 65.1 221 30.3
Gohir.A03G069500 Gossypium hirsutum HOM05D001894 ORTHO05D001752 2.2e-08 65.1 307 27.0
Lj4g0026422 Lotus japonicus HOM05D001894 ORTHO05D001752 3.8e-08 64.3 563 25.4
Peaxi162Scf00013g00631 Petunia axillaris HOM05D001894 ORTHO05D001752 3.8e-08 64.3 168 30.4
Actinidia04837 Actinidia chinensis HOM05D001894 ORTHO05D001752 5.0e-08 63.9 554 22.7
Gohir.D09G244000 Gossypium hirsutum HOM05D001894 ORTHO05D001752 5.0e-08 63.9 382 25.9
SalBow7G0716 Salvia bowleyana HOM05D001894 ORTHO05D001752 5.0e-08 63.9 466 23.0
GSVIVG01007885001 Vitis vinifera HOM05D001894 ORTHO05D001752 5.0e-08 63.9 586 24.4
Gohir.D12G184600 Gossypium hirsutum HOM05D001894 ORTHO05D001752 6.5e-08 63.5 179 32.4
Nn3g17426 Nelumbo nucifera HOM05D001894 ORTHO05D001752 1.1e-07 62.8 234 29.1
Nitab4.5_0000361g0020 Nicotiana tabacum HOM05D001894 ORTHO05D001752 1.1e-07 62.8 184 31.5
Sp6g35000 Schrenkiella parvula HOM05D001894 ORTHO05D001752 1.1e-07 62.8 245 30.2
Sc10g0009740 Simmondsia chinensis HOM05D001894 ORTHO05D001752 1.1e-07 62.8 410 24.9
Gorai.007G039700 Gossypium raimondii HOM05D001894 ORTHO05D001752 1.4e-07 62.4 280 24.3
SGA_v2.0_scaffold7G04035 Striga asiatica HOM05D001894 ORTHO05D001752 1.4e-07 62.4 333 27.9
Ah.11g047940 Amaranthus hybridus HOM05D001894 ORTHO05D001752 1.9e-07 62.0 351 26.2
Gohir.A11G033500 Gossypium hirsutum HOM05D001894 ORTHO05D001752 1.9e-07 62.0 282 25.2
PGR044G2115 Punica granatum HOM05D001894 ORTHO05D001752 2.5e-07 61.6 355 25.6
Sopen06g026790 Solanum pennellii HOM05D001894 ORTHO05D001752 2.5e-07 61.6 292 27.1
ECA246G4021 Erigeron canadensis HOM05D001894 ORTHO05D001752 3.2e-07 61.2 603 23.9
Lalb_Chr13g0302921 Lupinus albus HOM05D001894 ORTHO05D001752 3.2e-07 61.2 537 22.5
Hund09881 Selenicereus undatus HOM05D001894 ORTHO05D001752 3.2e-07 61.2 204 30.9
Gohir.D11G036900 Gossypium hirsutum HOM05D001894 ORTHO05D001752 4.2e-07 60.8 283 25.1
Potri.015G056400 Populus trichocarpa HOM05D001894 ORTHO05D001752 4.2e-07 60.8 200 29.0
Solyc06g069500.3 Solanum lycopersicum HOM05D001894 ORTHO05D001752 4.2e-07 60.8 292 27.1
SGA_v2.0_scaffold114G31926 Striga asiatica HOM05D001894 ORTHO05D001752 4.2e-07 60.8 310 27.1
Manes.02G054400 Manihot esculenta HOM05D001894 ORTHO05D001752 5.5e-07 60.5 368 26.4
VMungo1215G1196 Vigna mungo HOM05D001894 ORTHO05D001752 5.5e-07 60.5 205 31.2
MSTRG.22980 Avicennia marina HOM05D001894 ORTHO05D001752 7.2e-07 60.1 579 24.0
Hma1.2p1_0060F.1_g033210 Hydrangea macrophylla HOM05D001894 ORTHO05D001752 7.2e-07 60.1 819 22.7
Ciclev10010896m.g Citrus clementina HOM05D001894 ORTHO05D001752 1.2e-06 59.3 712 22.6
Manes.06G085900 Manihot esculenta HOM05D001894 ORTHO05D001752 1.2e-06 59.3 349 25.8
TAR622G0780 Trochodendron aralioides HOM05D001894 ORTHO05D001752 1.2e-06 59.3 340 26.8
Eucgr.K02518 Eucalyptus grandis HOM05D001894 ORTHO05D001752 1.6e-06 58.9 286 26.9
Sabra15G0081600 Salix brachista HOM05D001894 ORTHO05D001752 1.6e-06 58.9 274 28.5
arahy.Tifrunner.gnm1.ann1.URK1K5 Arachis hypogaea HOM05D001894 ORTHO05D001752 2.1e-06 58.5 661 23.1
arahy.Tifrunner.gnm1.ann1.ZWJH5S Arachis hypogaea HOM05D001894 ORTHO05D001752 2.1e-06 58.5 661 23.6
CSS0001605 Camellia sinensis var. sinensis HOM05D001894 ORTHO05D001752 2.1e-06 58.5 258 27.1
CiPaw.12G007900 Carya illinoinensis HOM05D001894 ORTHO05D001752 2.1e-06 58.5 428 23.6
Lalb_Chr07g0178281 Lupinus albus HOM05D001894 ORTHO05D001752 2.1e-06 58.5 902 22.6
Potri.012G061400 Populus trichocarpa HOM05D001894 ORTHO05D001752 2.1e-06 58.5 189 32.3
Manes.01G095500 Manihot esculenta HOM05D001894 ORTHO05D001752 3.6e-06 57.8 404 25.5
Nitab4.5_0011867g0010 Nicotiana tabacum HOM05D001894 ORTHO05D001752 3.6e-06 57.8 339 25.1
CAN.G587.41 Capsicum annuum HOM05D001894 ORTHO05D001752 4.7e-06 57.4 366 23.5
Cfa019314 Carpinus fangiana HOM05D001894 ORTHO05D001752 4.7e-06 57.4 259 27.4


User provided reference genes

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