Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 2.0e-175 619.0 308 100.0
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 2.0e-175 619.0 308 100.0
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 8.2e-174 613.6 308 99.0
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 3.5e-172 608.2 308 97.7
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 2.9e-171 605.1 308 97.4
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 1.0e-163 580.1 308 94.8
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 8.5e-163 577.0 308 91.2
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 9.4e-162 573.5 308 90.6
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 6.8e-160 567.4 308 91.2
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 8.8e-160 567.0 308 89.3
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 1.5e-159 566.2 308 89.9
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 3.4e-159 565.1 308 90.3
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 9.8e-151 537.0 308 86.4
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 9.2e-141 503.8 308 79.9
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 8.9e-128 460.7 306 73.5
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 1.7e-126 456.4 306 72.5
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 2.9e-126 455.7 306 71.2
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 1.1e-125 453.8 302 72.8
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 1.1e-125 453.8 300 74.0
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 1.1e-125 453.8 300 74.0
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 3.2e-125 452.2 305 71.5
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 9.2e-125 450.7 306 72.2
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 2.7e-124 449.1 300 73.0
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 3.5e-124 448.7 302 72.2
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 4.6e-124 448.4 298 72.8
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 1.0e-123 447.2 304 71.4
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 1.0e-123 447.2 302 73.2
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 1.7e-123 446.4 306 71.6
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 1.7e-123 446.4 306 71.6
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 3.0e-123 445.7 302 71.2
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 3.0e-123 445.7 302 70.9
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 3.0e-123 445.7 298 72.5
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 3.9e-123 445.3 300 71.7
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 1.1e-122 443.7 302 71.2
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 1.9e-122 443.0 297 71.4
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 1.9e-122 443.0 302 71.9
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 1.9e-122 443.0 303 71.0
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 2.5e-122 442.6 306 71.2
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 3.3e-122 442.2 302 70.9
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 3.3e-122 442.2 304 69.7
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 4.3e-122 441.8 303 71.0
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 5.6e-122 441.4 301 70.8
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 7.3e-122 441.0 302 70.9
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 9.5e-122 440.7 308 69.2
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 1.2e-121 440.3 303 70.0
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 2.1e-121 439.5 304 70.4
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 2.1e-121 439.5 301 71.1
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 2.1e-121 439.5 300 71.0
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.8e-121 439.1 300 70.0
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 2.8e-121 439.1 304 69.1
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 4.7e-121 438.3 300 71.3
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 6.2e-121 438.0 300 69.0
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 8.1e-121 437.6 300 71.0
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 8.1e-121 437.6 300 70.0
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 8.1e-121 437.6 302 70.2
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 1.1e-120 437.2 300 70.7
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 1.4e-120 436.8 306 69.6
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 1.8e-120 436.4 300 70.7
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 1.8e-120 436.4 300 69.3
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 4.0e-120 435.3 314 69.1
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 6.8e-120 434.5 307 68.1
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 6.8e-120 434.5 300 70.0
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 1.2e-119 433.7 306 69.3
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 1.2e-119 433.7 300 70.3
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 1.2e-119 433.7 300 69.7
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 1.5e-119 433.3 300 70.7
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 1.5e-119 433.3 306 69.9
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 4.4e-119 431.8 322 66.8
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 4.4e-119 431.8 300 68.7
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 5.8e-119 431.4 316 67.7
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 9.9e-119 430.6 284 72.5
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 2.9e-118 429.1 300 70.0
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 8.4e-118 427.6 300 69.7
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 8.4e-118 427.6 300 68.3
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 1.1e-117 427.2 284 74.3
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 5.4e-117 424.9 300 68.7
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 7.1e-117 424.5 313 67.1
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 1.6e-116 423.3 323 65.9
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 1.0e-115 420.6 300 67.3
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 1.0e-115 420.6 284 71.8
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 1.3e-115 420.2 288 71.2
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 8.7e-115 417.5 284 71.5
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 1.5e-114 416.8 300 66.3
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 1.5e-114 416.8 305 65.6
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 1.9e-114 416.4 300 67.3
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 3.3e-114 415.6 299 68.2
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 1.2e-113 413.7 308 66.9
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 2.1e-113 412.9 300 67.0
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 4.7e-113 411.8 300 66.7
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 8.1e-113 411.0 303 66.0
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 1.1e-112 410.6 296 66.6
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 1.8e-112 409.8 343 60.6
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 4.0e-112 408.7 289 68.5
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 1.2e-111 407.1 336 61.9
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 4.4e-111 405.2 286 69.6
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 7.6e-111 404.4 280 71.4
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 1.4e-109 400.2 302 62.6
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 2.4e-109 399.4 300 65.3
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 7.1e-109 397.9 301 61.5
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 1.6e-108 396.7 298 64.8
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 3.5e-108 395.6 354 58.8
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 6.0e-108 394.8 298 64.4
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 1.1e-104 384.0 346 58.4
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 1.1e-98 364.0 303 61.1
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 4.3e-98 362.1 251 70.9
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 1.3e-97 360.5 251 69.7
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 1.3e-94 350.5 298 56.4
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 1.7e-94 350.1 299 59.5
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.2e-94 349.7 293 60.1
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 6.4e-94 348.2 251 66.9
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 1.1e-93 347.4 251 68.5
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 1.4e-93 347.1 281 62.6
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.4e-88 330.5 259 63.7
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 4.9e-86 322.0 206 74.3
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 2.0e-79 300.1 207 69.6
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 1.1e-77 294.3 209 69.9
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 3.2e-77 292.7 331 47.7
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 2.6e-71 273.1 225 63.1
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 4.7e-68 262.3 216 61.6
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.3e-65 254.2 187 66.8
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 1.0e-62 244.6 192 64.1
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 2.2e-62 243.4 307 45.0
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 1.9e-53 213.8 319 39.8
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 1.9e-53 213.8 185 63.2
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 3.6e-52 209.5 149 70.5
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 6.3e-49 198.7 142 69.7
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 1.6e-44 184.1 171 56.7
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 2.2e-41 173.7 300 35.7
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 2.0e-34 150.6 100 71.0
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 4.4e-34 149.4 112 65.2
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 2.7e-31 140.2 110 59.1
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 1.6e-23 114.4 92 63.0
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 2.0e-23 114.0 176 40.9
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 7.3e-21 105.5 67 74.6
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 1.5e-18 97.8 80 62.5
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 1.3e-17 94.7 76 61.8
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 4.9e-17 92.8 86 55.8
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 2.1e-12 77.4 57 66.7
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 8.1e-12 75.5 53 73.6
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 3.1e-11 73.6 40 80.0
SHI25987 Sapria himalayana HOM05D005513 ORTHO05D006848 6.0e-07 59.3 41 61.0


User provided reference genes

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