Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21519 Brassica carinata HOM05D010370 ORTHO05D012294 7.6e-112 407.1 201 100.0
A02p00250 Brassica napus HOM05D010370 ORTHO05D012294 4.2e-86 321.6 205 79.0
BraA02t05009Z Brassica rapa HOM05D010370 ORTHO05D012294 4.2e-86 321.6 205 79.0
BcaC03g13285 Brassica carinata HOM05D010370 ORTHO05D012294 8.0e-85 317.4 205 78.5
BolC2t06379H Brassica oleracea HOM05D010370 ORTHO05D012294 8.0e-85 317.4 205 78.5
C02p04160 Brassica napus HOM05D010370 ORTHO05D012294 1.7e-82 309.7 205 76.6
BraA03t09778Z Brassica rapa HOM05D010370 ORTHO05D012294 2.0e-67 259.6 209 67.5
A03p04340 Brassica napus HOM05D010370 ORTHO05D012294 3.3e-62 242.3 186 69.4
BolC3t13013H Brassica oleracea HOM05D010370 ORTHO05D012294 8.3e-58 227.6 184 66.3
AL6G20360 Arabidopsis lyrata HOM05D010370 ORTHO05D012294 4.5e-56 221.9 212 61.3
BolC9t59523H Brassica oleracea HOM05D010370 ORTHO05D012294 1.0e-52 210.7 193 63.2
Sp6g33470 Schrenkiella parvula HOM05D010370 ORTHO05D012294 1.0e-52 210.7 176 68.8
Carub.0006s0838 Capsella rubella HOM05D010370 ORTHO05D012294 2.3e-52 209.5 213 60.1
C03p04790 Brassica napus HOM05D010370 ORTHO05D012294 2.0e-51 206.5 184 60.9
AT5G09940 Arabidopsis thaliana HOM05D010370 ORTHO05D012294 9.8e-51 204.1 213 56.8
CARHR203390 Cardamine hirsuta HOM05D010370 ORTHO05D012294 9.8e-51 204.1 215 56.7
BcaB01g05555 Brassica carinata HOM05D010370 ORTHO05D012294 2.7e-48 196.1 184 60.3
Thhalv10015775m.g Eutrema salsugineum HOM05D010370 ORTHO05D012294 1.5e-38 163.7 171 54.4
Sp4g19740 Schrenkiella parvula HOM05D010370 ORTHO05D012294 1.2e-35 154.1 192 50.0
A10p27540 Brassica napus HOM05D002917 ORTHO05D002431 3.5e-32 142.5 132 62.9
BraA10t44806Z Brassica rapa HOM05D002917 ORTHO05D002431 3.5e-32 142.5 132 62.9
C09p67610 Brassica napus HOM05D002917 ORTHO05D002431 7.8e-32 141.4 132 61.4
BcaNung06633 Brassica carinata HOM05D001465 ORTHO05D012294 5.1e-31 138.7 129 62.0
Aa31LG5G22820 Aethionema arabicum HOM05D010370 ORTHO05D012294 2.0e-27 126.7 191 44.0
BcaNung06987 Brassica carinata HOM05D010370 ORTHO05D012294 3.0e-23 112.8 88 68.2
Thhalv10017652m.g Eutrema salsugineum HOM05D010370 ORTHO05D012294 1.6e-21 107.1 207 40.6
Gohir.A13G229100 Gossypium hirsutum HOM05D002619 ORTHO05D002804 2.0e-11 73.6 188 31.9
Lj3g0023082 Lotus japonicus HOM05D002619 ORTHO05D002804 4.9e-10 68.9 170 30.6
COL.COLO4_14874 Corchorus olitorius HOM05D002619 ORTHO05D002804 4.2e-09 65.9 176 31.8
TPR.G34317 Trifolium pratense HOM05D002619 ORTHO05D002804 4.2e-09 65.9 192 28.1
HanXRQChr01g0009911 Helianthus annuus HOM05D002619 ORTHO05D002804 9.3e-09 64.7 185 29.2
Nitab4.5_0000610g0250 Nicotiana tabacum HOM05D002619 ORTHO05D002804 9.3e-09 64.7 164 30.5
MSTRG.12631 Avicennia marina HOM05D002619 ORTHO05D002804 1.6e-08 63.9 164 28.7
THA.LOC104814869 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 2.1e-08 63.5 168 32.7
AUR62001841 Chenopodium quinoa HOM05D002619 ORTHO05D002804 2.7e-08 63.2 120 35.8
Migut.N02660 Erythranthe guttata HOM05D002619 ORTHO05D002804 3.5e-08 62.8 187 31.6
Nitab4.5_0003179g0010 Nicotiana tabacum HOM05D002619 ORTHO05D002804 3.5e-08 62.8 168 30.4
Nitab4.5_0003179g0060 Nicotiana tabacum HOM05D002619 ORTHO05D002804 3.5e-08 62.8 189 27.5
Ah.08g214850 Amaranthus hybridus HOM05D002619 ORTHO05D002804 4.6e-08 62.4 179 29.1
Glyma.15G041400 Glycine max HOM05D002619 ORTHO05D002804 4.6e-08 62.4 161 31.7
Nitab4.5_0000610g0270 Nicotiana tabacum HOM05D002619 ORTHO05D002804 4.6e-08 62.4 158 29.7
HanXRQChr11g0340291 Helianthus annuus HOM05D002619 ORTHO05D002804 6.0e-08 62.0 187 29.4
Oeu041011.1 Olea europaea HOM05D002619 ORTHO05D002804 6.0e-08 62.0 176 26.1
Nitab4.5_0000610g0280 Nicotiana tabacum HOM05D002619 ORTHO05D002804 7.9e-08 61.6 157 29.9
CANSAT54G2555 Cannabis sativa HOM05D002619 ORTHO05D002804 1.0e-07 61.2 201 30.8
Cc01_g12250 Coffea canephora HOM05D002619 ORTHO05D002804 1.0e-07 61.2 167 31.1
Gorai.003G136700 Gossypium raimondii HOM05D002619 ORTHO05D002804 1.0e-07 61.2 190 30.5
Potri.001G235200 Populus trichocarpa HOM05D002619 ORTHO05D002804 1.3e-07 60.8 220 25.9
C09p52230 Brassica napus HOM05D002619 ORTHO05D002804 2.3e-07 60.1 204 29.9
Lj2C22T11 Lonicera japonica HOM05D002307 ORTHO05D002378 2.3e-07 60.1 176 30.7
SalBow1G2722 Salvia bowleyana HOM05D002619 ORTHO05D002804 2.3e-07 60.1 190 30.0
SalBow3G1374 Salvia bowleyana HOM05D002619 ORTHO05D002804 2.3e-07 60.1 190 30.0
Sp6g21430 Schrenkiella parvula HOM05D002619 ORTHO05D002804 2.3e-07 60.1 220 27.3
HPP92_012580 Vanilla planifolia HOM05D002619 ORTHO05D002804 2.3e-07 60.1 163 30.1
Gohir.D03G130000 Gossypium hirsutum HOM05D002619 ORTHO05D002804 3.0e-07 59.7 189 30.7
Hma1.2p1_0035F.1_g022040 Hydrangea macrophylla HOM05D002619 ORTHO05D002804 3.0e-07 59.7 206 28.6
Lalb_Chr24g0394271 Lupinus albus HOM05D002619 ORTHO05D002804 3.9e-07 59.3 207 28.0
Potri.018G024900 Populus trichocarpa HOM05D002619 ORTHO05D002804 3.9e-07 59.3 199 29.1
PGR102G0064 Punica granatum HOM05D002619 ORTHO05D002804 3.9e-07 59.3 162 30.9
Sabra09G0018200 Salix brachista HOM05D002619 ORTHO05D002804 3.9e-07 59.3 183 29.0
Lalb_Chr03g0026881 Lupinus albus HOM05D002619 ORTHO05D002804 5.1e-07 58.9 165 27.3
Sed0024909 Sechium edule HOM05D002619 ORTHO05D002804 5.1e-07 58.9 177 29.9
Lj3g0007491 Lotus japonicus HOM05D002619 ORTHO05D002804 6.7e-07 58.5 179 28.5
vmacro07190 Vaccinium macrocarpon HOM05D002307 ORTHO05D002378 8.7e-07 58.2 40 60.0
HanXRQChr11g0345931 Helianthus annuus HOM05D002307 ORTHO05D002378 1.1e-06 57.8 82 40.2
HanXRQChr11g0346571 Helianthus annuus HOM05D002307 ORTHO05D002378 1.1e-06 57.8 82 40.2
arahy.Tifrunner.gnm1.ann1.J9PDVA Arachis hypogaea HOM05D002619 ORTHO05D002804 1.5e-06 57.4 171 26.9
Potri.009G027100 Populus trichocarpa HOM05D002619 ORTHO05D002804 1.5e-06 57.4 183 27.9
Thecc.10G087300 Theobroma cacao HOM05D002307 ORTHO05D002378 1.5e-06 57.4 166 28.3
Ca_01347_v3 Cicer arietinum L. HOM05D002619 ORTHO05D002804 1.9e-06 57.0 173 30.6
Ca_27691_v3 Cicer arietinum L. HOM05D002619 ORTHO05D002804 1.9e-06 57.0 173 30.6
Cc02_g10710 Coffea canephora HOM05D002307 ORTHO05D002378 1.9e-06 57.0 165 29.1
Rhsim03G0112500 Rhododendron simsii HOM05D002307 ORTHO05D002378 1.9e-06 57.0 39 61.5
RhsimUnG0033000 Rhododendron simsii HOM05D002307 ORTHO05D002378 1.9e-06 57.0 39 61.5
HanXRQChr14g0452081 Helianthus annuus HOM05D002307 ORTHO05D002378 2.5e-06 56.6 153 31.4
Glyma.11G143300 Glycine max HOM05D002619 ORTHO05D002804 3.3e-06 56.2 171 29.2
Medtr2g096360 Medicago truncatula HOM05D002619 ORTHO05D002804 3.3e-06 56.2 163 30.7
Nitab4.5_0003179g0040 Nicotiana tabacum HOM05D002619 ORTHO05D002804 3.3e-06 56.2 155 30.3
Sabra06G0200800 Salix brachista HOM05D002619 ORTHO05D002804 3.3e-06 56.2 192 28.1
Glyma.13G332900 Glycine max HOM05D002619 ORTHO05D002804 4.3e-06 55.8 172 32.0
Gohir.D13G234700 Gossypium hirsutum HOM05D002619 ORTHO05D002804 4.3e-06 55.8 189 29.6
Potri.008G010100 Populus trichocarpa HOM05D002619 ORTHO05D002804 4.3e-06 55.8 179 31.3
PGSC0003DMG400010881 Solanum tuberosum HOM05D002619 ORTHO05D002804 4.3e-06 55.8 153 32.0
Glyma.19G174400 Glycine max HOM05D002619 ORTHO05D002804 5.6e-06 55.5 211 28.9
Sabra06G0201000 Salix brachista HOM05D002619 ORTHO05D002804 5.6e-06 55.5 194 28.4
Sopen06g001280 Solanum pennellii HOM05D002619 ORTHO05D002804 5.6e-06 55.5 158 32.3
SGA_v2.0_scaffold81G26088 Striga asiatica HOM05D002619 ORTHO05D002804 5.6e-06 55.5 70 41.4
Actinidia03780 Actinidia chinensis HOM05D002619 ORTHO05D002804 7.4e-06 55.1 169 30.2
Duzib114G0495 Durio zibethinus HOM05D002307 ORTHO05D002378 7.4e-06 55.1 86 38.4
PGSC0003DMG400015561 Solanum tuberosum HOM05D002619 ORTHO05D002804 7.4e-06 55.1 159 29.6
SGA_v2.0_scaffold62G21376 Striga asiatica HOM05D002307 ORTHO05D002378 7.4e-06 55.1 143 30.1
arahy.Tifrunner.gnm1.ann1.13MW22 Arachis hypogaea HOM05D002619 ORTHO05D002804 9.6e-06 54.7 167 27.5
MSTRG.21180 Avicennia marina HOM05D002619 ORTHO05D002804 9.6e-06 54.7 177 28.8
Duzib106G1267 Durio zibethinus HOM05D002307 ORTHO05D002378 9.6e-06 54.7 39 56.4
Glyma.03G064100 Glycine max HOM05D002307 ORTHO05D002378 9.6e-06 54.7 39 59.0
Lj2P1009T17 Lonicera japonica HOM05D002307 ORTHO05D002378 9.6e-06 54.7 151 34.4


User provided reference genes

Program Settings