Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 9.2e-216 753.4 425 100.0
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 1.3e-148 530.4 487 67.1
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 4.8e-148 528.5 487 66.9
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 7.2e-144 514.6 475 66.5
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 1.7e-140 503.4 476 66.2
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 7.0e-131 471.5 451 66.3
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 6.1e-127 458.4 506 58.3
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 1.2e-119 434.1 470 59.4
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 3.0e-118 429.5 468 62.6
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 9.8e-109 397.9 460 58.0
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 1.0e-105 387.9 440 57.0
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 5.6e-104 382.1 468 53.8
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 5.6e-104 382.1 468 53.8
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 2.0e-98 363.6 446 56.5
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 2.7e-98 363.2 446 56.5
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 3.3e-96 356.3 479 52.8
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 1.4e-94 350.9 497 52.5
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 5.8e-93 345.5 571 44.0
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 2.4e-91 340.1 652 40.3
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 3.3e-88 329.7 520 46.0
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 3.7e-84 316.2 648 39.5
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 1.9e-80 303.9 553 42.5
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 1.6e-55 221.1 453 37.7
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 3.7e-55 219.9 595 33.6
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 1.2e-50 204.9 417 38.6
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 7.9e-50 202.2 438 39.5
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 2.4e-46 190.7 129 72.1
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 7.4e-40 169.1 425 36.5
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 1.8e-38 164.5 462 35.9
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 3.1e-38 163.7 440 36.4
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 3.1e-38 163.7 443 34.1
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 9.0e-38 162.2 433 33.5
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 1.2e-37 161.8 452 33.4
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 5.9e-37 159.5 424 31.6
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.9e-35 154.5 455 29.5
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 1.9e-35 154.5 457 31.9
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 7.2e-35 152.5 474 31.2
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 1.2e-34 151.8 504 32.9
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 1.6e-34 151.4 468 29.1
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 1.6e-34 151.4 113 72.6
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 2.1e-34 151.0 427 30.7
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 2.7e-34 150.6 445 33.0
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 3.6e-34 150.2 433 31.9
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 3.6e-34 150.2 477 31.9
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 7.9e-34 149.1 419 32.0
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.4e-33 148.3 424 31.8
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.4e-33 148.3 424 31.8
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 3.9e-33 146.7 418 31.6
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 8.8e-33 145.6 428 32.9
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 1.1e-32 145.2 434 32.7
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 3.3e-32 143.7 478 30.8
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 4.3e-32 143.3 435 33.6
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 5.7e-32 142.9 428 32.0
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 2.2e-31 141.0 476 30.0
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 2.2e-31 141.0 428 32.9
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 2.8e-31 140.6 435 31.5
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 8.2e-31 139.0 480 28.5
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 1.8e-30 137.9 432 31.9
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 4.1e-30 136.7 424 32.1
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 6.9e-30 136.0 421 29.9
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 9.1e-30 135.6 471 28.7
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 9.1e-30 135.6 427 32.1
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 1.2e-29 135.2 457 30.0
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 1.2e-29 135.2 429 33.8
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 2.0e-29 134.4 451 31.3
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 2.6e-29 134.0 412 31.3
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 5.9e-29 132.9 425 30.6
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 5.9e-29 132.9 448 30.1
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 1.0e-28 132.1 430 30.7
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 1.3e-28 131.7 453 30.0
BcaC08g43040 Brassica carinata HOM05D010442 ORTHO05D010690 1.7e-28 131.3 120 57.5
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 5.0e-28 129.8 431 28.5
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 6.5e-28 129.4 136 48.5
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 6.5e-28 129.4 140 52.1
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 8.5e-28 129.0 231 36.4
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 1.1e-27 128.6 489 29.2
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 1.4e-27 128.3 515 28.7
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.4e-27 128.3 516 28.9
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 1.9e-27 127.9 445 30.3
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.9e-27 127.9 282 34.8
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 2.5e-27 127.5 436 29.6
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 2.5e-27 127.5 440 30.9
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 2.5e-27 127.5 440 30.9
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 2.5e-27 127.5 456 31.8
C06p03000 Brassica napus HOM05D010442 ORTHO05D010690 4.2e-27 126.7 163 50.3
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 5.5e-27 126.3 105 53.3
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 5.5e-27 126.3 422 31.0
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 7.2e-27 125.9 126 54.8
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 9.4e-27 125.6 472 27.8
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 1.6e-26 124.8 417 29.5
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 1.6e-26 124.8 441 31.5
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 1.6e-26 124.8 424 30.2
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 2.1e-26 124.4 482 29.0
A06p04460 Brassica napus HOM05D010442 ORTHO05D010690 3.6e-26 123.6 164 50.0
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 4.7e-26 123.2 537 27.6
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 6.1e-26 122.9 452 29.0
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 6.1e-26 122.9 119 54.6
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 1.4e-25 121.7 443 30.5
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 1.8e-25 121.3 473 29.8
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 2.3e-25 120.9 440 30.5
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 6.7e-25 119.4 124 50.0
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 6.7e-25 119.4 436 28.0
BolC6t35423H Brassica oleracea HOM05D010442 ORTHO05D010690 8.8e-25 119.0 171 45.0
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 3.3e-24 117.1 424 32.1
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 7.4e-24 115.9 470 27.9
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 1.7e-23 114.8 421 28.0
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.8e-23 114.0 142 42.3
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 3.7e-23 113.6 142 42.3
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 8.2e-23 112.5 481 26.8
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 1.1e-22 112.1 133 45.1
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.4e-22 111.7 105 52.4
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.8e-22 111.3 135 43.0
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 1.8e-22 111.3 511 28.4
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 4.1e-22 110.2 527 25.2
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 5.3e-22 109.8 435 27.1
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 1.5e-21 108.2 445 31.7
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 4.5e-21 106.7 131 45.8
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 4.5e-21 106.7 521 26.5
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 7.7e-21 105.9 510 25.7
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 1.3e-20 105.1 538 26.2
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.7e-20 104.8 535 28.6
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 2.2e-20 104.4 432 26.6
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 2.9e-20 104.0 453 28.0
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 6.5e-20 102.8 430 26.0
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 6.5e-20 102.8 422 27.5
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 1.1e-19 102.1 130 42.3
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 2.5e-19 100.9 536 27.1
BcaB07g33758 Brassica carinata HOM05D010442 ORTHO05D010690 1.2e-18 98.6 171 44.4
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 1.6e-18 98.2 523 26.4
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 2.1e-18 97.8 431 28.3
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 2.1e-18 97.8 444 27.7
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 4.7e-18 96.7 133 40.6
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 4.7e-18 96.7 424 26.2
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.0e-17 95.5 104 47.1
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 3.9e-17 93.6 416 25.7
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 1.5e-16 91.7 405 29.9
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 2.0e-16 91.3 109 44.0
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 9.7e-16 89.0 109 42.2
BcaC01g04549 Brassica carinata HOM05D004833 ORTHO05D005671 4.8e-15 86.7 65 70.8
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 3.1e-14 84.0 439 24.8
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 1.6e-13 81.6 98 43.9
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 2.5e-11 74.3 114 36.8
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 2.3e-09 67.8 49 57.1
Medtr3g092440 Medicago truncatula HOM05D004833 ORTHO05D005671 6.8e-09 66.2 61 55.7
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 1.2e-08 65.5 97 39.2
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 2.6e-08 64.3 41 65.9
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 1.3e-07 62.0 131 31.3
CiPaw.01G189200 Carya illinoinensis HOM05D004833 ORTHO05D005671 1.7e-07 61.6 163 30.7
Psat4g211200 Pisum sativum HOM05D004938 ORTHO05D006035 3.7e-07 60.5 152 30.9
Lj1g0006253 Lotus japonicus HOM05D004938 ORTHO05D006035 6.3e-07 59.7 154 30.5
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 6.3e-07 59.7 113 31.9
Glyma.01G239700 Glycine max HOM05D004938 ORTHO05D006035 1.1e-06 58.9 131 32.8
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 1.1e-06 58.9 96 34.4
SGA_v2.0_scaffold93G28322 Striga asiatica HOM05D004184 ORTHO05D004863 1.1e-06 58.9 58 46.6
Ca_24383_v3 Cicer arietinum L. HOM05D004938 ORTHO05D006035 1.4e-06 58.5 152 30.9
Sabra10G0051800 Salix brachista HOM05D004938 ORTHO05D006035 1.8e-06 58.2 112 35.7
Manes.15G025800 Manihot esculenta HOM05D004938 ORTHO05D006035 2.4e-06 57.8 149 31.5
Thhalv10013082m.g Eutrema salsugineum HOM05D004938 ORTHO05D006035 4.1e-06 57.0 151 33.8
Potri.008G149700 Populus trichocarpa HOM05D004938 ORTHO05D006035 4.1e-06 57.0 112 34.8
SalBow5G1669 Salvia bowleyana HOM05D004938 ORTHO05D006035 4.1e-06 57.0 155 31.6
SalBow5G2418 Salvia bowleyana HOM05D004938 ORTHO05D006035 4.1e-06 57.0 155 31.6
TPR.G38053 Trifolium pratense HOM05D004938 ORTHO05D006035 4.1e-06 57.0 145 31.7
A10p20400 Brassica napus HOM05D004938 ORTHO05D006035 5.3e-06 56.6 151 32.5
Migut.N00168 Erythranthe guttata HOM05D004938 ORTHO05D006035 5.3e-06 56.6 155 32.9
CBR_g21751 Chara braunii HOM05D004833 ORTHO05D005671 7.0e-06 56.2 99 36.4
Medtr5g005810 Medicago truncatula HOM05D004938 ORTHO05D006035 7.0e-06 56.2 152 29.6
Phvul.002G047600 Phaseolus vulgaris HOM05D004938 ORTHO05D006035 7.0e-06 56.2 152 28.9
Os03g0809700 Oryza sativa ssp. japonica HOM05D004938 ORTHO05D006035 9.1e-06 55.8 143 31.5
Potri.010G091500 Populus trichocarpa HOM05D004938 ORTHO05D006035 9.1e-06 55.8 109 33.0
VMungo1215G0596 Vigna mungo HOM05D004938 ORTHO05D006035 9.1e-06 55.8 152 28.9


User provided reference genes

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