Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 5.7e-167 590.9 306 100.0
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 2.9e-163 578.6 306 97.4
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 9.7e-159 563.5 298 97.3
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 5.9e-156 554.3 306 93.5
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 1.7e-155 552.7 306 93.1
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 3.8e-155 551.6 306 93.8
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 6.5e-155 550.8 306 93.5
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 1.1e-154 550.1 306 92.2
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 3.2e-154 548.5 298 94.0
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 2.3e-152 542.3 306 90.5
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 6.7e-152 540.8 306 90.8
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 4.4e-151 538.1 306 90.8
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 1.7e-150 536.2 311 90.4
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 2.5e-146 522.3 286 94.1
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 1.2e-145 520.0 307 87.6
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 4.1e-133 478.4 306 79.4
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 4.1e-125 451.8 308 74.4
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 1.2e-124 450.3 306 73.5
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 2.0e-124 449.5 306 73.2
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 3.5e-124 448.7 309 73.1
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.1e-122 443.7 306 72.9
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.1e-122 443.7 309 72.5
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 5.6e-122 441.4 306 72.5
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 9.5e-122 440.7 306 72.2
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 9.5e-122 440.7 306 72.2
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 4.7e-121 438.3 306 72.2
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 8.0e-121 437.6 308 72.1
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.8e-120 436.4 309 72.8
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 2.3e-120 436.0 298 73.8
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 4.0e-120 435.3 309 71.5
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 6.8e-120 434.5 304 72.0
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.2e-119 433.7 306 70.9
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 2.0e-119 433.0 308 71.4
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 9.8e-119 430.6 310 70.6
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.3e-118 430.3 309 69.9
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 2.2e-118 429.5 307 71.3
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 6.4e-118 427.9 303 69.6
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 8.3e-118 427.6 305 69.2
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.4e-117 426.8 309 68.9
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.9e-117 426.4 309 68.9
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 2.4e-117 426.0 309 69.6
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.2e-117 425.6 297 70.7
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 5.4e-117 424.9 309 68.9
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 7.0e-117 424.5 309 69.3
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 7.0e-117 424.5 303 70.3
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 7.0e-117 424.5 300 70.7
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 9.2e-117 424.1 300 72.0
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 1.2e-116 423.7 312 68.9
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 1.2e-116 423.7 305 69.8
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.6e-116 423.3 300 70.3
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 3.5e-116 422.2 309 69.6
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 6.0e-116 421.4 309 68.9
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 6.0e-116 421.4 305 68.5
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 3.0e-115 419.1 298 73.5
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 3.0e-115 419.1 309 69.6
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 3.9e-115 418.7 387 58.1
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 3.9e-115 418.7 310 69.4
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 8.6e-115 417.5 309 70.9
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 8.6e-115 417.5 306 68.3
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 1.5e-114 416.8 305 68.9
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 5.6e-114 414.8 309 68.6
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 5.6e-114 414.8 309 68.9
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.6e-113 413.3 309 70.2
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 4.7e-113 411.8 309 66.7
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 4.7e-113 411.8 300 68.7
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 8.0e-113 411.0 309 66.7
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 1.4e-112 410.2 272 74.3
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 1.4e-112 410.2 300 66.3
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 3.1e-112 409.1 300 66.0
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 4.0e-112 408.7 305 68.2
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 8.9e-112 407.5 305 67.2
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 8.9e-112 407.5 300 66.0
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 1.5e-111 406.8 302 67.5
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 2.0e-111 406.4 306 69.3
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 2.6e-111 406.0 344 63.4
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 2.6e-111 406.0 305 65.2
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 3.4e-111 405.6 303 67.7
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 4.4e-111 405.2 297 67.7
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 1.3e-110 403.7 305 65.9
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 1.3e-110 403.7 347 60.8
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 1.7e-110 403.3 297 66.0
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 3.7e-110 402.1 346 61.6
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 2.4e-109 399.4 309 66.3
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 3.2e-109 399.1 309 65.4
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 4.1e-109 398.7 307 66.8
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 5.4e-109 398.3 309 67.0
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 9.2e-109 397.5 296 67.6
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.2e-108 397.1 275 71.3
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 1.6e-108 396.7 298 67.8
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 2.1e-108 396.4 291 67.7
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.7e-108 396.0 305 65.9
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 3.5e-108 395.6 305 66.6
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 3.5e-108 395.6 310 66.1
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 3.5e-108 395.6 301 65.8
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 3.5e-108 395.6 296 67.2
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 6.0e-108 394.8 305 64.9
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 7.8e-108 394.4 340 63.5
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 1.3e-107 393.7 301 66.4
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 1.3e-107 393.7 349 59.0
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.3e-107 393.7 307 67.1
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 2.3e-107 392.9 306 67.3
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 5.1e-107 391.7 305 66.2
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 6.6e-107 391.3 306 66.7
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.1e-106 390.6 277 67.9
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 1.9e-106 389.8 277 67.9
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.2e-105 387.1 301 64.1
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.6e-105 386.7 298 64.4
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 5.2e-104 381.7 313 64.2
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 6.8e-104 381.3 275 67.6
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 7.5e-103 377.9 259 73.0
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 7.5e-103 377.9 307 62.9
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 7.5e-103 377.9 289 67.5
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.4e-101 372.9 280 66.1
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 7.1e-101 371.3 257 71.2
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 2.7e-100 369.4 266 66.9
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 2.7e-100 369.4 302 63.6
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.7e-99 366.7 293 62.8
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.5e-98 363.6 265 69.4
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 7.3e-98 361.3 302 62.3
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 4.0e-96 355.5 308 59.7
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.5e-95 353.6 299 60.2
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 2.0e-95 353.2 304 60.2
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 3.4e-95 352.4 306 62.1
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 5.8e-95 351.7 305 59.3
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 1.9e-93 346.7 302 57.9
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 4.6e-92 342.0 300 58.3
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.5e-90 336.3 287 58.9
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 9.0e-88 327.8 229 70.3
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 7.1e-85 318.2 265 60.0
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.8e-80 303.5 230 69.1
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 6.9e-80 301.6 288 53.1
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 6.4e-78 295.0 271 56.8
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 5.4e-77 292.0 283 54.8
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 4.6e-76 288.9 295 49.2
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.3e-75 287.3 310 49.7
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 2.3e-75 286.6 303 50.2
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 1.4e-72 277.3 278 51.4
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 2.2e-70 270.0 302 51.3
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 6.4e-70 268.5 294 48.6
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 2.1e-68 263.5 248 57.3
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 1.8e-67 260.4 274 49.6
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 3.0e-67 259.6 277 48.0
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 3.9e-67 259.2 277 48.0
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 2.5e-66 256.5 203 65.5
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 6.1e-60 235.3 195 64.1
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.3e-59 233.4 233 52.4
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.9e-58 230.3 187 63.1
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 2.2e-57 226.9 200 59.5
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 1.6e-52 210.7 221 51.6
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.3e-51 206.8 324 43.2
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 6.7e-51 205.3 148 67.6
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 1.1e-50 204.5 210 50.5
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 2.2e-49 200.3 149 66.4
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 1.4e-48 197.6 183 56.3
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 4.1e-48 196.1 285 40.0
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 2.4e-40 170.2 150 57.3
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 4.4e-34 149.4 273 34.8
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 5.5e-29 132.5 313 30.7
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 4.4e-26 122.9 104 63.5
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 1.8e-24 117.5 210 34.3
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 1.6e-20 104.4 114 49.1
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 8.0e-20 102.1 76 68.4
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 1.4e-19 101.3 126 50.8
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 2.6e-18 97.1 302 25.5
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 1.4e-16 91.3 264 28.8
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 3.7e-09 66.6 56 55.4
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 7.8e-07 58.9 184 32.6


User provided reference genes

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