Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21589 Brassica carinata HOM05D008885 ORTHO05D006152 5.6e-106 387.5 180 100.0
BcaC03g13143 Brassica carinata HOM05D008885 ORTHO05D006152 4.6e-60 235.0 184 66.8
C02p02150 Brassica napus HOM05D008885 ORTHO05D006152 4.6e-60 235.0 184 66.8
BolC2t06184H Brassica oleracea HOM05D008885 ORTHO05D006152 4.6e-60 235.0 184 66.8
BraA02t04832Z Brassica rapa HOM05D008885 ORTHO05D006152 2.0e-58 229.6 183 67.8
BraA02t04833Z Brassica rapa HOM05D008885 ORTHO05D006152 2.2e-57 226.1 182 65.9
BolC2t06185H Brassica oleracea HOM05D008885 ORTHO05D006152 6.3e-57 224.6 182 64.8
BcaC03g13144 Brassica carinata HOM05D008885 ORTHO05D006152 5.3e-56 221.5 182 63.2
C02p02160 Brassica napus HOM05D008885 ORTHO05D006152 5.3e-56 221.5 182 63.2
BcaB05g21732 Brassica carinata HOM05D008885 ORTHO05D006152 5.9e-55 218.0 184 63.0
BcaB05g21733 Brassica carinata HOM05D008885 ORTHO05D006152 5.9e-55 218.0 184 63.0
BcaB05g21588 Brassica carinata HOM05D008885 ORTHO05D006152 7.7e-55 217.6 184 63.6
BcaB05g21736 Brassica carinata HOM05D008885 ORTHO05D006152 2.8e-49 199.1 183 55.7
BraA02t04831Z Brassica rapa HOM05D008885 ORTHO05D006152 9.1e-48 194.1 186 55.4
BcaC03g13142 Brassica carinata HOM05D008885 ORTHO05D006152 7.7e-47 191.0 186 54.3
BolC2t06182H Brassica oleracea HOM05D008885 ORTHO05D006152 7.7e-47 191.0 186 54.3
BcaB05g21731 Brassica carinata HOM05D008885 ORTHO05D006152 1.2e-42 177.2 159 57.2
AL5G33880 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 2.8e-33 146.0 180 48.3
Carub.0006s0398 Capsella rubella HOM05D008885 ORTHO05D006152 8.3e-33 144.4 168 50.0
CARHR208210 Cardamine hirsuta HOM05D008885 ORTHO05D006152 3.5e-31 139.0 180 47.8
AL6G14830 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 4.5e-31 138.7 161 51.6
Thhalv10015607m.g Eutrema salsugineum HOM05D008885 ORTHO05D006152 6.5e-30 134.8 163 49.7
C02p02170 Brassica napus HOM05D008885 ORTHO05D006152 7.8e-23 111.3 182 41.2
BolC2t06186H Brassica oleracea HOM05D008885 ORTHO05D006152 1.9e-21 106.7 182 37.4
Sp6g37770 Schrenkiella parvula HOM05D008885 ORTHO05D006152 1.9e-21 106.7 177 37.3
AT5G05060 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 3.3e-21 105.9 162 39.5
AT5G05040 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 1.5e-18 97.1 162 36.4
BcaC03g13145 Brassica carinata HOM05D008885 ORTHO05D006152 2.9e-17 92.8 58 72.4
A07p12710 Brassica napus HOM05D008885 ORTHO05D006152 3.7e-17 92.4 163 34.4
BraA07t29049Z Brassica rapa HOM05D008885 ORTHO05D006152 8.3e-17 91.3 163 34.4
Thhalv10015529m.g Eutrema salsugineum HOM05D008885 ORTHO05D006152 1.1e-16 90.9 167 37.7
CARHR208050 Cardamine hirsuta HOM05D008885 ORTHO05D006152 2.4e-16 89.7 158 34.2
Carub.0002s0167 Capsella rubella HOM05D007210 ORTHO05D006152 4.6e-15 85.5 163 31.9
Carub.0006s0396 Capsella rubella HOM05D008885 ORTHO05D006152 2.3e-14 83.2 172 32.0
Carub.0006s0399 Capsella rubella HOM05D008885 ORTHO05D006152 3.0e-14 82.8 62 64.5
AL2G12260 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.9e-13 80.1 164 32.9
C03p93270 Brassica napus HOM05D007210 ORTHO05D006152 2.5e-13 79.7 171 32.7
BolC3t21625H Brassica oleracea HOM05D007210 ORTHO05D006152 2.5e-13 79.7 171 32.7
Carub.0002s0168 Capsella rubella HOM05D007210 ORTHO05D006152 2.5e-13 79.7 163 30.7
A09p13520 Brassica napus HOM05D007210 ORTHO05D006152 4.3e-13 79.0 171 32.7
BraA09t37003Z Brassica rapa HOM05D007210 ORTHO05D006152 4.3e-13 79.0 171 32.2
AT1G63205 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 4.7e-12 75.5 165 32.1
Carub.0002s0166 Capsella rubella HOM05D007210 ORTHO05D006152 1.1e-11 74.3 168 28.6
AT1G63190 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 5.2e-11 72.0 165 29.1
AL2G12250 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 6.8e-11 71.6 164 30.5
A05p10190 Brassica napus HOM05D007210 ORTHO05D006152 2.6e-10 69.7 165 29.7
BraA05t19960Z Brassica rapa HOM05D007210 ORTHO05D006152 2.6e-10 69.7 165 29.7
Carub.0002s0174 Capsella rubella HOM05D007210 ORTHO05D006152 2.6e-10 69.7 168 27.4
Carub.0002s0170 Capsella rubella HOM05D007210 ORTHO05D006152 7.5e-10 68.2 166 28.9
BcaC07g41054 Brassica carinata HOM05D007210 ORTHO05D006152 9.8e-10 67.8 160 28.1
AL2G12300 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.7e-09 67.0 166 30.1
CARHR040780 Cardamine hirsuta HOM05D008885 ORTHO05D006152 2.2e-09 66.6 114 29.8
AT2G37435 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 4.9e-09 65.5 179 28.5
CARHR040800 Cardamine hirsuta HOM05D008885 ORTHO05D006152 1.1e-08 64.3 84 36.9
Sp2g01360 Schrenkiella parvula HOM05D007210 ORTHO05D006152 1.4e-08 63.9 181 31.5
Carub.0002s0171 Capsella rubella HOM05D007210 ORTHO05D006152 2.4e-08 63.2 163 26.4
Carub.0002s0173 Capsella rubella HOM05D007210 ORTHO05D006152 2.4e-08 63.2 91 41.8
BcaB07g31387 Brassica carinata HOM05D007210 ORTHO05D006152 3.2e-08 62.8 163 25.8
AL2G12270 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 4.1e-08 62.4 166 27.7
AT1G63200 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 4.1e-08 62.4 166 27.1
AL2G12280 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 9.2e-08 61.2 150 28.7
AL4G33850 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 9.2e-08 61.2 166 25.9
AL2G12320 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.2e-07 60.8 152 28.3
A09p15630 Brassica napus HOM05D007210 ORTHO05D006152 1.2e-07 60.8 164 26.8
BraA09t37203Z Brassica rapa HOM05D007210 ORTHO05D006152 1.2e-07 60.8 164 26.8
CARHR048280 Cardamine hirsuta HOM05D007210 ORTHO05D006152 2.0e-07 60.1 89 38.2
AL2G12230 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 2.7e-07 59.7 146 28.1
AL2G12220 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.7e-06 57.0 146 27.4
CARHR048270 Cardamine hirsuta HOM05D007210 ORTHO05D006152 2.3e-06 56.6 132 31.1
Thhalv10023855m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 2.3e-06 56.6 172 25.6
BcaB07g31384 Brassica carinata HOM05D007210 ORTHO05D006152 3.9e-06 55.8 152 26.3
Carub.0004s1936 Capsella rubella HOM05D007210 ORTHO05D006152 3.9e-06 55.8 166 25.3
Sp2g04770 Schrenkiella parvula HOM05D007210 ORTHO05D006152 3.9e-06 55.8 90 35.6
Carub.0004s1937 Capsella rubella HOM05D007210 ORTHO05D006152 5.0e-06 55.5 163 27.0
BcaC03g13146 Brassica carinata HOM05D008885 ORTHO05D091662 6.6e-06 55.1 28 85.7
BcaNung06875 Brassica carinata HOM05D007210 ORTHO05D006152 8.6e-06 54.7 88 37.5


User provided reference genes

Program Settings