Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21310 Brassica carinata HOM05D004974 ORTHO05D001537 4.0e-57 224.6 115 100.0
BcaC05g29757 Brassica carinata HOM05D004974 ORTHO05D001537 2.9e-31 138.7 90 83.3
Carub.0003s0659 Capsella rubella HOM05D004974 ORTHO05D001537 2.7e-29 132.1 86 82.6
AL3G18310 Arabidopsis lyrata HOM05D004974 ORTHO05D001537 1.0e-28 130.2 86 81.4
AT3G07080 Arabidopsis thaliana HOM05D004974 ORTHO05D001537 1.0e-28 130.2 86 81.4
A03p35060 Brassica napus HOM05D004974 ORTHO05D001537 2.3e-28 129.0 86 79.1
BraA03t12686Z Brassica rapa HOM05D004974 ORTHO05D001537 2.3e-28 129.0 86 79.1
C05p60300 Brassica napus HOM05D004974 ORTHO05D001537 5.1e-28 127.9 87 79.3
C07p01960 Brassica napus HOM05D004974 ORTHO05D001537 5.1e-28 127.9 86 81.4
Thhalv10020757m.g Eutrema salsugineum HOM05D004974 ORTHO05D001537 5.1e-28 127.9 86 80.2
C03p42640 Brassica napus HOM05D004974 ORTHO05D001537 8.7e-28 127.1 86 79.1
CARHR081670 Cardamine hirsuta HOM05D004974 ORTHO05D001537 1.1e-27 126.7 86 80.2
BolC3t16534H Brassica oleracea HOM05D004974 ORTHO05D001537 1.9e-27 125.9 83 80.7
C07p12710 Brassica napus HOM05D004974 ORTHO05D001537 2.5e-27 125.6 86 81.4
BolC7t41758H Brassica oleracea HOM05D004974 ORTHO05D001537 2.5e-27 125.6 86 80.2
BcaC05g29837 Brassica carinata HOM05D004974 ORTHO05D001537 4.3e-27 124.8 84 81.0
Sp3g06020 Schrenkiella parvula HOM05D004974 ORTHO05D001537 9.6e-27 123.6 81 82.7
Aa31LG5G17640 Aethionema arabicum HOM05D004974 ORTHO05D001537 1.5e-24 116.3 77 83.1
BcaC06g36634 Brassica carinata HOM05D004974 ORTHO05D001537 6.5e-23 110.9 86 75.6
BolC7t40605H Brassica oleracea HOM05D004974 ORTHO05D001537 6.5e-23 110.9 86 75.6
BraA01t04399Z Brassica rapa HOM05D004974 ORTHO05D001537 1.4e-22 109.8 80 78.8
BcaC09g47938 Brassica carinata HOM05D004974 ORTHO05D001537 3.2e-22 108.6 80 77.5
BolC1t05570H Brassica oleracea HOM05D004974 ORTHO05D001537 3.2e-22 108.6 80 77.5
Dinv19208 Davidia involucrata HOM05D004974 ORTHO05D000168 1.2e-21 106.7 69 79.7
THA.LOC104802676 Tarenaya hassleriana HOM05D004974 ORTHO05D001537 1.6e-21 106.3 83 69.9
Actinidia30081 Actinidia chinensis HOM05D004974 ORTHO05D001537 2.1e-21 105.9 68 79.4
Rhsim13G0044600 Rhododendron simsii HOM05D004974 ORTHO05D001537 2.7e-21 105.5 73 78.1
Actinidia09484 Actinidia chinensis HOM05D000836 ORTHO05D000709 4.6e-21 104.8 69 76.8
Rhsim01G0256000 Rhododendron simsii HOM05D004974 ORTHO05D001537 4.6e-21 104.8 73 75.3
BolC5t34678H Brassica oleracea HOM05D004974 ORTHO05D001537 6.1e-21 104.4 62 90.3
Lj2C1132G7 Lonicera japonica HOM05D004974 ORTHO05D000168 6.1e-21 104.4 109 56.9
Eucgr.K02174 Eucalyptus grandis HOM05D004974 ORTHO05D001537 1.8e-20 102.8 70 72.9
Eucgr.K02179 Eucalyptus grandis HOM05D004974 ORTHO05D001537 1.8e-20 102.8 70 72.9
CSS0031489 Camellia sinensis var. sinensis HOM05D004974 ORTHO05D001537 2.3e-20 102.4 68 77.9
TWI18G1322 Tripterygium wilfordii HOM05D004974 ORTHO05D001537 2.3e-20 102.4 69 75.4
vmacro02753 Vaccinium macrocarpon HOM05D004974 ORTHO05D001537 2.3e-20 102.4 70 74.3
QL09p054672 Quercus lobata HOM05D004974 ORTHO05D001537 3.0e-20 102.1 87 63.2
CSS0012166 Camellia sinensis var. sinensis HOM05D004974 ORTHO05D001537 3.9e-20 101.7 67 79.1
Lj1A85T20 Lonicera japonica HOM05D004974 ORTHO05D001537 3.9e-20 101.7 69 75.4
Hund18374 Selenicereus undatus HOM05D004974 ORTHO05D001537 5.1e-20 101.3 70 71.4
Cpa.g.sc8.163 Carica papaya HOM05D004974 ORTHO05D001537 6.7e-20 100.9 84 66.7
Atru.chr5.2001 Acer truncatum HOM05D004974 ORTHO05D001537 8.7e-20 100.5 67 76.1
Actinidia23725 Actinidia chinensis HOM05D004974 ORTHO05D001537 8.7e-20 100.5 69 72.5
COL.COLO4_08178 Corchorus olitorius HOM05D004974 ORTHO05D001537 1.1e-19 100.1 69 73.9
Oeu022257.1 Olea europaea HOM05D004974 ORTHO05D001537 1.1e-19 100.1 69 75.4
Thecc.01G226800 Theobroma cacao HOM05D004974 ORTHO05D001537 1.1e-19 100.1 69 71.0
THA.LOC104818948 Tarenaya hassleriana HOM05D004974 ORTHO05D001537 1.5e-19 99.8 86 64.0
Gohir.A11G137200 Gossypium hirsutum HOM05D004974 ORTHO05D001537 1.9e-19 99.4 69 72.5
Manes.13G045300 Manihot esculenta HOM05D004974 ORTHO05D001537 1.9e-19 99.4 70 72.9
PGR044G1568 Punica granatum HOM05D004974 ORTHO05D001537 2.5e-19 99.0 68 73.5
Hund05533 Selenicereus undatus HOM05D004974 ORTHO05D001537 2.5e-19 99.0 64 75.0
Hund05537 Selenicereus undatus HOM05D004974 ORTHO05D001537 2.5e-19 99.0 64 75.0
Sc17g0002410 Simmondsia chinensis HOM05D004974 ORTHO05D001537 2.5e-19 99.0 70 68.6
GSVIVG01028650001 Vitis vinifera HOM05D004974 ORTHO05D001537 3.3e-19 98.6 69 72.5
AUR62031806 Chenopodium quinoa HOM05D004974 ORTHO05D001537 4.3e-19 98.2 69 72.5
CsaV3_3G029890 Cucumis sativus L. HOM05D004974 ORTHO05D001537 4.3e-19 98.2 70 70.0
ECA232G3165 Erigeron canadensis HOM05D004974 ORTHO05D001537 4.3e-19 98.2 69 73.9
Migut.D00531 Erythranthe guttata HOM05D004974 ORTHO05D001537 4.3e-19 98.2 70 70.0
MD10G1165300 Malus domestica HOM05D004974 ORTHO05D001537 4.3e-19 98.2 69 71.0
Prupe.8G203700 Prunus persica HOM05D004974 ORTHO05D001537 4.3e-19 98.2 69 71.0
Duzib133G1519 Durio zibethinus HOM05D004974 ORTHO05D001537 5.7e-19 97.8 69 71.0
AUR62008904 Chenopodium quinoa HOM05D004974 ORTHO05D001537 7.4e-19 97.4 68 73.5
Cc01_g17120 Coffea canephora HOM05D004974 ORTHO05D001537 7.4e-19 97.4 78 67.9
Gorai.007G153800 Gossypium raimondii HOM05D004974 ORTHO05D001537 7.4e-19 97.4 69 71.0
Psat3g144880 Pisum sativum HOM05D004974 ORTHO05D001537 7.4e-19 97.4 70 68.6
Sed0026000 Sechium edule HOM05D004974 ORTHO05D001537 7.4e-19 97.4 68 70.6
Lalb_Chr01g0022381 Lupinus albus HOM05D004974 ORTHO05D001537 9.7e-19 97.1 70 68.6
Peaxi162Scf00107g00164 Petunia axillaris HOM05D004974 ORTHO05D001537 9.7e-19 97.1 70 71.4
VMungo1383G2852 Vigna mungo HOM05D004974 ORTHO05D001537 9.7e-19 97.1 70 68.6
Lj5g0019880 Lotus japonicus HOM05D004974 ORTHO05D001537 1.3e-18 96.7 69 69.6
EL10Ac3g05326 Beta vulgaris HOM05D004974 ORTHO05D001537 1.6e-18 96.3 68 72.1
Ciclev10020126m.g Citrus clementina HOM05D004974 ORTHO05D001537 1.6e-18 96.3 70 68.6
MELO3C026996.2 Cucumis melo HOM05D004974 ORTHO05D001537 1.6e-18 96.3 68 72.1
Os06g0681700 Oryza sativa ssp. japonica HOM05D004974 ORTHO05D001537 1.6e-18 96.3 84 60.7
Phvul.008G125000 Phaseolus vulgaris HOM05D004974 ORTHO05D001537 1.6e-18 96.3 70 68.6
Gohir.D11G143600 Gossypium hirsutum HOM05D004974 ORTHO05D001537 2.2e-18 95.9 69 69.6
Solyc09g061320.4 Solanum lycopersicum HOM05D004974 ORTHO05D001537 2.2e-18 95.9 70 71.4
Sopen09g024080 Solanum pennellii HOM05D004974 ORTHO05D001537 2.2e-18 95.9 70 71.4
HanXRQChr16g0532351 Helianthus annuus HOM05D004974 ORTHO05D001537 2.8e-18 95.5 70 70.0
Sed0019567 Sechium edule HOM05D004974 ORTHO05D001537 2.8e-18 95.5 83 62.7
Zm00001eb273630 Zea mays HOM05D004974 ORTHO05D001537 3.7e-18 95.1 86 58.1
ClCG07G001900 Citrullus lanatus HOM05D004974 ORTHO05D001537 4.8e-18 94.7 82 62.2
Lj1g0028171 Lotus japonicus HOM05D004974 ORTHO05D001537 4.8e-18 94.7 70 68.6
PSO017G1462 Papaver somniferum HOM05D004974 ORTHO05D001537 4.8e-18 94.7 61 78.7
PSO063G7040 Papaver somniferum HOM05D004974 ORTHO05D001537 4.8e-18 94.7 61 78.7
TPR.G9031 Trifolium pratense HOM05D004974 ORTHO05D001537 4.8e-18 94.7 69 68.1
TAR365G0028 Trochodendron aralioides HOM05D004974 ORTHO05D001537 4.8e-18 94.7 67 73.1
Haze_24788 Corylus avellana HOM05D004974 ORTHO05D001537 6.3e-18 94.4 70 68.6
Glyma.08G354800 Glycine max HOM05D004974 ORTHO05D001537 6.3e-18 94.4 69 68.1
MD05G1176600 Malus domestica HOM05D004974 ORTHO05D001537 6.3e-18 94.4 67 70.1
PGSC0003DMG400017652 Solanum tuberosum HOM05D004974 ORTHO05D001537 6.3e-18 94.4 70 70.0
Aqoxy2G03888 Aquilegia oxysepala HOM05D004974 ORTHO05D001537 1.1e-17 93.6 73 65.8
Ca_07523_v3 Cicer arietinum L. HOM05D004974 ORTHO05D001537 1.1e-17 93.6 69 68.1
Lalb_Chr03g0041801 Lupinus albus HOM05D004974 ORTHO05D001537 1.1e-17 93.6 69 66.7
Medtr7g058520 Medicago truncatula HOM05D004974 ORTHO05D001537 1.1e-17 93.6 69 66.7
FAN15G2952 Fragaria x ananassa HOM05D004974 ORTHO05D001537 1.4e-17 93.2 67 70.1
Nn4g24998 Nelumbo nucifera HOM05D004974 ORTHO05D001537 1.4e-17 93.2 68 69.1
Nitab4.5_0000045g0090 Nicotiana tabacum HOM05D004974 ORTHO05D001537 1.4e-17 93.2 70 68.6
Oeu004060.1 Olea europaea HOM05D004974 ORTHO05D001537 1.4e-17 93.2 61 77.0
Sabra14G0144900 Salix brachista HOM05D004974 ORTHO05D001537 1.4e-17 93.2 67 73.1
CAN.G900.32 Capsicum annuum HOM05D004974 ORTHO05D001537 1.8e-17 92.8 70 68.6
CDE02G3969 Ceratophyllum demersum HOM05D004974 ORTHO05D001537 1.8e-17 92.8 68 66.2
Eucgr.G01752 Eucalyptus grandis HOM05D004974 ORTHO05D001537 1.8e-17 92.8 70 65.7
FvH4_2g19180 Fragaria vesca HOM05D004974 ORTHO05D001537 1.8e-17 92.8 67 70.1
FAN24G0854 Fragaria x ananassa HOM05D004974 ORTHO05D001537 1.8e-17 92.8 67 70.1
Nitab4.5_0006192g0010 Nicotiana tabacum HOM05D004974 ORTHO05D001537 1.8e-17 92.8 70 68.6
Zm00001eb225240 Zea mays HOM05D004974 ORTHO05D001537 1.8e-17 92.8 85 56.5
SGA_v2.0_scaffold1G00729 Striga asiatica HOM05D004974 ORTHO05D001537 2.4e-17 92.4 69 66.7
EL10Ac7g17825 Beta vulgaris HOM05D004974 ORTHO05D001537 3.1e-17 92.0 66 71.2
arahy.Tifrunner.gnm1.ann1.7S1X7X Arachis hypogaea HOM05D004974 ORTHO05D001537 4.1e-17 91.7 69 68.1
arahy.Tifrunner.gnm1.ann1.GEM3QE Arachis hypogaea HOM05D004974 ORTHO05D001537 4.1e-17 91.7 69 68.1
CDE08G1692 Ceratophyllum demersum HOM05D004974 ORTHO05D001537 4.1e-17 91.7 68 64.7
Potri.014G189500 Populus trichocarpa HOM05D004974 ORTHO05D001537 4.1e-17 91.7 67 71.6
TWI36G0218 Tripterygium wilfordii HOM05D004974 ORTHO05D001537 4.1e-17 91.7 69 68.1
MSTRG.21423 Avicennia marina HOM05D004974 ORTHO05D001537 9.0e-17 90.5 69 68.1
Nn1g07839 Nelumbo nucifera HOM05D004974 ORTHO05D001537 1.2e-16 90.1 82 58.5
RcHm_v2.0_Chr6g0284971 Rosa chinensis HOM05D004974 ORTHO05D001537 1.2e-16 90.1 67 67.2
SalBow1G3148 Salvia bowleyana HOM05D004974 ORTHO05D001537 1.5e-16 89.7 69 63.8
ATR0736G069 Amborella trichopoda HOM05D004974 ORTHO05D001537 3.4e-16 88.6 73 64.4
MSTRG.18386 Avicennia marina HOM05D004974 ORTHO05D001537 7.7e-16 87.4 69 65.2
unitig_749.g13727 Utricularia gibba HOM05D004974 ORTHO05D001537 1.0e-15 87.0 73 60.3
HPP92_000858 Vanilla planifolia HOM05D004974 ORTHO05D001537 5.0e-15 84.7 65 64.6
VMungo0720G1354 Vigna mungo HOM05D004974 ORTHO05D001537 5.0e-15 84.7 101 50.5
CAN.G154.2 Capsicum annuum HOM05D004974 ORTHO05D001537 8.5e-15 84.0 61 70.5
SEGI_31222 Sequoiadendron giganteum HOM05D004974 ORTHO05D001537 1.2e-13 80.1 88 53.4
MBI10_g06044_MAGBIO Magnolia biondii HOM05D004974 ORTHO05D001537 1.6e-13 79.7 68 57.4
SMO167G0060 Selaginella moellendorffii HOM05D004974 ORTHO05D001537 4.6e-13 78.2 73 56.2
SMO347G0321 Selaginella moellendorffii HOM05D004974 ORTHO05D001537 4.6e-13 78.2 73 56.2
Pp3c2_11660 Physcomitrium patens HOM05D004974 ORTHO05D001537 1.4e-12 76.6 71 59.2
PSO407G0193 Papaver somniferum HOM05D004974 ORTHO05D001537 1.8e-12 76.3 71 60.6
PSO170G3054 Papaver somniferum HOM05D004974 ORTHO05D001537 3.0e-12 75.5 71 59.2
MBI16_g31263_MAGBIO Magnolia biondii HOM05D004974 ORTHO05D001537 5.1e-12 74.7 71 52.1
HPP92_026551 Vanilla planifolia HOM05D004974 ORTHO05D001537 6.7e-12 74.3 83 50.6
VMungo0540G2436 Vigna mungo HOM05D004974 ORTHO05D001537 8.8e-12 73.9 87 50.6
HPP92_002198 Vanilla planifolia HOM05D004974 ORTHO05D001537 2.5e-11 72.4 83 49.4
Mapoly0028s0131 Marchantia polymorpha HOM05D004974 ORTHO05D001537 2.8e-10 68.9 57 63.2
MD04G1105300 Malus domestica HOM05D004974 ORTHO05D001537 1.7e-07 59.7 38 81.6
MBI10_g47169_MAGBIO Magnolia biondii HOM05D004974 ORTHO05D001537 3.2e-06 55.5 59 49.2
vmacro14757 Vaccinium macrocarpon HOM05D006066 ORTHO05D007720 5.5e-06 54.7 39 69.2


User provided reference genes

Program Settings