Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 3.7e-205 718.0 363 100.0
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 3.8e-186 654.8 374 91.4
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 5.0e-186 654.4 374 91.4
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 1.9e-185 652.5 371 91.9
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 2.5e-185 652.1 374 90.9
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 4.8e-181 637.9 364 91.8
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 2.2e-173 612.5 381 84.3
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 2.2e-173 612.5 379 85.0
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 2.2e-173 612.5 379 85.0
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 2.8e-173 612.1 378 84.9
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 4.8e-173 611.3 378 84.9
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 4.8e-173 611.3 378 84.9
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 3.2e-169 598.6 378 84.7
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.8e-167 592.8 377 83.0
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.2e-163 580.1 371 80.9
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.6e-163 578.9 371 81.7
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 5.0e-162 574.7 370 80.3
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 2.8e-157 558.9 370 79.5
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 4.5e-139 498.4 387 71.1
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 3.4e-118 429.1 373 62.5
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.4e-116 423.7 251 86.1
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 4.1e-116 422.2 377 60.5
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 1.6e-115 420.2 386 60.1
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 2.1e-115 419.9 372 62.9
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 1.0e-114 417.5 368 62.8
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 6.6e-114 414.8 383 60.1
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 3.3e-113 412.5 372 60.2
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 5.6e-113 411.8 385 60.3
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 1.2e-112 410.6 373 60.9
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 1.6e-112 410.2 375 60.5
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.6e-112 410.2 376 58.8
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 1.6e-112 410.2 376 58.8
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 2.1e-112 409.8 379 59.6
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 3.6e-112 409.1 361 61.8
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 3.6e-112 409.1 360 60.3
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 8.1e-112 407.9 378 59.5
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 2.4e-111 406.4 373 59.2
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 4.0e-111 405.6 371 60.1
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 5.2e-111 405.2 385 57.7
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 5.2e-111 405.2 372 60.2
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 5.2e-111 405.2 380 58.9
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 1.2e-110 404.1 393 57.0
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 1.5e-110 403.7 388 58.8
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 2.0e-110 403.3 378 59.3
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 2.6e-110 402.9 354 61.3
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 3.4e-110 402.5 358 60.9
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 5.8e-110 401.7 376 59.6
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 7.6e-110 401.4 361 59.6
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 7.6e-110 401.4 369 60.4
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 9.9e-110 401.0 394 57.4
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 9.9e-110 401.0 380 58.2
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.3e-109 400.6 379 58.0
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 2.9e-109 399.4 390 57.9
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 3.8e-109 399.1 358 60.3
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 3.8e-109 399.1 357 59.9
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 3.8e-109 399.1 360 59.4
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 6.4e-109 398.3 374 57.2
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 6.4e-109 398.3 389 56.8
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 1.1e-108 397.5 355 60.6
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 1.9e-108 396.7 374 57.2
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 1.9e-108 396.7 357 59.4
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 1.9e-108 396.7 367 57.5
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 1.9e-108 396.7 389 56.8
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 3.2e-108 396.0 355 60.3
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 4.1e-108 395.6 374 58.0
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 5.4e-108 395.2 368 58.4
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 5.4e-108 395.2 375 58.9
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 5.4e-108 395.2 379 57.3
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 9.2e-108 394.4 358 59.5
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.5e-107 392.5 355 59.7
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.5e-107 392.5 355 59.7
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 3.5e-107 392.5 375 58.9
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 1.0e-106 391.0 394 55.8
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 1.3e-106 390.6 363 58.1
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 1.3e-106 390.6 306 65.7
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.3e-106 389.8 361 57.1
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 5.1e-106 388.7 373 58.4
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 8.7e-106 387.9 364 57.7
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.1e-105 387.5 378 57.4
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 1.1e-105 387.5 387 55.6
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 1.5e-105 387.1 378 54.5
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.9e-105 386.7 376 56.6
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 3.3e-105 386.0 373 57.9
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 3.3e-105 386.0 401 55.9
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 4.3e-105 385.6 396 54.5
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 4.3e-105 385.6 408 54.2
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 4.3e-105 385.6 357 58.3
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 5.6e-105 385.2 368 57.6
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 7.3e-105 384.8 369 58.0
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 7.3e-105 384.8 374 57.2
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 9.6e-105 384.4 372 57.3
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 9.6e-105 384.4 372 56.2
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 1.2e-104 384.0 288 67.0
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 2.8e-104 382.9 382 56.0
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 4.7e-104 382.1 361 56.0
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 4.7e-104 382.1 373 56.0
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 4.7e-104 382.1 373 57.4
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 4.7e-104 382.1 387 54.5
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 6.2e-104 381.7 358 58.1
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 8.1e-104 381.3 394 55.8
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 1.1e-103 380.9 356 58.7
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 1.1e-103 380.9 356 58.7
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 4.0e-103 379.0 288 66.3
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 5.2e-103 378.6 389 52.4
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 6.9e-103 378.3 376 54.3
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 9.0e-103 377.9 377 55.4
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 1.2e-102 377.5 399 53.9
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 1.2e-102 377.5 366 55.2
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 2.0e-102 376.7 356 58.4
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 2.6e-102 376.3 366 54.6
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.3e-101 374.0 373 56.3
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.3e-101 374.0 392 54.6
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 1.7e-101 373.6 383 53.3
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 4.9e-101 372.1 376 55.9
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 2.4e-100 369.8 288 64.6
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 5.4e-100 368.6 369 55.0
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 9.3e-100 367.9 377 54.6
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 9.3e-100 367.9 377 53.6
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 2.1e-99 366.7 311 61.7
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 3.0e-98 362.8 333 58.3
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 1.3e-96 357.5 378 53.2
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 1.3e-96 357.5 368 55.7
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 4.8e-96 355.5 331 57.7
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 8.1e-96 354.8 371 54.4
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 3.1e-95 352.8 288 64.6
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 4.0e-95 352.4 378 48.9
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 6.9e-95 351.7 383 52.2
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 6.9e-95 351.7 382 52.4
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.9e-92 343.6 365 52.6
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 3.2e-92 342.8 291 56.4
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 4.3e-89 332.4 370 52.7
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 1.3e-88 330.9 342 51.8
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 5.3e-87 325.5 509 42.2
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 9.3e-84 314.7 166 94.6
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 7.9e-83 311.6 347 52.2
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.3e-82 310.1 291 58.1
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 5.1e-82 308.9 396 43.4
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 8.7e-82 308.1 374 47.6
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 9.6e-81 304.7 288 57.6
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 2.8e-80 303.1 160 94.4
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 5.0e-61 239.2 186 67.2
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 5.9e-54 215.7 202 61.9
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 1.0e-53 214.9 309 39.2
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 1.6e-51 207.6 299 39.1
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 4.0e-34 149.8 253 39.1
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 4.9e-24 116.3 127 56.7
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 1.7e-21 107.8 276 31.9
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 9.5e-20 102.1 64 78.1
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 2.6e-17 94.0 173 37.0
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 7.5e-17 92.4 285 27.0
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 1.1e-15 88.6 114 52.6
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 1.7e-13 81.3 71 54.9
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 1.2e-09 68.6 122 39.3


User provided reference genes

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