Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21300 Brassica carinata HOM05D003304 ORTHO05D003762 2.6e-40 168.3 86 100.0
BcaC09g47926 Brassica carinata HOM05D003304 ORTHO05D003762 2.0e-32 142.1 86 89.5
BolC1t05580H Brassica oleracea HOM05D003304 ORTHO05D003762 2.0e-32 142.1 86 89.5
BraA01t04408Z Brassica rapa HOM05D003304 ORTHO05D003762 6.3e-31 137.1 86 88.4
BNapus_Darmor_BZH_scaffold_117p00150 Brassica napus HOM05D003304 ORTHO05D003762 3.1e-30 134.8 86 86.0
Carub.0003s0640 Capsella rubella HOM05D003304 ORTHO05D003762 1.0e-25 119.8 93 74.2
AL3G18000 Arabidopsis lyrata HOM05D003304 ORTHO05D003762 7.5e-24 113.6 93 69.9
AT3G06868 Arabidopsis thaliana HOM05D003304 ORTHO05D003762 2.4e-22 108.6 92 68.5
CARHR081490 Cardamine hirsuta HOM05D003304 ORTHO05D003762 2.4e-22 108.6 87 73.6
Thhalv10021990m.g Eutrema salsugineum HOM05D003304 ORTHO05D003762 8.5e-20 100.1 95 64.2
Sp3g05830 Schrenkiella parvula HOM05D003304 ORTHO05D003762 1.8e-17 92.4 86 66.3
C03p42510 Brassica napus HOM05D003304 ORTHO05D003762 3.0e-17 91.7 90 65.6
BolC3t16521H Brassica oleracea HOM05D003304 ORTHO05D003762 3.0e-17 91.7 90 65.6
BcaC05g30564 Brassica carinata HOM05D003304 ORTHO05D003762 4.0e-17 91.3 87 67.8
BraA03t12673Z Brassica rapa HOM05D003304 ORTHO05D003762 3.4e-16 88.2 87 64.4
C05p60480 Brassica napus HOM05D003304 ORTHO05D003762 4.4e-16 87.8 89 64.0
BolC5t34702H Brassica oleracea HOM05D003304 ORTHO05D003762 9.8e-16 86.7 89 62.9
A03p34930 Brassica napus HOM05D003304 ORTHO05D003762 3.7e-15 84.7 87 63.2
Aa31LG5G17450 Aethionema arabicum HOM05D003304 ORTHO05D003762 1.6e-13 79.3 95 55.8
BraA05t22849Z Brassica rapa HOM05D003304 ORTHO05D003762 2.7e-13 78.6 89 58.4
A05p41260 Brassica napus HOM05D003304 ORTHO05D003762 3.5e-13 78.2 90 57.8
BcaC03g17699 Brassica carinata HOM05D003304 ORTHO05D003762 1.3e-12 76.3 101 50.5
BcaC03g17695 Brassica carinata HOM05D003304 ORTHO05D003762 1.7e-12 75.9 99 50.5
C02p57040 Brassica napus HOM05D003304 ORTHO05D003762 1.7e-12 75.9 99 50.5
BolC2t11774H Brassica oleracea HOM05D003304 ORTHO05D003762 1.7e-12 75.9 99 50.5
BraA02t08771Z Brassica rapa HOM05D003304 ORTHO05D003762 1.7e-12 75.9 99 50.5
A02p37880 Brassica napus HOM05D003304 ORTHO05D003762 1.5e-11 72.8 99 49.5
A06p38580 Brassica napus HOM05D003304 ORTHO05D003762 1.9e-11 72.4 100 50.0
Thhalv10004314m.g Eutrema salsugineum HOM05D003304 ORTHO05D003762 2.5e-11 72.0 103 48.5
BraA06t26773Z Brassica rapa HOM05D003304 ORTHO05D003762 7.2e-11 70.5 100 48.0
CARHR182640 Cardamine hirsuta HOM05D003304 ORTHO05D003762 7.2e-11 70.5 106 46.2
BcaB07g34216 Brassica carinata HOM05D003304 ORTHO05D003762 1.2e-10 69.7 99 47.5
VMungo1309G2051 Vigna mungo HOM05D003304 ORTHO05D003762 1.6e-10 69.3 90 47.8
Sp2g19450 Schrenkiella parvula HOM05D003304 ORTHO05D003762 2.1e-10 68.9 87 51.7
Psat1g155200 Pisum sativum HOM05D003304 ORTHO05D003762 1.0e-09 66.6 86 46.5
Ca_01922_v3 Cicer arietinum L. HOM05D003304 ORTHO05D003762 1.4e-09 66.2 92 47.8
Phvul.009G249600 Phaseolus vulgaris HOM05D003304 ORTHO05D003762 5.2e-09 64.3 87 49.4
Glyma.15G149700 Glycine max HOM05D003304 ORTHO05D003762 1.2e-08 63.2 94 46.8
MD13G1166900 Malus domestica HOM05D003304 ORTHO05D003762 1.2e-08 63.2 97 45.4
QL06p009983 Quercus lobata HOM05D003304 ORTHO05D003762 1.5e-08 62.8 110 41.8
QL93p2007_0071 Quercus lobata HOM05D003304 ORTHO05D003762 1.5e-08 62.8 110 41.8
Aa31sc105G60 Aethionema arabicum HOM05D003304 ORTHO05D003762 2.0e-08 62.4 99 48.5
MD16G1166700 Malus domestica HOM05D003304 ORTHO05D003762 2.0e-08 62.4 95 46.3
Medtr2g436340 Medicago truncatula HOM05D003304 ORTHO05D003762 2.0e-08 62.4 89 48.3
THA.LOC104803101 Tarenaya hassleriana HOM05D003304 ORTHO05D003762 4.4e-08 61.2 117 41.9
AT5G49100 Arabidopsis thaliana HOM05D003304 ORTHO05D003762 7.5e-08 60.5 104 43.3
Manes.15G011400 Manihot esculenta HOM05D003304 ORTHO05D003762 7.5e-08 60.5 108 45.4
C07p39670 Brassica napus HOM05D003304 ORTHO05D003762 9.8e-08 60.1 100 44.0
Oeu016250.1 Olea europaea HOM05D003304 ORTHO05D003762 1.3e-07 59.7 90 43.3
Oeu053986.1 Olea europaea HOM05D003304 ORTHO05D003762 1.3e-07 59.7 106 41.5
Oeu016249.1 Olea europaea HOM05D003304 ORTHO05D003762 1.7e-07 59.3 89 43.8
Haze_01180 Corylus avellana HOM05D003304 ORTHO05D003762 2.8e-07 58.5 99 45.5
Duzib212G1014 Durio zibethinus HOM05D003304 ORTHO05D003762 2.8e-07 58.5 106 43.4
BolC7t44491H Brassica oleracea HOM05D003304 ORTHO05D003762 3.7e-07 58.2 57 61.4
Thecc.04G287300 Theobroma cacao HOM05D003304 ORTHO05D003762 3.7e-07 58.2 105 42.9
AL8G22610 Arabidopsis lyrata HOM05D003304 ORTHO05D003762 8.3e-07 57.0 102 42.2
Peaxi162Scf00246g00127 Petunia axillaris HOM05D003304 ORTHO05D003762 8.3e-07 57.0 108 36.1
Sed0009993 Sechium edule HOM05D003304 ORTHO05D003762 1.1e-06 56.6 99 39.4
Lj4g0014231 Lotus japonicus HOM05D003304 ORTHO05D003762 1.4e-06 56.2 109 36.7
Peaxi162Scf00646g00329 Petunia axillaris HOM05D003304 ORTHO05D003762 1.4e-06 56.2 83 42.2
THA.LOC104827338 Tarenaya hassleriana HOM05D003304 ORTHO05D003762 1.4e-06 56.2 119 39.5
MELO3C006676.2 Cucumis melo HOM05D003304 ORTHO05D003762 1.8e-06 55.8 103 36.9
CsaV3_3G014790 Cucumis sativus L. HOM05D003304 ORTHO05D003762 1.8e-06 55.8 100 39.0
RcHm_v2.0_Chr4g0422951 Rosa chinensis HOM05D003304 ORTHO05D003762 2.4e-06 55.5 108 38.0
Carub.0008s0891 Capsella rubella HOM05D003304 ORTHO05D003762 3.1e-06 55.1 104 41.3
FvH4_4g18460 Fragaria vesca HOM05D003304 ORTHO05D003762 3.1e-06 55.1 108 38.9
FAN12G0090 Fragaria x ananassa HOM05D003304 ORTHO05D003762 3.1e-06 55.1 108 38.9
Lalb_Chr18g0051571 Lupinus albus HOM05D003304 ORTHO05D003762 4.1e-06 54.7 107 37.4
Nitab4.5_0000513g0170 Nicotiana tabacum HOM05D003304 ORTHO05D003762 4.1e-06 54.7 106 34.0
arahy.Tifrunner.gnm1.ann1.8XU14N Arachis hypogaea HOM05D003304 ORTHO05D003762 5.4e-06 54.3 85 44.7
COL.COLO4_13834 Corchorus olitorius HOM05D003304 ORTHO05D003762 7.0e-06 53.9 114 40.4
SGA_v2.0_scaffold9G04881 Striga asiatica HOM05D003304 ORTHO05D003762 7.0e-06 53.9 92 41.3
TAR622G1126 Trochodendron aralioides HOM05D003304 ORTHO05D003762 7.0e-06 53.9 109 40.4
VMungo1215G1188 Vigna mungo HOM05D003304 ORTHO05D003762 7.0e-06 53.9 109 36.7
arahy.Tifrunner.gnm1.ann1.IWFQ27 Arachis hypogaea HOM05D003304 ORTHO05D003762 9.2e-06 53.5 89 42.7


User provided reference genes

Program Settings