Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21415 Brassica carinata HOM05D004466 ORTHO05D005007 1.8e-52 210.7 341 100.0
BNapus_Darmor_BZH_scaffold_119p00070 Brassica napus HOM05D004466 ORTHO05D005007 3.4e-43 179.9 340 83.2
BNapus_Darmor_BZH_scaffold_97p00360 Brassica napus HOM05D004466 ORTHO05D005007 3.4e-43 179.9 340 83.2
BraA01t04661Z Brassica rapa HOM05D004466 ORTHO05D005007 3.4e-43 179.9 340 83.2
BolC1t05953H Brassica oleracea HOM05D004466 ORTHO05D005007 2.4e-41 173.7 108 89.8
BcaC09g47665 Brassica carinata HOM05D004466 ORTHO05D005007 1.9e-38 164.1 108 86.1
C03p39640 Brassica napus HOM05D004466 ORTHO05D005007 2.5e-30 137.1 110 75.5
A03p32560 Brassica napus HOM05D004466 ORTHO05D005007 9.5e-30 135.2 111 74.8
BraA03t12425Z Brassica rapa HOM05D004466 ORTHO05D005007 9.5e-30 135.2 111 74.8
BcaC01g04521 Brassica carinata HOM05D004466 ORTHO05D005007 1.6e-29 134.4 110 75.5
BolC3t16230H Brassica oleracea HOM05D004466 ORTHO05D005007 4.7e-29 132.9 110 73.6
Sp3g00670 Schrenkiella parvula HOM05D004466 ORTHO05D005007 4.7e-29 132.9 108 75.0
arahy.Tifrunner.gnm1.ann1.5SF4Q5 Arachis hypogaea HOM05D004466 ORTHO05D005007 1.0e-28 131.7 101 73.3
Carub.0003s0069 Capsella rubella HOM05D004466 ORTHO05D005007 1.0e-28 131.7 103 77.7
Thhalv10021975m.g Eutrema salsugineum HOM05D004466 ORTHO05D005007 1.8e-28 131.0 108 74.1
CARHR075570 Cardamine hirsuta HOM05D004466 ORTHO05D005007 4.0e-28 129.8 108 75.0
AT3G01400 Arabidopsis thaliana HOM05D004466 ORTHO05D005007 1.2e-27 128.3 103 75.7
EL10Ac1g02386 Beta vulgaris HOM05D004466 ORTHO05D005007 1.2e-27 128.3 110 70.9
AL3G10800 Arabidopsis lyrata HOM05D004466 ORTHO05D005007 1.5e-27 127.9 103 75.7
AUR62037475 Chenopodium quinoa HOM05D004466 ORTHO05D005007 2.0e-27 127.5 104 70.2
SalBow2G0282 Salvia bowleyana HOM05D004466 ORTHO05D005007 2.0e-27 127.5 103 71.8
AUR62038778 Chenopodium quinoa HOM05D004466 ORTHO05D005007 3.4e-27 126.7 104 69.2
CANSAT25G2973 Cannabis sativa HOM05D004466 ORTHO05D005007 4.4e-27 126.3 107 70.1
Actinidia22693 Actinidia chinensis HOM05D004466 ORTHO05D005007 1.7e-26 124.4 106 66.0
Ah.11g042850 Amaranthus hybridus HOM05D004466 ORTHO05D005007 1.7e-26 124.4 106 69.8
Lj5g0015765 Lotus japonicus HOM05D004466 ORTHO05D005007 1.7e-26 124.4 103 70.9
COL.COLO4_28511 Corchorus olitorius HOM05D004466 ORTHO05D005007 2.2e-26 124.0 106 67.0
Nitab4.5_0003176g0020 Nicotiana tabacum HOM05D004466 ORTHO05D005007 2.2e-26 124.0 106 71.7
VMungo0647G1589 Vigna mungo HOM05D004466 ORTHO05D005007 2.2e-26 124.0 103 70.9
Phvul.001G027300 Phaseolus vulgaris HOM05D004466 ORTHO05D005007 2.9e-26 123.6 103 70.9
RcHm_v2.0_Chr6g0309511 Rosa chinensis HOM05D004466 ORTHO05D005007 3.7e-26 123.2 109 70.6
CAN.G724.22 Capsicum annuum HOM05D004466 ORTHO05D005007 4.9e-26 122.9 106 68.9
Ca_13206_v3 Cicer arietinum L. HOM05D004466 ORTHO05D005007 4.9e-26 122.9 103 70.9
Ca_13220_v3 Cicer arietinum L. HOM05D004466 ORTHO05D005007 4.9e-26 122.9 103 70.9
Peaxi162Scf00081g00189 Petunia axillaris HOM05D004466 ORTHO05D005007 4.9e-26 122.9 106 68.9
THA.LOC104807068 Tarenaya hassleriana HOM05D004466 ORTHO05D005007 4.9e-26 122.9 101 74.3
Actinidia10197 Actinidia chinensis HOM05D004466 ORTHO05D005007 6.4e-26 122.5 106 67.0
Prupe.1G423300 Prunus persica HOM05D004466 ORTHO05D005007 6.4e-26 122.5 109 70.6
CSS0032810 Camellia sinensis var. sinensis HOM05D004466 ORTHO05D005007 8.3e-26 122.1 106 67.0
Cpa.g.sc1323.1 Carica papaya HOM05D004466 ORTHO05D005007 8.3e-26 122.1 109 68.8
Glyma.17G235600 Glycine max HOM05D004466 ORTHO05D005007 1.4e-25 121.3 102 71.6
MSTRG.24373 Avicennia marina HOM05D004466 ORTHO05D005007 1.9e-25 120.9 103 68.9
Medtr1g018180 Medicago truncatula HOM05D004466 ORTHO05D005007 1.9e-25 120.9 103 69.9
Sopen04g031450 Solanum pennellii HOM05D004466 ORTHO05D005007 1.9e-25 120.9 106 69.8
arahy.Tifrunner.gnm1.ann1.X8GJW4 Arachis hypogaea HOM05D004466 ORTHO05D005007 2.4e-25 120.6 107 67.3
Thecc.08G089300 Theobroma cacao HOM05D004466 ORTHO05D005007 3.2e-25 120.2 106 65.1
TPR.G3807 Trifolium pratense HOM05D004466 ORTHO05D005007 3.2e-25 120.2 103 68.9
CsaV3_2G026170 Cucumis sativus L. HOM05D004466 ORTHO05D005007 4.1e-25 119.8 106 67.9
Solyc04g077850.3 Solanum lycopersicum HOM05D004466 ORTHO05D005007 4.1e-25 119.8 106 68.9
arahy.Tifrunner.gnm1.ann1.7QC2VN Arachis hypogaea HOM05D004466 ORTHO05D005007 7.0e-25 119.0 107 66.4
Manes.05G181700 Manihot esculenta HOM05D004466 ORTHO05D005007 7.0e-25 119.0 109 68.8
Nitab4.5_0000164g0040 Nicotiana tabacum HOM05D004466 ORTHO05D005007 7.0e-25 119.0 106 69.8
CAN.G1472.1 Capsicum annuum HOM05D004466 ORTHO05D005007 9.2e-25 118.6 106 67.0
PGSC0003DMG400010616 Solanum tuberosum HOM05D004466 ORTHO05D005007 9.2e-25 118.6 106 67.9
Migut.N02780 Erythranthe guttata HOM05D004466 ORTHO05D005007 1.2e-24 118.2 101 67.3
Gohir.D05G213000 Gossypium hirsutum HOM05D004466 ORTHO05D005007 1.2e-24 118.2 109 63.3
Gorai.009G219600 Gossypium raimondii HOM05D004466 ORTHO05D005007 1.2e-24 118.2 109 63.3
Psat6g016080 Pisum sativum HOM05D004466 ORTHO05D005007 1.2e-24 118.2 103 67.0
Hund05303 Selenicereus undatus HOM05D004466 ORTHO05D005007 1.2e-24 118.2 113 64.6
ClCG08G016440 Citrullus lanatus HOM05D004466 ORTHO05D005007 1.6e-24 117.9 106 67.0
FvH4_2g33150 Fragaria vesca HOM05D004466 ORTHO05D005007 1.6e-24 117.9 106 67.0
FAN15G3659 Fragaria x ananassa HOM05D004466 ORTHO05D005007 1.6e-24 117.9 106 67.0
FAN20G0888 Fragaria x ananassa HOM05D004466 ORTHO05D005007 1.6e-24 117.9 106 67.0
FAN24G3565 Fragaria x ananassa HOM05D004466 ORTHO05D005007 1.6e-24 117.9 106 67.0
Gohir.D06G021100 Gossypium hirsutum HOM05D004466 ORTHO05D005007 1.6e-24 117.9 109 64.2
Gorai.010G025700 Gossypium raimondii HOM05D004466 ORTHO05D005007 1.6e-24 117.9 109 64.2
Oeu048579.1 Olea europaea HOM05D004466 ORTHO05D005007 1.6e-24 117.9 110 67.3
MELO3C010809.2 Cucumis melo HOM05D004466 ORTHO05D005007 2.7e-24 117.1 101 69.3
Gohir.A06G024000 Gossypium hirsutum HOM05D004466 ORTHO05D005007 2.7e-24 117.1 109 64.2
Lsat_1_v5_gn_6_110841 Lactuca sativa HOM05D004466 ORTHO05D005007 2.7e-24 117.1 106 65.1
Sabra14G0010200 Salix brachista HOM05D004466 ORTHO05D005007 2.7e-24 117.1 106 67.0
PGR031G3415 Punica granatum HOM05D004466 ORTHO05D005007 3.5e-24 116.7 101 69.3
QL12p038037 Quercus lobata HOM05D004466 ORTHO05D005007 3.5e-24 116.7 109 64.2
Solyc12g088360.2 Solanum lycopersicum HOM05D004466 ORTHO05D005007 3.5e-24 116.7 107 65.4
Sopen12g030340 Solanum pennellii HOM05D004466 ORTHO05D005007 3.5e-24 116.7 107 65.4
PGSC0003DMG400011545 Solanum tuberosum HOM05D004466 ORTHO05D005007 3.5e-24 116.7 107 65.4
FAN27G1376 Fragaria x ananassa HOM05D004466 ORTHO05D005007 4.6e-24 116.3 106 67.0
Carub.0008s1930 Capsella rubella HOM05D004466 ORTHO05D005007 6.0e-24 115.9 110 67.3
Manes.18G046200 Manihot esculenta HOM05D004466 ORTHO05D005007 6.0e-24 115.9 106 66.0
Aa31LG11G450 Aethionema arabicum HOM05D000781 ORTHO05D000643 7.8e-24 115.5 93 76.3
Potri.002G118800 Populus trichocarpa HOM05D004466 ORTHO05D005007 7.8e-24 115.5 109 67.0
DCAR_008856 Daucus carota HOM05D004466 ORTHO05D005007 1.0e-23 115.2 101 65.3
SGA_v2.0_scaffold28G11831 Striga asiatica HOM05D004466 ORTHO05D005007 1.0e-23 115.2 103 68.9
TWI12G1356 Tripterygium wilfordii HOM05D004466 ORTHO05D005007 1.0e-23 115.2 109 68.8
AT5G58680 Arabidopsis thaliana HOM05D004466 ORTHO05D005007 1.3e-23 114.8 109 66.1
Dinv39225 Davidia involucrata HOM05D004466 ORTHO05D005007 1.3e-23 114.8 101 67.3
Duzib093G0550 Durio zibethinus HOM05D004466 ORTHO05D005007 1.3e-23 114.8 109 64.2
Gohir.A05G209700 Gossypium hirsutum HOM05D004466 ORTHO05D005007 1.7e-23 114.4 109 60.6
Potri.014G016400 Populus trichocarpa HOM05D004466 ORTHO05D005007 1.7e-23 114.4 106 66.0
HanXRQChr05g0150931 Helianthus annuus HOM05D004466 ORTHO05D005007 3.0e-23 113.6 106 63.2
Lalb_Chr24g0399431 Lupinus albus HOM05D004466 ORTHO05D005007 3.0e-23 113.6 106 65.1
PSO541G3943 Papaver somniferum HOM05D004466 ORTHO05D005007 3.0e-23 113.6 106 63.2
CiPaw.08G050300 Carya illinoinensis HOM05D004466 ORTHO05D005007 3.9e-23 113.2 100 68.0
Duzib116G0878 Durio zibethinus HOM05D004466 ORTHO05D005007 3.9e-23 113.2 107 61.7
Lalb_Chr23g0267481 Lupinus albus HOM05D004466 ORTHO05D005007 3.9e-23 113.2 98 67.3
Nn1g04570 Nelumbo nucifera HOM05D004466 ORTHO05D005007 3.9e-23 113.2 103 63.1
Nitab4.5_0008551g0020 Nicotiana tabacum HOM05D004466 ORTHO05D005007 3.9e-23 113.2 101 68.3
Sabra02G0093300 Salix brachista HOM05D004466 ORTHO05D005007 5.0e-23 112.8 106 65.1
A02p07600 Brassica napus HOM05D004466 ORTHO05D005007 6.6e-23 112.5 109 62.4
CARHR272590 Cardamine hirsuta HOM05D004466 ORTHO05D005007 8.6e-23 112.1 95 72.6
Cfa013783 Carpinus fangiana HOM05D004466 ORTHO05D005007 8.6e-23 112.1 106 64.2
Haze_22442 Corylus avellana HOM05D004466 ORTHO05D005007 8.6e-23 112.1 106 64.2
Lsat_1_v5_gn_4_131680 Lactuca sativa HOM05D004466 ORTHO05D005007 8.6e-23 112.1 109 65.1
BcaB05g22442 Brassica carinata HOM05D004466 ORTHO05D005007 1.1e-22 111.7 109 62.4
BcaC03g14081 Brassica carinata HOM05D004466 ORTHO05D005007 1.1e-22 111.7 109 63.3
C02p13190 Brassica napus HOM05D004466 ORTHO05D005007 1.1e-22 111.7 109 63.3
BolC2t07437H Brassica oleracea HOM05D004466 ORTHO05D005007 1.1e-22 111.7 109 63.3
PSO675G2436 Papaver somniferum HOM05D004466 ORTHO05D005007 1.1e-22 111.7 106 62.3
Lj4C71G1 Lonicera japonica HOM05D004466 ORTHO05D005007 1.5e-22 111.3 100 67.0
MD08G1084400 Malus domestica HOM05D004466 ORTHO05D005007 1.5e-22 111.3 107 64.5
MD15G1070600 Malus domestica HOM05D004466 ORTHO05D005007 1.5e-22 111.3 107 65.4
Sed0012154 Sechium edule HOM05D004466 ORTHO05D005007 1.5e-22 111.3 101 66.3
TAR628G0196 Trochodendron aralioides HOM05D004466 ORTHO05D005007 1.9e-22 110.9 106 64.2
VMungo1309G1223 Vigna mungo HOM05D004466 ORTHO05D005007 1.9e-22 110.9 90 73.3
BraA02t05837Z Brassica rapa HOM05D004466 ORTHO05D005007 2.5e-22 110.5 109 61.5
Dinv44956 Davidia involucrata HOM05D004466 ORTHO05D005007 2.5e-22 110.5 106 63.2
Nitab4.5_0002314g0090 Nicotiana tabacum HOM05D004466 ORTHO05D005007 2.5e-22 110.5 103 66.0
Oeu037491.1 Olea europaea HOM05D004466 ORTHO05D005007 2.5e-22 110.5 104 64.4
Ciclev10001676m.g Citrus clementina HOM05D004466 ORTHO05D005007 7.3e-22 109.0 109 63.3
CiPaw.07G175300 Carya illinoinensis HOM05D004466 ORTHO05D005007 9.5e-22 108.6 115 58.3
Duzib041G0270 Durio zibethinus HOM05D004466 ORTHO05D005007 1.2e-21 108.2 109 58.7
Phvul.009G071200 Phaseolus vulgaris HOM05D004466 ORTHO05D005007 1.2e-21 108.2 88 71.6
Sc02g0007860 Simmondsia chinensis HOM05D004466 ORTHO05D005007 2.1e-21 107.5 107 64.5
Atru.chr13.826 Acer truncatum HOM05D004466 ORTHO05D005007 3.6e-21 106.7 109 63.3
ECA246G0704 Erigeron canadensis HOM05D004466 ORTHO05D005007 3.6e-21 106.7 98 62.2
Eucgr.F00081 Eucalyptus grandis HOM05D004466 ORTHO05D005007 4.7e-21 106.3 114 59.6
AL8G34960 Arabidopsis lyrata HOM05D004466 ORTHO05D005007 6.2e-21 105.9 104 67.3
Cc10_g05750 Coffea canephora HOM05D004466 ORTHO05D005007 1.1e-20 105.1 115 59.1
Peaxi162Scf00160g00417 Petunia axillaris HOM05D004466 ORTHO05D005007 1.4e-20 104.8 106 61.3
Hma1.2p1_0210F.1_g089460 Hydrangea macrophylla HOM05D004466 ORTHO05D005007 2.3e-20 104.0 106 60.4
GSVIVG01009347001 Vitis vinifera HOM05D004466 ORTHO05D005007 4.0e-20 103.2 98 66.3
MBI16_g25188_MAGBIO Magnolia biondii HOM05D004466 ORTHO05D005007 5.2e-20 102.8 106 58.5
Aqoxy6G02640 Aquilegia oxysepala HOM05D004466 ORTHO05D005007 6.8e-20 102.4 111 61.3
TAR376G0077 Trochodendron aralioides HOM05D004466 ORTHO05D005007 1.5e-19 101.3 101 65.3
Lj5g0004498 Lotus japonicus HOM05D004466 ORTHO05D005007 3.4e-19 100.1 102 61.8
Aqoxy5G00875 Aquilegia oxysepala HOM05D004466 ORTHO05D005007 4.4e-19 99.8 93 65.6
Lj4A758T66 Lonicera japonica HOM05D004466 ORTHO05D005007 2.9e-18 97.1 103 62.1
Sc26g0004200 Simmondsia chinensis HOM05D004466 ORTHO05D005007 1.1e-17 95.1 110 56.4
unitig_744.g24128 Utricularia gibba HOM05D004466 ORTHO05D005007 7.1e-17 92.4 107 57.9
Medtr3g103050 Medicago truncatula HOM05D004466 ORTHO05D005007 9.2e-17 92.0 91 62.6
Rhsim06G0062200 Rhododendron simsii HOM05D004466 ORTHO05D005007 3.5e-16 90.1 113 51.3
THA.LOC104825776 Tarenaya hassleriana HOM05D004466 ORTHO05D005007 7.8e-16 89.0 79 68.4
CDE02G1813 Ceratophyllum demersum HOM05D004466 ORTHO05D005007 1.0e-15 88.6 107 55.1
Nn1g04992 Nelumbo nucifera HOM05D004466 ORTHO05D005007 1.0e-15 88.6 102 51.0
HPP92_024912 Vanilla planifolia HOM05D004466 ORTHO05D005007 5.1e-15 86.3 123 47.2
ATR1153G116 Amborella trichopoda HOM05D004466 ORTHO05D005007 6.6e-15 85.9 88 56.8
Glyma.06G045900 Glycine max HOM05D004466 ORTHO05D005007 6.6e-15 85.9 88 62.5
PGR083G1484 Punica granatum HOM05D004466 ORTHO05D005007 1.5e-14 84.7 96 58.3
HPP92_024911 Vanilla planifolia HOM05D004466 ORTHO05D005007 3.3e-14 83.6 121 44.6
Hma1.2p1_0819F.1_g223730 Hydrangea macrophylla HOM05D004466 ORTHO05D005007 1.2e-11 75.1 73 67.1
Ca_04074_v3 Cicer arietinum L. HOM05D000269 ORTHO05D005007 5.4e-09 66.2 75 58.7
Os07g0587500 Oryza sativa ssp. japonica HOM05D000215 ORTHO05D005007 3.5e-08 63.5 86 48.8
Zm00001eb326060 Zea mays HOM05D000215 ORTHO05D005007 1.7e-07 61.2 86 45.3
Glyma.14G088900 Glycine max HOM05D004466 ORTHO05D005007 3.0e-07 60.5 65 83.1
BolC5t32158H Brassica oleracea HOM05D015858 ORTHO05D015449 5.1e-07 59.7 52 71.2
C05p34260 Brassica napus HOM05D015858 ORTHO05D015449 8.6e-07 58.9 53 67.9
Ca_15905_v3 Cicer arietinum L. HOM05D004466 ORTHO05D005007 8.6e-07 58.9 54 63.0


User provided reference genes

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