Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 1.6e-165 586.3 346 100.0
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 1.2e-149 533.5 346 84.4
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 2.7e-149 532.3 346 89.3
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 4.6e-149 531.6 346 89.9
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 4.6e-149 531.6 346 89.3
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 7.9e-149 530.8 347 90.2
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 1.5e-147 526.6 347 92.2
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 8.2e-146 520.8 349 88.0
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 3.1e-145 518.8 349 88.8
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 1.2e-144 516.9 346 82.9
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 7.9e-141 504.2 350 87.4
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 6.3e-130 468.0 346 67.3
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 8.2e-130 467.6 346 78.6
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 2.0e-128 463.0 346 67.6
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 2.0e-128 463.0 346 68.2
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 7.7e-128 461.1 348 79.0
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 7.7e-128 461.1 348 73.0
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 1.2e-125 453.8 352 67.6
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 1.2e-125 453.8 346 65.3
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 1.6e-125 453.4 346 68.5
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.6e-125 453.4 346 66.2
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 2.1e-125 453.0 346 68.5
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 3.6e-125 452.2 350 64.0
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 4.7e-125 451.8 346 65.9
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 7.9e-125 451.1 341 67.7
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.4e-124 450.3 341 75.7
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.8e-124 449.9 342 64.9
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 2.3e-124 449.5 346 67.9
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.0e-124 449.1 339 68.1
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.1e-123 447.2 342 63.5
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 1.5e-123 446.8 300 89.3
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 1.5e-123 446.8 349 67.9
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 3.3e-123 445.7 343 67.6
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.4e-123 445.3 346 65.0
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 4.4e-123 445.3 350 64.3
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 4.4e-123 445.3 347 63.4
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.7e-122 443.4 348 74.1
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 6.3e-122 441.4 349 65.3
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.1e-121 440.7 351 66.7
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.1e-121 439.1 358 62.0
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 4.1e-121 438.7 341 65.1
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 5.3e-121 438.3 346 64.7
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 1.2e-120 437.2 347 62.5
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 3.4e-120 435.6 350 63.1
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 4.5e-120 435.3 346 68.5
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 4.5e-120 435.3 341 63.6
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 4.5e-120 435.3 346 65.6
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 5.9e-120 434.9 347 61.7
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 5.9e-120 434.9 340 73.8
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 7.7e-120 434.5 346 63.0
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 1.0e-119 434.1 346 63.6
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 2.9e-119 432.6 343 63.3
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 5.0e-119 431.8 346 62.4
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 8.5e-119 431.0 343 74.9
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 8.5e-119 431.0 346 62.4
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 1.9e-118 429.9 346 62.7
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.5e-118 429.5 346 65.9
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 5.5e-118 428.3 347 62.2
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 5.5e-118 428.3 347 64.6
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 1.2e-117 427.2 323 82.7
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.6e-117 426.8 346 63.3
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.6e-117 426.8 351 73.2
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 4.7e-117 425.2 346 63.3
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 6.1e-117 424.9 348 72.4
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 1.0e-116 424.1 349 62.5
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 2.3e-116 422.9 346 67.6
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 3.9e-116 422.2 348 61.8
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 6.7e-116 421.4 346 65.3
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.8e-116 421.0 346 65.0
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.1e-115 420.6 342 62.3
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 2.0e-115 419.9 341 63.9
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 3.3e-115 419.1 342 62.0
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 4.4e-115 418.7 340 63.5
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 4.4e-115 418.7 346 66.5
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 8.2e-114 414.5 342 65.5
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 1.1e-113 414.1 346 64.7
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 1.2e-112 410.6 342 59.4
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 1.2e-112 410.6 348 69.5
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 1.6e-112 410.2 343 63.3
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.0e-112 409.8 350 60.6
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 2.6e-112 409.5 358 60.3
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 5.9e-112 408.3 342 61.1
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 7.7e-112 407.9 342 64.3
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.0e-111 407.5 349 61.3
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.0e-111 407.5 349 61.3
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 1.3e-111 407.1 368 57.9
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 1.3e-111 407.1 344 61.6
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.7e-111 406.8 350 63.1
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 2.9e-111 406.0 349 63.0
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 3.8e-111 405.6 341 60.1
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 3.8e-111 405.6 282 89.0
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 8.5e-111 404.4 343 64.1
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 8.5e-111 404.4 346 62.7
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 2.5e-110 402.9 341 69.5
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 3.2e-110 402.5 346 62.7
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 7.2e-110 401.4 346 63.6
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 9.4e-110 401.0 353 60.3
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.1e-109 399.8 345 63.2
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 4.7e-109 398.7 342 57.9
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.0e-108 397.5 345 62.6
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.4e-108 397.1 341 63.3
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 2.3e-108 396.4 341 61.3
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 3.0e-108 396.0 354 61.3
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 4.0e-108 395.6 279 88.9
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 4.0e-108 395.6 344 59.9
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 5.2e-108 395.2 343 60.9
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 2.0e-107 393.3 347 62.5
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 2.0e-107 393.3 326 61.0
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 2.6e-107 392.9 446 49.8
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 1.3e-106 390.6 344 64.5
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 1.7e-106 390.2 346 61.0
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 1.4e-105 387.1 348 60.6
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 1.8e-105 386.7 344 60.2
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 3.5e-104 382.5 342 59.4
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 3.5e-104 382.5 347 55.9
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 4.5e-104 382.1 342 55.3
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.5e-102 376.3 346 54.3
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.5e-102 376.3 356 66.9
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 4.2e-102 375.6 425 60.0
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.0e-100 370.9 342 55.8
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 1.4e-100 370.5 345 54.2
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 6.8e-100 368.2 307 60.3
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.5e-99 367.1 342 53.5
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 5.7e-99 365.2 345 53.3
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 2.8e-98 362.8 346 52.0
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 8.3e-98 361.3 356 55.6
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.1e-97 360.9 349 53.0
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.3e-95 354.0 305 63.3
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 3.6e-93 345.9 343 51.3
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 4.7e-93 345.5 342 54.7
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 6.1e-93 345.1 344 56.1
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 5.2e-92 342.0 247 89.5
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 1.5e-91 340.5 341 52.2
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 2.0e-91 340.1 244 86.9
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 2.6e-91 339.7 292 63.7
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 3.4e-91 339.3 252 66.7
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.3e-90 337.4 292 59.9
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 1.7e-90 337.0 342 53.2
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 2.7e-88 329.7 337 51.3
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 5.0e-87 325.5 244 88.1
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 1.1e-86 324.3 294 61.2
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 4.1e-81 305.8 346 49.1
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 2.9e-74 283.1 297 57.6
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 4.9e-74 282.3 172 77.3
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 7.0e-73 278.5 338 42.6
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 7.0e-73 278.5 340 45.0
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.3e-71 273.5 245 58.4
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 2.5e-70 270.0 343 39.7
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 1.4e-68 264.2 246 61.0
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 5.2e-68 262.3 277 53.8
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 1.2e-67 261.2 252 55.6
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.6e-67 260.0 238 57.6
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 3.2e-65 253.1 349 39.3
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 1.7e-63 247.3 239 56.5
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 3.0e-63 246.5 145 77.9
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 1.9e-62 243.8 225 59.6
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 2.1e-61 240.4 338 44.7
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.4e-57 227.6 279 45.5
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 2.4e-57 226.9 252 46.8
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.5e-56 223.0 130 76.9
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.1e-49 201.4 120 76.7
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 6.0e-48 195.7 237 44.3
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.0e-47 194.9 242 42.1
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 2.4e-41 173.7 105 75.2
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 8.7e-31 138.7 114 64.0
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 1.3e-29 134.8 102 63.7
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.1e-25 121.7 90 67.8
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.9e-25 120.9 90 66.7
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.6e-24 117.9 74 73.0
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 3.7e-21 106.7 346 24.3
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.0e-18 98.6 54 72.2
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.4e-17 94.7 57 73.7
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 8.2e-13 79.0 102 32.4
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 1.0e-10 72.0 45 80.0
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 1.3e-10 71.6 133 34.6
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 7.2e-09 65.9 141 29.8
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 6.1e-08 62.8 77 66.2
Cre02.g099650 Chlamydomonas reinhardtii HOM05D004071 ORTHO05D004501 2.3e-07 60.8 165 25.5


User provided reference genes

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