Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21517 Brassica carinata HOM05D003304 ORTHO05D003762 1.4e-74 283.1 170 100.0
A02p37880 Brassica napus HOM05D003304 ORTHO05D003762 8.9e-45 184.1 174 60.3
BcaC03g17699 Brassica carinata HOM05D003304 ORTHO05D003762 2.6e-44 182.6 119 78.2
BcaC03g17695 Brassica carinata HOM05D003304 ORTHO05D003762 7.5e-44 181.0 118 78.0
C02p57040 Brassica napus HOM05D003304 ORTHO05D003762 7.5e-44 181.0 118 78.0
BolC2t11774H Brassica oleracea HOM05D003304 ORTHO05D003762 7.5e-44 181.0 118 78.0
BcaB07g34216 Brassica carinata HOM05D003304 ORTHO05D003762 6.0e-41 171.4 195 59.0
BraA02t08771Z Brassica rapa HOM05D003304 ORTHO05D003762 6.6e-40 167.9 125 73.6
BraA06t26773Z Brassica rapa HOM05D003304 ORTHO05D003762 2.0e-28 129.8 133 56.4
A06p38580 Brassica napus HOM05D003304 ORTHO05D003762 2.6e-28 129.4 163 48.5
Carub.0008s0891 Capsella rubella HOM05D003304 ORTHO05D003762 4.4e-28 128.6 217 42.9
BolC7t44491H Brassica oleracea HOM05D003304 ORTHO05D003762 4.1e-26 122.1 141 51.8
AL8G22610 Arabidopsis lyrata HOM05D003304 ORTHO05D003762 9.2e-26 120.9 204 48.5
AT5G49100 Arabidopsis thaliana HOM05D003304 ORTHO05D003762 4.6e-25 118.6 213 45.5
C07p39670 Brassica napus HOM05D003304 ORTHO05D003762 6.0e-25 118.2 128 52.3
Thhalv10004314m.g Eutrema salsugineum HOM05D003304 ORTHO05D003762 6.0e-25 118.2 230 42.2
Sp2g19450 Schrenkiella parvula HOM05D003304 ORTHO05D003762 1.0e-24 117.5 227 46.7
CARHR182640 Cardamine hirsuta HOM05D003304 ORTHO05D003762 3.3e-23 112.5 149 49.0
CARHR081490 Cardamine hirsuta HOM05D003304 ORTHO05D003762 6.6e-16 88.2 137 48.2
AT3G06868 Arabidopsis thaliana HOM05D003304 ORTHO05D003762 5.6e-15 85.1 136 49.3
Thhalv10021990m.g Eutrema salsugineum HOM05D003304 ORTHO05D003762 9.6e-15 84.3 136 44.1
Aa31LG5G17450 Aethionema arabicum HOM05D003304 ORTHO05D003762 1.6e-14 83.6 151 37.7
Carub.0003s0640 Capsella rubella HOM05D003304 ORTHO05D003762 6.2e-14 81.6 136 43.4
FAN07G2181 Fragaria x ananassa HOM05D003304 ORTHO05D003762 1.4e-13 80.5 141 39.0
AL3G18000 Arabidopsis lyrata HOM05D003304 ORTHO05D003762 2.4e-13 79.7 137 50.4
BNapus_Darmor_BZH_scaffold_117p00150 Brassica napus HOM05D003304 ORTHO05D003762 3.1e-13 79.3 137 48.9
BolC1t05580H Brassica oleracea HOM05D003304 ORTHO05D003762 3.1e-13 79.3 192 42.7
FAN17G2918 Fragaria x ananassa HOM05D003304 ORTHO05D003762 5.3e-13 78.6 140 39.3
FAN12G1565 Fragaria x ananassa HOM05D003304 ORTHO05D003762 1.5e-12 77.0 142 35.9
BraA01t04408Z Brassica rapa HOM05D003304 ORTHO05D003762 2.6e-12 76.3 137 48.2
FvH4_4g18460 Fragaria vesca HOM05D003304 ORTHO05D003762 2.6e-12 76.3 142 36.6
ClCG06G005040 Citrullus lanatus HOM05D003304 ORTHO05D003762 4.5e-12 75.5 127 39.4
RcHm_v2.0_Chr4g0422951 Rosa chinensis HOM05D003304 ORTHO05D003762 4.5e-12 75.5 143 36.4
FAN12G0090 Fragaria x ananassa HOM05D003304 ORTHO05D003762 5.8e-12 75.1 142 36.6
Lj6g0014556 Lotus japonicus HOM05D003304 ORTHO05D003762 7.6e-12 74.7 137 36.5
Sed0002765 Sechium edule HOM05D003304 ORTHO05D003762 1.3e-11 73.9 126 38.9
Lalb_Chr13g0303541 Lupinus albus HOM05D003304 ORTHO05D003762 2.2e-11 73.2 134 47.0
MD13G1166900 Malus domestica HOM05D003304 ORTHO05D003762 2.2e-11 73.2 147 37.4
Sp3g05830 Schrenkiella parvula HOM05D003304 ORTHO05D003762 3.8e-11 72.4 120 39.2
A03p34930 Brassica napus HOM05D003304 ORTHO05D003762 6.4e-11 71.6 126 38.1
CiPaw.01G146800 Carya illinoinensis HOM05D003304 ORTHO05D003762 8.4e-11 71.2 147 35.4
Potri.010G012000 Populus trichocarpa HOM05D003304 ORTHO05D003762 8.4e-11 71.2 143 35.7
Sabra08G0152100 Salix brachista HOM05D003304 ORTHO05D003762 1.4e-10 70.5 143 39.9
BcaC05g30564 Brassica carinata HOM05D003304 ORTHO05D003762 1.9e-10 70.1 129 37.2
MELO3C021319.2 Cucumis melo HOM05D003304 ORTHO05D003762 2.4e-10 69.7 127 38.6
MD16G1166700 Malus domestica HOM05D003304 ORTHO05D003762 2.4e-10 69.7 143 35.7
Sabra10G0007700 Salix brachista HOM05D003304 ORTHO05D003762 2.4e-10 69.7 148 37.8
Nitab4.5_0000513g0170 Nicotiana tabacum HOM05D003304 ORTHO05D003762 3.2e-10 69.3 142 37.3
CsaV3_6G023920 Cucumis sativus L. HOM05D003304 ORTHO05D003762 4.2e-10 68.9 125 38.4
Actinidia40286 Actinidia chinensis HOM05D003304 ORTHO05D003762 5.4e-10 68.6 132 41.7
THA.LOC104803101 Tarenaya hassleriana HOM05D003304 ORTHO05D003762 5.4e-10 68.6 200 30.5
Phvul.003G096600 Phaseolus vulgaris HOM05D003304 ORTHO05D003762 7.1e-10 68.2 149 32.9
TWI53G1575 Tripterygium wilfordii HOM05D003304 ORTHO05D003762 9.3e-10 67.8 142 34.5
Glyma.15G149700 Glycine max HOM05D003304 ORTHO05D003762 1.2e-09 67.4 129 36.4
Actinidia19582 Actinidia chinensis HOM05D003304 ORTHO05D003762 2.1e-09 66.6 139 38.1
Nitab4.5_0005362g0020 Nicotiana tabacum HOM05D003304 ORTHO05D003762 2.1e-09 66.6 142 36.6
TWI09G1044 Tripterygium wilfordii HOM05D003304 ORTHO05D003762 2.1e-09 66.6 146 38.4
Thecc.04G287300 Theobroma cacao HOM05D003304 ORTHO05D003762 3.5e-09 65.9 152 32.9
C05p60480 Brassica napus HOM05D003304 ORTHO05D003762 4.6e-09 65.5 120 45.0
Eucgr.B01602 Eucalyptus grandis HOM05D003304 ORTHO05D003762 4.6e-09 65.5 104 36.5
Manes.15G011400 Manihot esculenta HOM05D003304 ORTHO05D003762 4.6e-09 65.5 155 31.6
Duzib052G0413 Durio zibethinus HOM05D003304 ORTHO05D003762 6.0e-09 65.1 143 34.3
Glyma.09G043300 Glycine max HOM05D003304 ORTHO05D003762 6.0e-09 65.1 124 35.5
Gohir.A10G165400 Gossypium hirsutum HOM05D003304 ORTHO05D003762 6.0e-09 65.1 150 42.0
Medtr2g436340 Medicago truncatula HOM05D003304 ORTHO05D003762 6.0e-09 65.1 147 34.0
QL06p009983 Quercus lobata HOM05D003304 ORTHO05D003762 6.0e-09 65.1 163 32.5
QL93p2007_0071 Quercus lobata HOM05D003304 ORTHO05D003762 6.0e-09 65.1 163 32.5
SalBow5G3057 Salvia bowleyana HOM05D003304 ORTHO05D003762 6.0e-09 65.1 123 37.4
VMungo1215G1188 Vigna mungo HOM05D003304 ORTHO05D003762 6.0e-09 65.1 148 33.8
Ca_21485_v3 Cicer arietinum L. HOM05D003304 ORTHO05D003762 7.9e-09 64.7 108 49.1
Eucgr.H03942 Eucalyptus grandis HOM05D003304 ORTHO05D003762 1.0e-08 64.3 101 38.6
Lsat_1_v5_gn_6_95300 Lactuca sativa HOM05D003304 ORTHO05D003762 1.0e-08 64.3 137 33.6
MSTRG.3901 Avicennia marina HOM05D003304 ORTHO05D003762 1.3e-08 63.9 138 34.1
BraA05t22849Z Brassica rapa HOM05D003304 ORTHO05D003762 1.3e-08 63.9 118 47.5
Cpa.g.sc16.193 Carica papaya HOM05D003304 ORTHO05D003762 1.3e-08 63.9 146 40.4
C03p42510 Brassica napus HOM05D003304 ORTHO05D003762 1.8e-08 63.5 124 36.3
BolC3t16521H Brassica oleracea HOM05D003304 ORTHO05D003762 1.8e-08 63.5 124 36.3
Ciclev10004985m.g Citrus clementina HOM05D003304 ORTHO05D003762 1.8e-08 63.5 134 41.8
Aa31sc105G60 Aethionema arabicum HOM05D003304 ORTHO05D003762 2.3e-08 63.2 133 39.8
BolC5t34702H Brassica oleracea HOM05D003304 ORTHO05D003762 3.0e-08 62.8 121 48.8
Cc03_g01680 Coffea canephora HOM05D003304 ORTHO05D003762 3.0e-08 62.8 137 36.5
Gohir.D10G171500 Gossypium hirsutum HOM05D003304 ORTHO05D003762 3.0e-08 62.8 151 38.4
Gorai.011G191600 Gossypium raimondii HOM05D003304 ORTHO05D003762 3.0e-08 62.8 151 39.1
Lalb_Chr18g0051571 Lupinus albus HOM05D003304 ORTHO05D003762 3.0e-08 62.8 111 36.9
Psat4g026560 Pisum sativum HOM05D003304 ORTHO05D003762 3.0e-08 62.8 141 44.0
Oeu001109.1 Olea europaea HOM05D003304 ORTHO05D003762 3.9e-08 62.4 119 37.8
VMungo1309G2051 Vigna mungo HOM05D003304 ORTHO05D003762 5.1e-08 62.0 128 33.6
A05p41260 Brassica napus HOM05D003304 ORTHO05D003762 6.7e-08 61.6 118 36.4
Gorai.006G261600 Gossypium raimondii HOM05D003304 ORTHO05D003762 6.7e-08 61.6 117 38.5
Glyma.17G027500 Glycine max HOM05D003304 ORTHO05D003762 8.7e-08 61.2 117 38.5
CDE02G3640 Ceratophyllum demersum HOM05D003304 ORTHO05D003762 1.1e-07 60.8 113 33.6
ECA240G0321 Erigeron canadensis HOM05D003304 ORTHO05D003762 1.1e-07 60.8 124 35.5
Gohir.D09G238900 Gossypium hirsutum HOM05D003304 ORTHO05D003762 1.1e-07 60.8 117 38.5
THA.LOC104827338 Tarenaya hassleriana HOM05D003304 ORTHO05D003762 1.1e-07 60.8 178 38.2
CsaV3_3G014790 Cucumis sativus L. HOM05D003304 ORTHO05D003762 1.5e-07 60.5 139 33.1
Glyma.07G246500 Glycine max HOM05D003304 ORTHO05D003762 1.5e-07 60.5 121 39.7
TWI73G0854 Tripterygium wilfordii HOM05D003304 ORTHO05D003762 1.5e-07 60.5 144 34.0
MELO3C006676.2 Cucumis melo HOM05D003304 ORTHO05D003762 1.9e-07 60.1 137 37.2
HanXRQChr03g0089411 Helianthus annuus HOM05D003304 ORTHO05D003762 1.9e-07 60.1 131 35.1
Lj4g0014231 Lotus japonicus HOM05D003304 ORTHO05D003762 1.9e-07 60.1 157 31.2
Hund24887 Selenicereus undatus HOM05D003304 ORTHO05D003762 2.5e-07 59.7 124 42.7
Lalb_Chr07g0177821 Lupinus albus HOM05D003304 ORTHO05D003762 3.3e-07 59.3 116 51.7
Oeu006408.1 Olea europaea HOM05D003304 ORTHO05D003762 3.3e-07 59.3 126 34.9
arahy.Tifrunner.gnm1.ann1.8XU14N Arachis hypogaea HOM05D003304 ORTHO05D003762 5.6e-07 58.5 134 33.6
Gohir.A09G238000 Gossypium hirsutum HOM05D003304 ORTHO05D003762 5.6e-07 58.5 117 37.6
Duzib212G1014 Durio zibethinus HOM05D003304 ORTHO05D003762 7.4e-07 58.2 141 33.3
Actinidia14289 Actinidia chinensis HOM05D003304 ORTHO05D003762 9.6e-07 57.8 128 34.4
Phvul.009G249600 Phaseolus vulgaris HOM05D003304 ORTHO05D003762 9.6e-07 57.8 118 33.1
arahy.Tifrunner.gnm1.ann1.IWFQ27 Arachis hypogaea HOM05D003304 ORTHO05D003762 1.3e-06 57.4 105 37.1
CDE09G0254 Ceratophyllum demersum HOM05D003304 ORTHO05D003762 1.6e-06 57.0 113 31.9
COL.COLO4_13834 Corchorus olitorius HOM05D003304 ORTHO05D003762 1.6e-06 57.0 124 44.4
Oeu053986.1 Olea europaea HOM05D003304 ORTHO05D003762 1.6e-06 57.0 128 35.2
Aqoxy3G03400 Aquilegia oxysepala HOM05D003304 ORTHO05D003762 2.8e-06 56.2 110 34.5
Dinv29740 Davidia involucrata HOM05D003304 ORTHO05D003762 2.8e-06 56.2 132 36.4
Lalb_Chr15g0083391 Lupinus albus HOM05D003304 ORTHO05D003762 3.7e-06 55.8 143 34.3
GSVIVG01035139001 Vitis vinifera HOM05D003304 ORTHO05D003762 3.7e-06 55.8 145 34.5
HanXRQChr13g0420021 Helianthus annuus HOM05D003304 ORTHO05D003762 8.1e-06 54.7 117 34.2
Hma1.2p1_0078F.1_g040430 Hydrangea macrophylla HOM05D003304 ORTHO05D003762 8.1e-06 54.7 126 34.1


User provided reference genes

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