Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 2.1e-100 369.0 181 100.0
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 6.7e-99 364.0 181 97.8
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 8.7e-99 363.6 181 97.2
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 1.5e-98 362.8 181 97.2
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 1.3e-97 359.8 181 96.1
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 2.8e-97 358.6 182 97.3
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 2.8e-97 358.6 182 97.3
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 2.8e-97 358.6 182 97.3
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 4.8e-97 357.8 181 95.6
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 8.2e-97 357.1 182 96.7
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 1.1e-96 356.7 181 95.6
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 2.4e-96 355.5 181 95.0
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 2.4e-96 355.5 181 95.0
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 3.1e-96 355.1 182 96.2
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 6.9e-96 354.0 181 95.0
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.2e-95 353.2 181 93.4
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 2.6e-95 352.1 182 95.6
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 1.1e-93 346.7 174 96.0
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.4e-93 346.3 181 91.2
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 2.2e-89 332.4 168 97.0
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 6.3e-89 330.9 169 97.6
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 7.2e-85 317.4 181 82.9
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 1.2e-84 316.6 181 82.3
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 2.1e-84 315.8 176 84.1
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 3.6e-84 315.1 175 85.1
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 4.6e-84 314.7 176 84.1
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 4.6e-84 314.7 176 83.5
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 4.6e-84 314.7 176 83.5
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 7.9e-84 313.9 181 82.3
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 1.4e-83 313.2 176 84.1
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 1.8e-83 312.8 177 82.5
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.3e-83 312.4 176 84.1
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 2.3e-83 312.4 176 84.1
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 2.3e-83 312.4 176 84.1
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 5.1e-83 311.2 181 80.7
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.1e-82 310.1 176 82.4
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 1.5e-82 309.7 176 83.0
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 2.5e-82 308.9 176 83.0
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 5.7e-82 307.8 181 80.7
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.3e-81 306.6 176 82.4
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 2.2e-81 305.8 177 80.2
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 4.8e-81 304.7 181 80.1
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 6.3e-81 304.3 176 83.0
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 8.2e-81 303.9 181 79.0
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 1.1e-80 303.5 177 82.5
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 1.4e-80 303.1 177 82.5
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.4e-80 303.1 176 81.8
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.8e-80 302.8 181 79.6
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 1.8e-80 302.8 169 84.6
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 2.4e-80 302.4 176 81.8
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 2.4e-80 302.4 176 80.1
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 3.1e-80 302.0 178 79.8
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 4.1e-80 301.6 181 80.1
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 4.1e-80 301.6 176 81.8
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 5.3e-80 301.2 178 80.9
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 5.3e-80 301.2 181 80.1
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 6.9e-80 300.8 181 80.7
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 9.1e-80 300.4 178 80.9
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 9.1e-80 300.4 173 82.1
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 1.5e-79 299.7 176 81.8
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 1.5e-79 299.7 178 80.3
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 2.0e-79 299.3 166 85.5
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 2.0e-79 299.3 177 80.8
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.6e-79 298.9 176 79.5
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 3.4e-79 298.5 176 80.7
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 3.4e-79 298.5 180 81.1
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 3.4e-79 298.5 176 79.5
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 4.5e-79 298.1 182 78.0
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 5.9e-79 297.7 181 78.5
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 5.9e-79 297.7 176 79.5
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 7.7e-79 297.4 182 80.8
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.0e-78 297.0 176 79.0
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.3e-78 296.6 181 79.0
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 1.3e-78 296.6 177 79.1
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 1.7e-78 296.2 177 80.2
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 2.2e-78 295.8 176 80.1
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 2.2e-78 295.8 176 80.1
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 2.9e-78 295.4 177 82.5
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 2.9e-78 295.4 180 80.6
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 3.8e-78 295.0 176 80.7
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 3.8e-78 295.0 176 79.5
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 5.0e-78 294.7 176 79.5
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 1.1e-77 293.5 177 81.9
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 1.4e-77 293.1 176 79.5
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 1.4e-77 293.1 176 79.5
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.9e-77 292.7 180 78.9
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 1.9e-77 292.7 181 77.9
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 2.5e-77 292.4 178 78.1
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 3.2e-77 292.0 175 78.9
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 4.2e-77 291.6 177 78.0
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 1.2e-76 290.0 175 77.7
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 1.2e-76 290.0 177 80.8
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 1.2e-76 290.0 180 78.9
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 1.6e-76 289.7 168 82.7
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 3.6e-76 288.5 176 77.3
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 1.4e-75 286.6 177 79.7
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 1.4e-75 286.6 181 76.2
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.8e-75 286.2 168 81.5
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 3.0e-75 285.4 170 78.2
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 3.9e-75 285.0 170 78.2
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 6.7e-75 284.3 168 81.0
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 8.8e-75 283.9 198 71.7
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 1.1e-74 283.5 178 78.1
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.1e-74 283.5 176 76.7
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.1e-74 283.5 176 76.7
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 2.0e-74 282.7 169 80.5
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 2.6e-74 282.3 181 74.0
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 3.3e-74 282.0 169 78.7
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.3e-74 282.0 169 78.7
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 7.4e-74 280.8 200 70.5
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 7.4e-74 280.8 168 77.4
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 1.1e-72 276.9 176 76.1
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.1e-72 275.4 170 77.1
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 2.0e-71 272.7 183 73.8
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 2.0e-71 272.7 183 73.8
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 2.0e-71 272.7 168 78.0
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 4.5e-71 271.6 176 75.0
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 7.7e-71 270.8 168 78.6
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 8.5e-70 267.3 161 78.9
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 1.1e-69 266.9 179 72.6
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 1.9e-69 266.2 181 74.0
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 8.0e-68 260.8 181 71.3
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 1.0e-67 260.4 178 72.5
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 5.2e-67 258.1 168 71.4
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 3.3e-66 255.4 182 68.1
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 4.8e-65 251.5 176 68.8
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 7.0e-64 247.7 253 54.2
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 1.2e-63 246.9 150 78.7
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 4.5e-63 245.0 165 68.5
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 1.0e-59 233.8 166 65.7
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 4.0e-59 231.9 169 65.1
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 8.8e-59 230.7 148 75.0
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 3.3e-58 228.8 166 63.9
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 2.2e-57 226.1 135 84.4
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.8e-56 223.0 176 65.9
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 2.2e-49 199.5 171 56.1
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 3.7e-41 172.2 172 54.1
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 4.5e-39 165.2 100 82.0
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 2.0e-34 149.8 116 66.4
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 7.5e-34 147.9 102 72.5
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 4.9e-33 145.2 171 42.1
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 3.9e-30 135.6 79 79.7
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 2.5e-29 132.9 176 39.8
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 4.9e-25 118.6 75 77.3
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 4.9e-25 118.6 75 77.3
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.3e-22 110.5 64 76.6
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 1.1e-21 107.5 209 39.2
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.3e-21 105.5 52 94.2
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.2e-20 104.0 57 78.9
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 4.7e-20 102.1 165 34.5
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 8.9e-19 97.8 62 75.8
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 1.2e-18 97.4 100 50.0
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 3.4e-18 95.9 165 38.2
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 5.4e-16 88.6 55 70.9
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 1.9e-13 80.1 41 90.2
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 1.9e-13 80.1 41 90.2
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 1.2e-12 77.4 90 45.6
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 4.0e-11 72.4 37 89.2
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 8.9e-11 71.2 88 46.6
BcaB07g33518 Brassica carinata HOM05D001184 ORTHO05D005050 1.2e-10 70.9 43 81.4
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 2.6e-10 69.7 51 66.7
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 4.4e-10 68.9 45 68.9
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 3.8e-09 65.9 38 81.6
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 1.4e-08 63.9 42 73.8
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 4.2e-08 62.4 50 64.0
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 1.6e-07 60.5 35 74.3
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 1.0e-06 57.8 42 61.9


User provided reference genes

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