Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 4.6e-206 721.5 507 100.0
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 4.0e-125 452.6 548 57.8
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 6.2e-118 428.7 517 54.9
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.4e-98 364.4 524 57.8
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.8e-88 330.9 535 52.9
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.3e-72 277.3 341 58.1
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 1.8e-69 267.7 249 62.7
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 1.8e-64 251.1 241 60.6
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 6.7e-64 249.2 242 62.0
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 7.4e-63 245.7 237 63.7
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 1.3e-62 245.0 238 63.4
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 6.5e-59 232.6 541 42.9
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 9.4e-58 228.8 515 42.3
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 7.9e-57 225.7 523 38.8
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 1.8e-56 224.6 520 36.5
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.6e-52 211.5 513 36.5
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 3.8e-27 127.1 199 40.2
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.1e-26 125.6 199 39.2
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 5.6e-26 123.2 202 41.6
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 7.3e-26 122.9 248 37.5
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 9.5e-26 122.5 199 38.7
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 3.6e-25 120.6 206 38.3
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 6.1e-25 119.8 242 39.7
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 6.8e-24 116.3 210 36.7
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 8.9e-24 115.9 202 37.1
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.5e-23 115.2 199 36.7
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 5.7e-23 113.2 201 36.3
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 7.5e-23 112.8 201 35.8
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 1.3e-22 112.1 201 35.8
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 2.2e-22 111.3 201 36.3
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 2.2e-22 111.3 201 36.3
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 4.9e-22 110.2 202 38.1
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 4.6e-20 103.6 202 35.6
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 5.9e-20 103.2 217 37.8
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 1.7e-19 101.7 146 40.4
Sp7g09570 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.9e-18 98.2 115 55.7
SpUn0565_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.5e-18 97.8 142 53.5
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 7.3e-18 96.3 206 32.0
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 3.6e-17 94.0 110 40.9
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 3.6e-17 94.0 249 35.3
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 1.8e-16 91.7 115 40.0
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.8e-16 91.7 211 33.6
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.5e-15 88.6 139 35.3
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 2.0e-15 88.2 115 42.6
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 9.8e-15 85.9 110 38.2
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.3e-14 85.5 139 36.0
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 8.3e-14 82.8 160 33.8
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 1.1e-13 82.4 102 46.1
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.4e-13 82.0 190 34.7
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 1.9e-13 81.6 139 32.4
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 2.4e-13 81.3 195 33.8
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 2.4e-13 81.3 150 36.0
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.2e-13 80.9 120 40.8
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 5.4e-13 80.1 124 37.1
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 5.4e-13 80.1 101 43.6
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 5.4e-13 80.1 156 38.5
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 7.0e-13 79.7 210 32.4
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 2.0e-12 78.2 100 42.0
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.0e-12 78.2 98 41.8
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 2.0e-12 78.2 104 40.4
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 2.7e-12 77.8 148 31.1
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 2.7e-12 77.8 117 40.2
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 4.6e-12 77.0 207 31.9
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 6.0e-12 76.6 105 38.1
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 6.0e-12 76.6 148 31.8
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 1.0e-11 75.9 148 31.8
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 1.3e-11 75.5 117 37.6
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 1.7e-11 75.1 119 39.5
Sp1g19100 Schrenkiella parvula HOM05D012602 ORTHO05D003486 1.7e-11 75.1 170 32.9
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 1.7e-11 75.1 148 31.8
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 2.3e-11 74.7 98 40.8
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 3.0e-11 74.3 213 28.6
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 3.0e-11 74.3 206 31.6
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 3.0e-11 74.3 104 37.5
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 3.0e-11 74.3 115 36.5
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 3.9e-11 73.9 136 31.6
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 3.9e-11 73.9 131 35.9
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 3.9e-11 73.9 107 38.3
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 6.6e-11 73.2 137 32.8
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 8.6e-11 72.8 122 40.2
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 8.6e-11 72.8 119 39.5
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 8.6e-11 72.8 119 37.0
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 8.6e-11 72.8 134 33.6
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 1.1e-10 72.4 119 37.8
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.1e-10 72.4 108 39.8
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.9e-10 71.6 98 39.8
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 1.9e-10 71.6 100 38.0
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 1.9e-10 71.6 100 38.0
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 2.5e-10 71.2 252 26.2
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 4.3e-10 70.5 102 39.2
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 7.3e-10 69.7 108 37.0
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 9.5e-10 69.3 114 37.7
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 1.2e-09 68.9 222 30.6
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.6e-09 68.6 158 32.3
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.6e-09 68.6 121 33.1
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 1.6e-09 68.6 215 28.8
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 2.1e-09 68.2 98 37.8
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 3.6e-09 67.4 227 27.8
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 3.6e-09 67.4 171 30.4
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 3.6e-09 67.4 124 40.3
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 3.6e-09 67.4 118 36.4
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 8.1e-09 66.2 99 38.4
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 8.1e-09 66.2 161 32.9
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 1.4e-08 65.5 120 35.8
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 1.4e-08 65.5 204 28.9
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.8e-08 65.1 103 38.8
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 2.3e-08 64.7 144 36.8
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 2.3e-08 64.7 147 34.7
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 2.3e-08 64.7 116 37.1
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 5.2e-08 63.5 132 36.4
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 5.2e-08 63.5 137 30.7
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 6.8e-08 63.2 170 34.1
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 8.9e-08 62.8 260 29.2
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 1.2e-07 62.4 125 37.6
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 1.2e-07 62.4 222 26.6
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 1.2e-07 62.4 114 36.0
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.2e-07 62.4 112 32.1
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 1.2e-07 62.4 116 33.6
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 1.2e-07 62.4 100 36.0
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.5e-07 62.0 118 37.3
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 1.5e-07 62.0 172 34.3
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 1.5e-07 62.0 140 33.6
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 1.5e-07 62.0 96 35.4
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.0e-07 61.6 94 36.2
PSO528G0175 Papaver somniferum HOM05D020877 ORTHO05D003486 2.0e-07 61.6 107 35.5
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 2.6e-07 61.2 112 36.6
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 2.6e-07 61.2 129 32.6
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 2.6e-07 61.2 129 32.6
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 3.4e-07 60.8 118 35.6
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 3.4e-07 60.8 118 35.6
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 3.4e-07 60.8 192 30.2
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 4.4e-07 60.5 124 32.3
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 5.8e-07 60.1 120 35.8
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 5.8e-07 60.1 124 30.6
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 5.8e-07 60.1 204 28.4
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 7.5e-07 59.7 110 38.2
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 7.5e-07 59.7 108 38.9
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 9.8e-07 59.3 144 35.4
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 9.8e-07 59.3 107 40.2
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 9.8e-07 59.3 94 34.0
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 9.8e-07 59.3 103 34.0
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 1.3e-06 58.9 111 33.3
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 1.7e-06 58.5 127 35.4
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 2.2e-06 58.2 131 31.3
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 2.2e-06 58.2 101 31.7
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 2.9e-06 57.8 131 31.3
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 2.9e-06 57.8 142 28.9
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 3.7e-06 57.4 151 31.8
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 3.7e-06 57.4 123 34.1
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.4e-06 56.6 197 27.4
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 8.3e-06 56.2 204 28.4


User provided reference genes

Program Settings