Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 2.6e-175 619.4 531 100.0
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 1.1e-101 374.8 592 75.8
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 1.4e-101 374.4 588 76.2
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 1.0e-94 351.7 525 77.7
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 1.9e-93 347.4 522 80.3
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 3.0e-83 313.5 548 66.6
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 3.0e-83 313.5 548 66.6
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 3.8e-78 296.6 587 71.0
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 4.4e-66 256.5 565 71.3
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 3.7e-65 253.4 559 70.3
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 3.7e-57 226.9 631 62.1
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 4.3e-53 213.4 619 61.7
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 5.6e-45 186.4 632 62.7
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 3.6e-44 183.7 637 61.9
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 1.5e-42 178.3 636 61.0
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 3.4e-42 177.2 639 61.0
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 2.4e-40 171.0 624 61.1
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 3.2e-40 170.6 561 64.9
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 3.2e-40 170.6 561 64.9
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 4.1e-40 170.2 604 63.2
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 6.0e-39 166.4 638 59.9
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 1.3e-38 165.2 557 63.6
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 1.3e-38 165.2 557 63.6
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 3.9e-38 163.7 609 61.9
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 1.5e-37 161.8 638 57.5
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 3.3e-37 160.6 606 61.6
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 9.6e-37 159.1 610 61.8
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 1.2e-36 158.7 569 64.9
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.1e-35 155.6 593 61.9
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 3.1e-35 154.1 215 49.8
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 1.5e-26 125.2 643 52.4
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 2.0e-26 124.8 643 52.6
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 7.6e-26 122.9 630 53.7
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 9.9e-26 122.5 643 52.7
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 1.3e-25 122.1 640 53.4
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 1.9e-24 118.2 238 37.4
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 1.9e-24 118.2 236 38.1
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 2.4e-24 117.9 646 52.2
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 2.4e-24 117.9 256 36.7
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 3.2e-24 117.5 221 40.7
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 3.2e-24 117.5 572 59.6
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 3.2e-24 117.5 631 53.1
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 4.2e-24 117.1 649 52.2
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 5.4e-24 116.7 658 52.3
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 5.4e-24 116.7 236 38.1
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 9.3e-24 115.9 572 59.6
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 9.3e-24 115.9 235 37.9
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 9.3e-24 115.9 243 35.8
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.6e-23 115.2 228 38.6
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 3.5e-23 114.0 645 52.9
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 4.6e-23 113.6 246 35.8
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 4.6e-23 113.6 238 37.0
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 7.9e-23 112.8 645 52.6
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 1.3e-22 112.1 261 35.6
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 1.8e-22 111.7 250 36.8
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 2.3e-22 111.3 234 38.0
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.3e-22 111.3 246 35.4
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 2.3e-22 111.3 246 36.2
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 2.3e-22 111.3 198 41.4
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 3.0e-22 110.9 250 37.6
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 3.0e-22 110.9 250 36.4
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 3.9e-22 110.5 643 51.8
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 5.1e-22 110.2 648 51.5
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 6.7e-22 109.8 256 35.2
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 6.7e-22 109.8 202 42.1
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 6.7e-22 109.8 230 36.5
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 8.7e-22 109.4 230 35.2
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 8.7e-22 109.4 248 36.3
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 1.1e-21 109.0 255 36.9
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 1.5e-21 108.6 250 36.4
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 1.5e-21 108.6 221 36.7
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 1.9e-21 108.2 238 34.5
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 2.5e-21 107.8 250 37.6
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 2.5e-21 107.8 230 35.7
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 3.3e-21 107.5 249 37.3
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 4.3e-21 107.1 233 33.9
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 5.6e-21 106.7 234 37.2
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 5.6e-21 106.7 234 37.2
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 9.6e-21 105.9 251 36.3
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 9.6e-21 105.9 190 40.5
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 1.3e-20 105.5 231 35.1
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 1.3e-20 105.5 251 35.5
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 2.1e-20 104.8 253 37.2
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 4.8e-20 103.6 248 36.7
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 6.2e-20 103.2 238 33.6
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 8.1e-20 102.8 232 36.6
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 8.1e-20 102.8 230 33.9
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 1.4e-19 102.1 245 33.5
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.4e-19 102.1 244 34.8
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 1.4e-19 102.1 247 34.8
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 2.4e-19 101.3 191 38.7
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 3.1e-19 100.9 256 35.5
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 4.0e-19 100.5 255 35.3
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 4.0e-19 100.5 244 34.4
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 4.0e-19 100.5 244 34.4
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 4.0e-19 100.5 251 34.3
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 9.0e-19 99.4 221 36.7
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 1.5e-18 98.6 244 34.4
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 1.5e-18 98.6 227 34.4
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 1.5e-18 98.6 227 34.4
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 2.6e-18 97.8 166 44.0
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 2.6e-18 97.8 179 40.8
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 9.9e-18 95.9 250 35.2
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 4.9e-17 93.6 243 34.2
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 6.4e-17 93.2 191 36.6
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 8.4e-17 92.8 203 38.4
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.1e-16 92.4 215 34.9
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 1.4e-16 92.0 241 34.4
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 1.4e-16 92.0 199 36.7
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 1.4e-16 92.0 208 34.6
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 1.9e-16 91.7 244 34.0
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.9e-16 91.7 213 34.7
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 1.9e-16 91.7 192 37.0
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 5.5e-16 90.1 167 38.9
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 7.1e-16 89.7 197 35.5
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 7.1e-16 89.7 159 39.0
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 9.3e-16 89.4 198 34.8
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 1.2e-15 89.0 189 37.6
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.2e-15 89.0 244 34.8
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 1.2e-15 89.0 216 33.8
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 1.6e-15 88.6 243 34.2
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 1.6e-15 88.6 245 34.7
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 1.6e-15 88.6 216 33.8
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 2.7e-15 87.8 213 33.8
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 2.7e-15 87.8 247 35.2
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 2.7e-15 87.8 216 33.8
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 3.5e-15 87.4 241 34.0
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.8e-14 85.1 206 35.4
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 3.0e-14 84.3 124 49.2
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 6.7e-14 83.2 214 34.6
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 1.9e-13 81.6 233 33.0
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 1.9e-13 81.6 202 39.1
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 4.3e-13 80.5 193 35.2
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 4.3e-13 80.5 232 31.9
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 9.6e-13 79.3 222 31.1
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 9.6e-13 79.3 222 31.1
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 1.3e-12 79.0 225 33.8
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 1.1e-11 75.9 234 32.5
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 1.4e-11 75.5 160 36.9
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.8e-11 75.1 202 35.1
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 2.4e-11 74.7 152 41.4
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 2.4e-11 74.7 235 30.2
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 3.1e-11 74.3 238 29.0
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 4.0e-11 73.9 231 32.5
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 6.9e-11 73.2 130 35.4
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 6.9e-11 73.2 198 34.8
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 1.2e-10 72.4 235 29.8
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 2.6e-10 71.2 180 34.4
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 2.6e-10 71.2 211 32.2
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 4.5e-10 70.5 194 34.5
HPP92_016461 Vanilla planifolia HOM05D003963 ORTHO05D004558 7.6e-10 69.7 170 34.1
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.7e-09 68.6 202 34.2
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 1.7e-09 68.6 196 34.2
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 2.2e-09 68.2 211 32.7
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 1.9e-08 65.1 180 32.8
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 7.1e-08 63.2 182 31.3
Haze_09990 Corylus avellana HOM05D003963 ORTHO05D004558 1.2e-07 62.4 123 35.8
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 2.1e-07 61.6 210 29.5
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 6.0e-07 60.1 279 28.0
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 7.9e-07 59.7 107 42.1
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 2.3e-06 58.2 204 29.9
Oeu037125.1 Olea europaea HOM05D003963 ORTHO05D004558 3.9e-06 57.4 38 71.1


User provided reference genes

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