Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21317 Brassica carinata HOM05D006090 ORTHO05D007600 5.8e-43 177.2 90 100.0
BNapus_Darmor_BZH_scaffold_109p00180 Brassica napus HOM05D006090 ORTHO05D007600 1.9e-38 162.2 90 93.3
Sp3g06170 Schrenkiella parvula HOM05D006090 ORTHO05D007600 5.2e-36 154.1 88 87.5
BraA08t32537Z Brassica rapa HOM05D006090 ORTHO05D007600 2.2e-34 148.7 88 80.7
BcaB04g17463 Brassica carinata HOM05D006090 ORTHO05D007600 6.4e-34 147.1 88 80.7
Aa31LG5G17800 Aethionema arabicum HOM05D006090 ORTHO05D007600 8.3e-34 146.7 87 82.8
AL1G54720 Arabidopsis lyrata HOM05D006090 ORTHO05D007600 1.1e-33 146.4 88 79.5
CARHR037780 Cardamine hirsuta HOM05D006090 ORTHO05D007600 1.1e-33 146.4 88 79.5
AT1G48140 Arabidopsis thaliana HOM05D006090 ORTHO05D007600 1.4e-33 146.0 88 78.4
BcaC07g37170 Brassica carinata HOM05D006090 ORTHO05D007600 1.4e-33 146.0 88 79.5
A08p05190 Brassica napus HOM05D006090 ORTHO05D007600 1.4e-33 146.0 88 79.5
C08p05430 Brassica napus HOM05D006090 ORTHO05D007600 1.4e-33 146.0 88 79.5
BolC8t47360H Brassica oleracea HOM05D006090 ORTHO05D007600 1.4e-33 146.0 88 79.5
Thhalv10011899m.g Eutrema salsugineum HOM05D006090 ORTHO05D007600 1.4e-33 146.0 88 79.5
Sp1g35110 Schrenkiella parvula HOM05D006090 ORTHO05D007600 4.1e-33 144.4 88 78.4
THA.LOC104802658 Tarenaya hassleriana HOM05D006090 ORTHO05D007600 5.4e-33 144.1 88 78.4
Aa31LG10G5590 Aethionema arabicum HOM05D006090 ORTHO05D007600 9.2e-33 143.3 95 74.7
Carub.0001s3724 Capsella rubella HOM05D006090 ORTHO05D007600 1.2e-32 142.9 88 75.0
BcaC08g43006 Brassica carinata HOM05D006090 ORTHO05D007600 1.6e-32 142.5 89 77.5
C06p02550 Brassica napus HOM05D006090 ORTHO05D007600 1.6e-32 142.5 89 77.5
MD05G1171700 Malus domestica HOM05D006090 ORTHO05D007600 2.7e-32 141.7 87 74.7
CSS0021939 Camellia sinensis var. sinensis HOM05D006090 ORTHO05D007600 1.3e-31 139.4 90 66.7
BolC6t35383H Brassica oleracea HOM05D006090 ORTHO05D007600 1.7e-31 139.0 89 77.5
Cc06_g17130 Coffea canephora HOM05D006090 ORTHO05D007600 2.3e-31 138.7 88 68.2
Gohir.D07G205600 Gossypium hirsutum HOM05D006090 ORTHO05D007600 2.3e-31 138.7 88 70.5
MD10G1159900 Malus domestica HOM05D006090 ORTHO05D007600 2.3e-31 138.7 86 74.4
Hma1.2p1_0052F.1_g030080 Hydrangea macrophylla HOM05D006090 ORTHO05D007600 3.0e-31 138.3 88 68.2
Prupe.8G199000 Prunus persica HOM05D006090 ORTHO05D007600 3.0e-31 138.3 87 70.1
TWI75G0179 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 3.0e-31 138.3 88 72.7
vmacro14732 Vaccinium macrocarpon HOM05D006090 ORTHO05D007600 3.0e-31 138.3 87 71.3
Gorai.001G231600 Gossypium raimondii HOM05D006090 ORTHO05D007600 3.9e-31 137.9 88 70.5
Nn8g41078 Nelumbo nucifera HOM05D006090 ORTHO05D007600 8.6e-31 136.7 88 69.3
Duzib211G0047 Durio zibethinus HOM05D006090 ORTHO05D007600 1.9e-30 135.6 87 72.4
Duzib211G0371 Durio zibethinus HOM05D006090 ORTHO05D007600 1.9e-30 135.6 87 72.4
FvH4_2g18550 Fragaria vesca HOM05D006090 ORTHO05D007600 1.9e-30 135.6 87 71.3
FAN15G1212 Fragaria x ananassa HOM05D006090 ORTHO05D007600 1.9e-30 135.6 87 71.3
Gohir.A07G199200 Gossypium hirsutum HOM05D006090 ORTHO05D007600 2.5e-30 135.2 88 69.3
MBI04_g03342_MAGBIO Magnolia biondii HOM05D006090 ORTHO05D007600 2.5e-30 135.2 88 69.3
Oeu051534.1 Olea europaea HOM05D006090 ORTHO05D007600 2.5e-30 135.2 88 65.9
Manes.06G087700 Manihot esculenta HOM05D006090 ORTHO05D007600 4.3e-30 134.4 88 70.5
Thecc.01G220300 Theobroma cacao HOM05D006090 ORTHO05D007600 4.3e-30 134.4 87 72.4
TWI18G0803 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 4.3e-30 134.4 88 70.5
Atru.chr6.1016 Acer truncatum HOM05D006090 ORTHO05D007600 5.6e-30 134.0 88 69.3
Dinv19173 Davidia involucrata HOM05D006090 ORTHO05D007600 5.6e-30 134.0 88 65.9
Medtr7g056250 Medicago truncatula HOM05D006090 ORTHO05D007600 5.6e-30 134.0 88 70.5
SalBow6G1264 Salvia bowleyana HOM05D006090 ORTHO05D007600 5.6e-30 134.0 88 64.8
SalBow6G7055 Salvia bowleyana HOM05D006090 ORTHO05D007600 5.6e-30 134.0 88 64.8
RcHm_v2.0_Chr6g0284111 Rosa chinensis HOM05D006090 ORTHO05D007600 7.3e-30 133.7 87 69.0
CANSAT21G0941 Cannabis sativa HOM05D006090 ORTHO05D007600 9.5e-30 133.3 87 69.0
HanXRQChr01g0015271 Helianthus annuus HOM05D006090 ORTHO05D007600 9.5e-30 133.3 88 65.9
ECA248G3406 Erigeron canadensis HOM05D006090 ORTHO05D007600 1.2e-29 132.9 88 65.9
Rhsim01G0252800 Rhododendron simsii HOM05D006090 ORTHO05D007600 1.6e-29 132.5 87 69.0
Hma1.2p1_0226F.1_g095400 Hydrangea macrophylla HOM05D006090 ORTHO05D007600 2.1e-29 132.1 86 67.4
TPR.G6479 Trifolium pratense HOM05D006090 ORTHO05D007600 2.1e-29 132.1 88 67.0
Psat3g148760 Pisum sativum HOM05D006090 ORTHO05D007600 2.8e-29 131.7 88 68.2
Potri.002G245800 Populus trichocarpa HOM05D006090 ORTHO05D007600 3.6e-29 131.3 86 69.8
Thecc.02G015400 Theobroma cacao HOM05D006090 ORTHO05D007600 3.6e-29 131.3 86 70.9
PGR044G2731 Punica granatum HOM05D006090 ORTHO05D007600 4.7e-29 131.0 88 67.0
Ca_06547_v3 Cicer arietinum L. HOM05D006090 ORTHO05D007600 6.2e-29 130.6 88 67.0
Lsat_1_v5_gn_5_180801 Lactuca sativa HOM05D006090 ORTHO05D007600 8.1e-29 130.2 84 67.9
PSO445G0009 Papaver somniferum HOM05D006090 ORTHO05D007600 1.1e-28 129.8 88 64.8
QL09p032732 Quercus lobata HOM05D006090 ORTHO05D007600 1.1e-28 129.8 86 69.8
EL10Ac7g17901 Beta vulgaris HOM05D006090 ORTHO05D007600 1.4e-28 129.4 88 68.2
BcaB07g33788 Brassica carinata HOM05D006090 ORTHO05D007600 1.4e-28 129.4 92 71.7
Migut.N03342 Erythranthe guttata HOM05D006090 ORTHO05D007600 1.8e-28 129.0 88 62.5
Lsat_1_v5_gn_8_5041 Lactuca sativa HOM05D006090 ORTHO05D007600 1.8e-28 129.0 87 64.4
Glyma.08G349000 Glycine max HOM05D006090 ORTHO05D007600 2.3e-28 128.6 88 65.9
Os02g0749450 Oryza sativa ssp. japonica HOM05D006090 ORTHO05D007600 2.3e-28 128.6 88 67.0
PSO170G6116 Papaver somniferum HOM05D006090 ORTHO05D007600 2.3e-28 128.6 88 63.6
Lj5g0019908 Lotus japonicus HOM05D006090 ORTHO05D007600 3.1e-28 128.3 88 65.9
Phvul.002G080700 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 3.1e-28 128.3 86 66.3
Solyc01g005110.3 Solanum lycopersicum HOM05D006090 ORTHO05D007600 3.1e-28 128.3 88 63.6
Sopen01g001130 Solanum pennellii HOM05D006090 ORTHO05D007600 3.1e-28 128.3 88 63.6
TWI36G1609 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 3.1e-28 128.3 88 67.0
Lalb_Chr03g0041481 Lupinus albus HOM05D006090 ORTHO05D007600 5.2e-28 127.5 88 65.9
BraA01t04392Z Brassica rapa HOM05D006090 ORTHO05D007600 8.9e-28 126.7 80 83.8
Lj1g0010865 Lotus japonicus HOM05D006090 ORTHO05D007600 8.9e-28 126.7 88 63.6
TAR362G1026 Trochodendron aralioides HOM05D006090 ORTHO05D007600 8.9e-28 126.7 88 61.4
QL02p097583 Quercus lobata HOM05D006090 ORTHO05D007600 1.5e-27 125.9 86 67.4
FAN24G0022 Fragaria x ananassa HOM05D006090 ORTHO05D007600 2.0e-27 125.6 100 61.0
CAN.G282.104 Capsicum annuum HOM05D006090 ORTHO05D007600 2.6e-27 125.2 88 62.5
CiPaw.01G050400 Carya illinoinensis HOM05D006090 ORTHO05D007600 2.6e-27 125.2 87 66.7
ClCG10G009020 Citrullus lanatus HOM05D006090 ORTHO05D007600 3.4e-27 124.8 88 65.9
Phvul.002G081100 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 3.4e-27 124.8 84 67.9
GSVIVG01028416001 Vitis vinifera HOM05D006090 ORTHO05D007600 4.4e-27 124.4 88 63.6
CAN.G151.21 Capsicum annuum HOM05D006090 ORTHO05D007600 5.8e-27 124.0 88 63.6
Peaxi162Scf01111g00025 Petunia axillaris HOM05D006090 ORTHO05D007600 5.8e-27 124.0 88 63.6
Zm00001eb059180 Zea mays HOM05D006090 ORTHO05D007600 9.9e-27 123.2 88 62.5
Sed0025432 Sechium edule HOM05D006090 ORTHO05D007600 1.7e-26 122.5 88 62.5
Nitab4.5_0014260g0010 Nicotiana tabacum HOM05D006090 ORTHO05D007600 2.2e-26 122.1 88 61.4
Nitab4.5_0000521g0090 Nicotiana tabacum HOM05D006090 ORTHO05D007600 4.9e-26 120.9 88 60.2
Eucgr.A02241 Eucalyptus grandis HOM05D006090 ORTHO05D007600 8.3e-26 120.2 88 60.2
Sed0016973 Sechium edule HOM05D006090 ORTHO05D007600 8.3e-26 120.2 84 66.7
Cpa.g.sc71.6 Carica papaya HOM05D006090 ORTHO05D007600 2.4e-25 118.6 84 69.0
PGR004G1711 Punica granatum HOM05D006090 ORTHO05D007600 2.4e-25 118.6 88 60.2
unitig_8.g4837 Utricularia gibba HOM05D006090 ORTHO05D007600 4.1e-25 117.9 86 65.1
CDE09G0476 Ceratophyllum demersum HOM05D006090 ORTHO05D007600 7.1e-25 117.1 88 55.7
arahy.Tifrunner.gnm1.ann1.7I8V6Q Arachis hypogaea HOM05D006090 ORTHO05D007600 3.5e-24 114.8 90 63.3
arahy.Tifrunner.gnm1.ann1.NKLH1V Arachis hypogaea HOM05D006090 ORTHO05D007600 4.6e-24 114.4 90 62.2
Medtr3g437420 Medicago truncatula HOM05D006090 ORTHO05D007600 1.3e-23 112.8 68 77.9
Ciclev10023078m.g Citrus clementina HOM05D006090 ORTHO05D007600 1.7e-23 112.5 76 67.1
PGSC0003DMG400022770 Solanum tuberosum HOM05D006090 ORTHO05D007600 5.1e-23 110.9 121 47.1
HPP92_023706 Vanilla planifolia HOM05D006090 ORTHO05D007600 5.1e-23 110.9 87 58.6
Duzib138G1257 Durio zibethinus HOM05D006090 ORTHO05D007600 1.1e-22 109.8 67 76.1
Cpa.g.sc428.3 Carica papaya HOM05D006090 ORTHO05D007600 5.6e-22 107.5 68 72.1
Haze_03967 Corylus avellana HOM05D006090 ORTHO05D007600 2.1e-21 105.5 95 51.6
Phvul.009G016400 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 4.7e-21 104.4 66 71.2
Actinidia30052 Actinidia chinensis HOM05D006090 ORTHO05D007600 8.1e-21 103.6 66 69.7
MELO3C026729.2 Cucumis melo HOM05D006090 ORTHO05D007600 8.1e-21 103.6 68 70.6
Rhsim13G0047700 Rhododendron simsii HOM05D006090 ORTHO05D007600 1.1e-20 103.2 82 63.4
Lj2C1126T3 Lonicera japonica HOM05D006090 ORTHO05D007600 2.0e-19 99.0 61 75.4
Eucgr.K03282 Eucalyptus grandis HOM05D006090 ORTHO05D007600 4.9e-18 94.4 55 76.4
Sabra02G0187100 Salix brachista HOM05D006090 ORTHO05D007600 4.2e-17 91.3 54 70.4
Glyma.18G167500 Glycine max HOM05D006090 ORTHO05D007600 5.4e-17 90.9 56 71.4
CDE02G0014 Ceratophyllum demersum HOM05D006090 ORTHO05D007600 1.6e-16 89.4 68 55.9
Mapoly0057s0028 Marchantia polymorpha HOM05D006090 ORTHO05D007600 4.6e-16 87.8 89 51.7
CiPaw.02G023500 Carya illinoinensis HOM05D006090 ORTHO05D007600 6.6e-15 84.0 80 56.2
Haze_15253 Corylus avellana HOM05D006090 ORTHO05D007600 1.5e-14 82.8 75 54.7
TAR633G0277 Trochodendron aralioides HOM05D006090 ORTHO05D007600 3.6e-13 78.2 48 68.8
AagrBONN_evm.TU.Sc2ySwM_228.829 Anthoceros agrestis HOM05D006090 ORTHO05D007600 4.7e-13 77.8 89 49.4
Pp3c20_9690 Physcomitrium patens HOM05D006090 ORTHO05D007600 9.0e-12 73.6 89 46.1
arahy.Tifrunner.gnm1.ann1.L6G805 Arachis hypogaea HOM05D006090 ORTHO05D007600 1.6e-08 62.8 53 54.7
Aa31LG11G3540 Aethionema arabicum HOM05D006090 ORTHO05D007600 2.1e-08 62.4 31 87.1
Nitab4.5_0001873g0080 Nicotiana tabacum HOM05D006090 ORTHO05D007600 3.0e-07 58.5 45 51.1
AL3G18490 Arabidopsis lyrata HOM05D006090 ORTHO05D007600 5.6e-06 54.3 34 64.7
Carub.0003s0674 Capsella rubella HOM05D006090 ORTHO05D007600 9.6e-06 53.5 35 77.1


User provided reference genes

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